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PMC:7253482 / 164-607 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 344-349 Gene denotes spike Gene:43740568
26 24-28 Species denotes CoVs Tax:11118
27 227-238 Species denotes Coronavirus Tax:11118
33 203-208 Gene denotes spike Gene:43740568
34 391-397 Chemical denotes glycan MESH:D011134
41 34-42 Disease denotes zoonotic MESH:D015047
42 409-413 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 213-225 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T2 241-249 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 122-129 http://purl.obolibrary.org/obo/CLO_0009985 denotes focuses
T2 367-368 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 213-225 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T2 241-249 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T1 43-52 http://purl.obolibrary.org/obo/IDO_0000528 denotes pathogens
T2 174-197 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 182-197 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 325-330 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T21 2-3 -LRB- denotes (
T22 3-7 NNS denotes MERS
T23 7-8 -RRB- denotes )
T24 9-22 NNS denotes coronaviruses
T25 23-24 -LRB- denotes (
T26 24-28 NNS denotes CoVs
T27 28-29 -RRB- denotes )
T28 30-33 VBP denotes are
T29 34-42 JJ denotes zoonotic
T30 43-52 NNS denotes pathogens
T31 53-57 IN denotes with
T32 58-62 JJ denotes high
T33 63-71 NN denotes fatality
T34 72-77 NNS denotes rates
T35 78-81 CC denotes and
T36 82-90 JJ denotes pandemic
T37 91-100 NN denotes potential
T38 102-109 NN denotes Vaccine
T39 110-121 NN denotes development
T40 122-129 VBZ denotes focuses
T41 130-132 IN denotes on
T42 133-136 DT denotes the
T43 137-146 JJ denotes principal
T44 147-153 NN denotes target
T45 154-156 IN denotes of
T46 157-160 DT denotes the
T47 161-173 VBG denotes neutralizing
T48 174-181 JJ denotes humoral
T49 182-188 JJ denotes immune
T50 189-197 NN denotes response
T51 197-198 -COMMA- denotes ,
T52 199-202 DT denotes the
T53 203-208 NN denotes spike
T54 209-210 -LRB- denotes (
T55 210-211 NN denotes S
T56 211-212 -RRB- denotes )
T57 213-225 NN denotes glycoprotein
T58 227-238 NN denotes Coronavirus
T59 239-240 NN denotes S
T60 241-249 NNS denotes proteins
T61 250-253 VBP denotes are
T62 254-265 RB denotes extensively
T63 266-278 VBN denotes glycosylated
T64 278-279 -COMMA- denotes ,
T65 280-288 VBG denotes encoding
T66 289-295 IN denotes around
T67 296-301 CD denotes 66–87
T68 302-310 JJ denotes N-linked
T69 311-324 NN denotes glycosylation
T70 325-330 NNS denotes sites
T71 331-334 IN denotes per
T72 335-343 JJ denotes trimeric
T73 344-349 NN denotes spike
T74 351-355 RB denotes Here
T75 355-356 -COMMA- denotes ,
T76 357-359 PRP denotes we
T77 360-366 VBP denotes reveal
T78 367-368 DT denotes a
T79 369-377 JJ denotes specific
T80 378-382 NN denotes area
T81 383-385 IN denotes of
T82 386-390 JJ denotes high
T83 391-397 NN denotes glycan
T84 398-405 NN denotes density
T85 406-408 IN denotes on
T86 409-413 NNP denotes MERS
T87 414-415 NNP denotes S
T88 416-420 WDT denotes that
T89 421-428 VBZ denotes results
T90 429-431 IN denotes in
T91 432-435 DT denotes the
R19 T22 T21 arg2Of MERS,(
R20 T23 T21 arg3Of ),(
R21 T28 T24 arg1Of are,coronaviruses
R22 T24 T25 arg1Of coronaviruses,(
R23 T26 T25 arg2Of CoVs,(
R24 T27 T25 arg3Of ),(
R26 T30 T28 arg2Of pathogens,are
R27 T30 T29 arg1Of pathogens,zoonotic
R28 T30 T31 arg1Of pathogens,with
R29 T35 T31 arg2Of and,with
R30 T34 T32 arg1Of rates,high
R31 T34 T33 arg1Of rates,fatality
R32 T34 T35 arg1Of rates,and
R33 T37 T35 arg2Of potential,and
R34 T37 T36 arg1Of potential,pandemic
R35 T39 T38 arg1Of development,Vaccine
R36 T39 T40 arg1Of development,focuses
R37 T40 T41 arg1Of focuses,on
R38 T44 T41 arg2Of target,on
R39 T44 T42 arg1Of target,the
R40 T44 T43 arg1Of target,principal
R41 T44 T45 arg1Of target,of
R42 T50 T45 arg2Of response,of
R43 T50 T46 arg1Of response,the
R44 T50 T47 arg1Of response,neutralizing
R45 T50 T48 arg1Of response,humoral
R46 T50 T49 arg1Of response,immune
R47 T50 T51 arg1Of response,","
R48 T57 T51 arg2Of glycoprotein,","
R49 T57 T52 arg1Of glycoprotein,the
R50 T57 T53 arg1Of glycoprotein,spike
R51 T53 T54 arg1Of spike,(
R52 T55 T54 arg2Of S,(
R53 T56 T54 arg3Of ),(
R54 T60 T58 arg1Of proteins,Coronavirus
R55 T60 T59 arg1Of proteins,S
R56 T60 T61 arg1Of proteins,are
R57 T63 T61 arg2Of glycosylated,are
R58 T63 T62 arg1Of glycosylated,extensively
R59 T60 T63 arg2Of proteins,glycosylated
R60 T63 T64 arg1Of glycosylated,","
R61 T60 T65 arg1Of proteins,encoding
R62 T70 T65 arg2Of sites,encoding
R63 T63 T65 modOf glycosylated,encoding
R64 T70 T66 arg1Of sites,around
R65 T70 T67 arg1Of sites,66–87
R66 T70 T68 arg1Of sites,N-linked
R67 T70 T69 arg1Of sites,glycosylation
R68 T70 T71 arg1Of sites,per
R69 T73 T71 arg2Of spike,per
R70 T73 T72 arg1Of spike,trimeric
R71 T77 T74 arg1Of reveal,Here
R72 T77 T75 arg1Of reveal,","
R73 T76 T77 arg1Of we,reveal
R74 T80 T77 arg2Of area,reveal
R75 T80 T78 arg1Of area,a
R76 T80 T79 arg1Of area,specific
R77 T80 T81 arg1Of area,of
R78 T84 T81 arg2Of density,of
R79 T84 T82 arg1Of density,high
R80 T84 T83 arg1Of density,glycan
R81 T80 T85 arg1Of area,on
R82 T87 T85 arg2Of S,on
R83 T87 T86 arg1Of S,MERS
R84 T80 T88 arg1Of area,that
R85 T80 T89 arg1Of area,results
R86 T89 T90 arg1Of results,in

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T1 213-225 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T2 241-249 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 213-225 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T2 241-249 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T3 3-7 Species denotes MERS NCBItxid:1335626
T4 409-413 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T4 102-226 Sentence denotes Vaccine development focuses on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein.
T5 227-350 Sentence denotes Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
68 9-22 Species denotes coronaviruses Tax:11118
69 24-28 Species denotes CoVs Tax:11118
26 24-28 Species denotes CoVs Tax:11118
41 34-42 Disease denotes zoonotic MESH:D015047
33 203-208 Gene denotes spike Gene:43740568
27 227-238 Species denotes Coronavirus Tax:11118
24 344-349 Gene denotes spike Gene:43740568
34 391-397 Chemical denotes glycan MESH:D011134
42 409-413 Disease denotes MERS MESH:D018352

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1 209-225 Protein denotes (S) glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94|https://www.uniprot.org/uniprot/Q4ZJS1
T100 239-249 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T2 174-197 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 182-197 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 311-324 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T2 174-197 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 182-197 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 311-324 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 174-197 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 182-197 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 302-324 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T5 311-324 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 102-226 Sentence denotes Vaccine development focuses on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein.
T5 227-350 Sentence denotes Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike.