> top > docs > PMC:7253482 > spans > 181-624 > annotations

PMC:7253482 / 181-624 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 327-332 Gene denotes spike Gene:43740568
26 7-11 Species denotes CoVs Tax:11118
27 210-221 Species denotes Coronavirus Tax:11118
33 186-191 Gene denotes spike Gene:43740568
34 374-380 Chemical denotes glycan MESH:D011134
41 17-25 Disease denotes zoonotic MESH:D015047
42 392-396 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 196-208 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T2 224-232 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 105-112 http://purl.obolibrary.org/obo/CLO_0009985 denotes focuses
T2 350-351 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 196-208 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T2 224-232 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T1 26-35 http://purl.obolibrary.org/obo/IDO_0000528 denotes pathogens
T2 157-180 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 165-180 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 308-313 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T25 6-7 -LRB- denotes (
T26 7-11 NNS denotes CoVs
T27 11-12 -RRB- denotes )
T28 13-16 VBP denotes are
T29 17-25 JJ denotes zoonotic
T30 26-35 NNS denotes pathogens
T31 36-40 IN denotes with
T32 41-45 JJ denotes high
T33 46-54 NN denotes fatality
T34 55-60 NNS denotes rates
T35 61-64 CC denotes and
T36 65-73 JJ denotes pandemic
T37 74-83 NN denotes potential
T38 85-92 NN denotes Vaccine
T39 93-104 NN denotes development
T40 105-112 VBZ denotes focuses
T41 113-115 IN denotes on
T42 116-119 DT denotes the
T43 120-129 JJ denotes principal
T44 130-136 NN denotes target
T45 137-139 IN denotes of
T46 140-143 DT denotes the
T47 144-156 VBG denotes neutralizing
T48 157-164 JJ denotes humoral
T49 165-171 JJ denotes immune
T50 172-180 NN denotes response
T51 180-181 -COMMA- denotes ,
T52 182-185 DT denotes the
T53 186-191 NN denotes spike
T54 192-193 -LRB- denotes (
T55 193-194 NN denotes S
T56 194-195 -RRB- denotes )
T57 196-208 NN denotes glycoprotein
T58 210-221 NN denotes Coronavirus
T59 222-223 NN denotes S
T60 224-232 NNS denotes proteins
T61 233-236 VBP denotes are
T62 237-248 RB denotes extensively
T63 249-261 VBN denotes glycosylated
T64 261-262 -COMMA- denotes ,
T65 263-271 VBG denotes encoding
T66 272-278 IN denotes around
T67 279-284 CD denotes 66–87
T68 285-293 JJ denotes N-linked
T69 294-307 NN denotes glycosylation
T70 308-313 NNS denotes sites
T71 314-317 IN denotes per
T72 318-326 JJ denotes trimeric
T73 327-332 NN denotes spike
T74 334-338 RB denotes Here
T75 338-339 -COMMA- denotes ,
T76 340-342 PRP denotes we
T77 343-349 VBP denotes reveal
T78 350-351 DT denotes a
T79 352-360 JJ denotes specific
T80 361-365 NN denotes area
T81 366-368 IN denotes of
T82 369-373 JJ denotes high
T83 374-380 NN denotes glycan
T84 381-388 NN denotes density
T85 389-391 IN denotes on
T86 392-396 NNP denotes MERS
T87 397-398 NNP denotes S
T88 399-403 WDT denotes that
T89 404-411 VBZ denotes results
T90 412-414 IN denotes in
T91 415-418 DT denotes the
T92 419-428 NN denotes formation
T93 429-431 IN denotes of
R23 T26 T25 arg2Of CoVs,(
R24 T27 T25 arg3Of ),(
R26 T30 T28 arg2Of pathogens,are
R27 T30 T29 arg1Of pathogens,zoonotic
R28 T30 T31 arg1Of pathogens,with
R29 T35 T31 arg2Of and,with
R30 T34 T32 arg1Of rates,high
R31 T34 T33 arg1Of rates,fatality
R32 T34 T35 arg1Of rates,and
R33 T37 T35 arg2Of potential,and
R34 T37 T36 arg1Of potential,pandemic
R35 T39 T38 arg1Of development,Vaccine
R36 T39 T40 arg1Of development,focuses
R37 T40 T41 arg1Of focuses,on
R38 T44 T41 arg2Of target,on
R39 T44 T42 arg1Of target,the
R40 T44 T43 arg1Of target,principal
R41 T44 T45 arg1Of target,of
R42 T50 T45 arg2Of response,of
R43 T50 T46 arg1Of response,the
R44 T50 T47 arg1Of response,neutralizing
R45 T50 T48 arg1Of response,humoral
R46 T50 T49 arg1Of response,immune
R47 T50 T51 arg1Of response,","
R48 T57 T51 arg2Of glycoprotein,","
R49 T57 T52 arg1Of glycoprotein,the
R50 T57 T53 arg1Of glycoprotein,spike
R51 T53 T54 arg1Of spike,(
R52 T55 T54 arg2Of S,(
R53 T56 T54 arg3Of ),(
R54 T60 T58 arg1Of proteins,Coronavirus
R55 T60 T59 arg1Of proteins,S
R56 T60 T61 arg1Of proteins,are
R57 T63 T61 arg2Of glycosylated,are
R58 T63 T62 arg1Of glycosylated,extensively
R59 T60 T63 arg2Of proteins,glycosylated
R60 T63 T64 arg1Of glycosylated,","
R61 T60 T65 arg1Of proteins,encoding
R62 T70 T65 arg2Of sites,encoding
R63 T63 T65 modOf glycosylated,encoding
R64 T70 T66 arg1Of sites,around
R65 T70 T67 arg1Of sites,66–87
R66 T70 T68 arg1Of sites,N-linked
R67 T70 T69 arg1Of sites,glycosylation
R68 T70 T71 arg1Of sites,per
R69 T73 T71 arg2Of spike,per
R70 T73 T72 arg1Of spike,trimeric
R71 T77 T74 arg1Of reveal,Here
R72 T77 T75 arg1Of reveal,","
R73 T76 T77 arg1Of we,reveal
R74 T80 T77 arg2Of area,reveal
R75 T80 T78 arg1Of area,a
R76 T80 T79 arg1Of area,specific
R77 T80 T81 arg1Of area,of
R78 T84 T81 arg2Of density,of
R79 T84 T82 arg1Of density,high
R80 T84 T83 arg1Of density,glycan
R81 T80 T85 arg1Of area,on
R82 T87 T85 arg2Of S,on
R83 T87 T86 arg1Of S,MERS
R84 T80 T88 arg1Of area,that
R85 T80 T89 arg1Of area,results
R86 T89 T90 arg1Of results,in
R87 T92 T90 arg2Of formation,in
R88 T92 T91 arg1Of formation,the
R89 T92 T93 arg1Of formation,of

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T1 196-208 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T2 224-232 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 196-208 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T2 224-232 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T4 392-396 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T4 85-209 Sentence denotes Vaccine development focuses on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein.
T5 210-333 Sentence denotes Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
69 7-11 Species denotes CoVs Tax:11118
26 7-11 Species denotes CoVs Tax:11118
41 17-25 Disease denotes zoonotic MESH:D015047
33 186-191 Gene denotes spike Gene:43740568
27 210-221 Species denotes Coronavirus Tax:11118
24 327-332 Gene denotes spike Gene:43740568
34 374-380 Chemical denotes glycan MESH:D011134
42 392-396 Disease denotes MERS MESH:D018352

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1 192-208 Protein denotes (S) glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94|https://www.uniprot.org/uniprot/Q4ZJS1
T100 222-232 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T2 157-180 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 165-180 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 294-307 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 419-428 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T2 157-180 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 165-180 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 294-307 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 419-428 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 157-180 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 165-180 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 285-307 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T5 294-307 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T6 419-428 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 85-209 Sentence denotes Vaccine development focuses on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein.
T5 210-333 Sentence denotes Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike.