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PMC:7253482 / 13799-14138 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
522 302-305 Gene denotes Env Gene:64006
523 296-301 Species denotes HIV-1 Tax:11676
524 324-333 Species denotes influenza Tax:11320
525 314-317 Gene denotes GPC Gene:2995
526 113-117 Gene denotes DPP4 Gene:1803
527 170-177 Chemical denotes glycans MESH:D011134
529 143-147 Disease denotes MERS MESH:D018352
530 278-282 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T85 258-266 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T86 296-299 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T52 278-282 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T53 324-333 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T161 170-177 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T162 258-266 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T34 135-139 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T35 228-233 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T46731 0-5 VBN denotes Given
T24648 6-10 IN denotes that
T45765 11-14 DT denotes the
T56881 15-31 JJ denotes receptor-binding
T98112 32-38 NN denotes domain
T74716 39-41 VBZ denotes is
T2696 158-166 VBN denotes occluded
T85598 42-45 DT denotes the
T16051 46-50 JJ denotes main
T58379 51-57 NN denotes target
T53325 58-60 IN denotes of
T7859 61-73 VBG denotes neutralising
T26958 74-85 NN denotes antibodies8
T7334 85-86 -COMMA- denotes ,
T85070 87-89 PRP denotes it
T1822 90-92 VBZ denotes is
T40337 93-103 JJ denotes surprising
T90378 104-108 IN denotes that
T34257 109-112 DT denotes the
T66548 113-117 NN denotes DPP4
T75367 118-134 JJ denotes receptor-binding
T76130 135-139 NN denotes site
T72556 140-142 IN denotes of
T49036 143-147 NNS denotes MERS
T45911 148-149 NN denotes S
T21250 150-153 VBD denotes was
T8376 154-157 RB denotes not
T90865 167-169 IN denotes by
T29223 170-177 NNS denotes glycans
T85418 178-179 -LRB- denotes (
T83410 179-186 NN denotes Fig. 3a
T92859 186-187 -RRB- denotes )
T98108 187-188 -COMMA- denotes ,
T94718 189-191 IN denotes as
T75995 192-200 VBN denotes observed
T33346 201-204 IN denotes for
T37727 205-210 JJ denotes other
T65600 211-227 JJ denotes receptor-binding
T6494 228-233 NNS denotes sites
T57622 234-236 IN denotes of
T15659 237-242 NN denotes class
T77211 243-244 CD denotes I
T77114 245-250 JJ denotes viral
T21676 251-257 NN denotes fusion
T55295 258-266 NNS denotes proteins
T74940 266-267 -COMMA- denotes ,
T82828 268-277 VBG denotes including
T94991 278-282 NNP denotes SARS
T30576 283-284 NNP denotes S
T72214 285-286 -LRB- denotes (
T78031 286-293 NN denotes Fig. 3b
T67457 293-294 -RRB- denotes )
T6464 294-295 -COMMA- denotes ,
T4572 296-301 NN denotes HIV-1
T27072 302-307 NN denotes Env49
T51710 307-308 -COMMA- denotes ,
T37781 309-313 NN denotes LASV
T43889 314-319 NN denotes GPC24
T95596 320-323 CC denotes and
T81584 324-333 NN denotes influenza
T23338 334-338 NN denotes HA50
R19912 T74716 T46731 arg2Of is,Given
R72618 T1822 T46731 modOf is,Given
R28846 T74716 T24648 arg1Of is,that
R73554 T98112 T45765 arg1Of domain,the
R85720 T98112 T56881 arg1Of domain,receptor-binding
R85326 T98112 T74716 arg1Of domain,is
R10483 T58379 T74716 arg2Of target,is
R59202 T58379 T85598 arg1Of target,the
R8717 T58379 T16051 arg1Of target,main
R31607 T58379 T53325 arg1Of target,of
R13280 T7859 T53325 arg2Of neutralising,of
R63181 T26958 T7859 arg2Of antibodies8,neutralising
R31883 T58379 T7334 arg1Of target,","
R51342 T85070 T7334 arg2Of it,","
R30657 T74716 T1822 arg1Of is,is
R57469 T40337 T1822 arg2Of surprising,is
R79271 T74716 T40337 arg1Of is,surprising
R43979 T2696 T40337 arg2Of occluded,surprising
R57152 T2696 T90378 arg1Of occluded,that
R10287 T76130 T34257 arg1Of site,the
R91721 T76130 T66548 arg1Of site,DPP4
R46219 T76130 T75367 arg1Of site,receptor-binding
R87289 T76130 T72556 arg1Of site,of
R72909 T45911 T72556 arg2Of S,of
R53198 T45911 T49036 arg1Of S,MERS
R53259 T76130 T21250 arg1Of site,was
R67385 T2696 T21250 arg2Of occluded,was
R98007 T2696 T8376 arg1Of occluded,not
R19300 T29223 T2696 arg1Of glycans,occluded
R78857 T76130 T2696 arg2Of site,occluded
R95353 T29223 T90865 arg2Of glycans,by
R40287 T29223 T85418 arg1Of glycans,(
R76705 T83410 T85418 arg2Of Fig. 3a,(
R94953 T92859 T85418 arg3Of ),(
R96046 T1822 T98108 arg1Of is,","
R61866 T1822 T94718 arg1Of is,as
R35368 T75995 T94718 arg2Of observed,as
R73049 T75995 T33346 arg1Of observed,for
R14458 T6494 T33346 arg2Of sites,for
R78626 T6494 T37727 arg1Of sites,other
R30385 T6494 T65600 arg1Of sites,receptor-binding
R23066 T6494 T57622 arg1Of sites,of
R45373 T55295 T57622 arg2Of proteins,of
R94067 T55295 T15659 arg1Of proteins,class
R60328 T55295 T77211 arg1Of proteins,I
R46477 T55295 T77114 arg1Of proteins,viral
R67171 T55295 T21676 arg1Of proteins,fusion
R78404 T55295 T74940 arg1Of proteins,","
R41447 T55295 T82828 arg1Of proteins,including
R26419 T95596 T82828 arg2Of and,including
R76563 T30576 T94991 arg1Of S,SARS
R58777 T30576 T72214 arg1Of S,(
R98030 T78031 T72214 arg2Of Fig. 3b,(
R76229 T67457 T72214 arg3Of ),(
R54934 T30576 T6464 arg1Of S,","
R31581 T27072 T6464 arg2Of Env49,","
R73775 T27072 T4572 arg1Of Env49,HIV-1
R75492 T6464 T51710 arg1Of ",",","
R20433 T43889 T51710 arg2Of GPC24,","
R18870 T43889 T37781 arg1Of GPC24,LASV
R34352 T51710 T95596 arg1Of ",",and
R34285 T23338 T95596 arg2Of HA50,and
R44564 T23338 T81584 arg1Of HA50,influenza

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T84 258-266 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T85 296-299 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T119 170-177 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T120 258-266 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T96 143-147 Species denotes MERS NCBItxid:1335626
T97 278-282 Species denotes SARS NCBItxid:694009
T98 296-301 Species denotes HIV-1 NCBItxid:11676
T99 309-313 Species denotes LASV NCBItxid:11620

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T84 0-339 Sentence denotes Given that the receptor-binding domain is the main target of neutralising antibodies8, it is surprising that the DPP4 receptor-binding site of MERS S was not occluded by glycans (Fig. 3a), as observed for other receptor-binding sites of class I viral fusion proteins, including SARS S (Fig. 3b), HIV-1 Env49, LASV GPC24 and influenza HA50.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T47 278-282 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 324-333 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
526 113-117 Gene denotes DPP4 Gene:1803
529 143-147 Disease denotes MERS MESH:D018352
527 170-177 Chemical denotes glycans MESH:D011134
530 278-282 Disease denotes SARS MESH:D045169
523 296-301 Species denotes HIV-1 Tax:11676
522 302-305 Gene denotes Env Gene:64006
525 314-317 Gene denotes GPC Gene:2995
524 324-333 Species denotes influenza Tax:11320

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T3669 113-117 Protein denotes DPP4 https://www.uniprot.org/uniprot/Q9N2I7

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T84 0-339 Sentence denotes Given that the receptor-binding domain is the main target of neutralising antibodies8, it is surprising that the DPP4 receptor-binding site of MERS S was not occluded by glycans (Fig. 3a), as observed for other receptor-binding sites of class I viral fusion proteins, including SARS S (Fig. 3b), HIV-1 Env49, LASV GPC24 and influenza HA50.