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PMC:7253482 / 10289-10619 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
324 300-316 Species denotes MERS coronavirus Tax:1335626
325 317-322 Gene denotes spike Gene:43740568
326 263-278 Chemical denotes N-linked glycan
327 291-295 Disease denotes SARS MESH:D045169
452 194-197 Gene denotes Env Gene:64006
454 188-193 Species denotes HIV-1 Tax:11676
456 207-210 Gene denotes GPC Gene:2995
476 24-30 Chemical denotes glycan MESH:D011134
477 93-105 Chemical denotes oligomannose
478 111-118 Chemical denotes glycans MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T63 163-176 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T64 188-191 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T36 291-295 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T106 55-57 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T107 111-118 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T108 163-176 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T29 249-253 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T14034 7-17 NN denotes processing
T78905 17-18 -COMMA- denotes ,
T88293 19-23 WRB denotes when
T83202 24-30 NN denotes glycan
T70460 31-41 NN denotes clustering
T30751 42-45 VBD denotes was
T12473 46-53 VBN denotes reduced
T49752 54-55 -LRB- denotes (
T67538 55-57 NN denotes SI
T99013 58-64 NN denotes Fig. 4
T79420 64-65 -RRB- denotes )
T67059 67-70 DT denotes The
T14141 71-79 NN denotes presence
T95025 80-82 IN denotes of
T69698 83-92 VBN denotes clustered
T70586 93-110 JJ denotes oligomannose-type
T74519 111-118 NNS denotes glycans
T38719 119-121 VBZ denotes is
T19161 122-133 JJ denotes reminiscent
T96776 134-136 IN denotes of
T24985 137-141 DT denotes that
T40354 142-147 VBN denotes found
T8442 148-150 IN denotes on
T27531 151-156 JJ denotes other
T77670 157-162 JJ denotes viral
T91715 163-176 NNS denotes glycoproteins
T67031 176-177 -COMMA- denotes ,
T58888 178-187 VBG denotes including
T43383 188-193 NN denotes HIV-1
T2450 194-197 NN denotes Env
T74217 198-201 CC denotes and
T84923 202-206 NN denotes LASV
T96185 207-227 NN denotes GPC24,31,34,36,45,46
T18456 229-233 NN denotes Fig.
T38026 234-235 CD denotes 2
T11696 236-248 JJ denotes Quantitative
T81709 249-262 JJ denotes site-specific
T93400 263-271 JJ denotes N-linked
T30000 272-278 NN denotes glycan
T11057 279-287 NN denotes analysis
T72208 288-290 IN denotes of
T91997 291-295 NNS denotes SARS
T44946 296-299 CC denotes and
T46103 300-304 NN denotes MERS
T75132 305-316 NN denotes coronavirus
T95276 317-322 NN denotes spike
R61542 T12473 T88293 arg2Of reduced,when
R58609 T70460 T83202 arg1Of clustering,glycan
R98202 T70460 T30751 arg1Of clustering,was
R5844 T12473 T30751 arg2Of reduced,was
R36627 T70460 T12473 arg2Of clustering,reduced
R82759 T12473 T49752 arg1Of reduced,(
R21035 T99013 T49752 arg2Of Fig. 4,(
R71588 T79420 T49752 arg3Of ),(
R64275 T99013 T67538 arg1Of Fig. 4,SI
R7304 T14141 T67059 arg1Of presence,The
R33015 T14141 T95025 arg1Of presence,of
R27005 T74519 T95025 arg2Of glycans,of
R50925 T74519 T69698 arg2Of glycans,clustered
R34998 T74519 T70586 arg1Of glycans,oligomannose-type
R20006 T14141 T38719 arg1Of presence,is
R49206 T19161 T38719 arg2Of reminiscent,is
R13200 T14141 T19161 arg1Of presence,reminiscent
R43217 T19161 T96776 arg1Of reminiscent,of
R88638 T24985 T96776 arg2Of that,of
R27660 T24985 T40354 arg2Of that,found
R10787 T40354 T8442 arg1Of found,on
R84986 T91715 T8442 arg2Of glycoproteins,on
R89913 T91715 T27531 arg1Of glycoproteins,other
R55385 T91715 T77670 arg1Of glycoproteins,viral
R48247 T91715 T67031 arg1Of glycoproteins,","
R70125 T91715 T58888 arg1Of glycoproteins,including
R39879 T74217 T58888 arg2Of and,including
R6800 T2450 T43383 arg1Of Env,HIV-1
R7241 T2450 T74217 arg1Of Env,and
R7569 T96185 T74217 arg2Of "GPC24,31,34,36,45,46",and
R9909 T96185 T84923 arg1Of "GPC24,31,34,36,45,46",LASV
R91856 T93400 T18456 arg1Of N-linked,Fig.
R27276 T93400 T38026 arg1Of N-linked,2
R69083 T93400 T11696 arg1Of N-linked,Quantitative
R93804 T93400 T81709 arg1Of N-linked,site-specific
R42900 T11057 T72208 arg1Of analysis,of
R64184 T91997 T72208 arg2Of SARS,of
R28302 T11057 T44946 arg1Of analysis,and
R79050 T46103 T44946 arg2Of MERS,and

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T63 163-176 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T64 188-191 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T85 111-118 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T86 163-176 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T66 188-193 Species denotes HIV-1 NCBItxid:11676
T67 202-206 Species denotes LASV NCBItxid:11620
T68 291-295 Species denotes SARS NCBItxid:694009
T69 300-316 Species denotes MERS coronavirus NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T60 67-228 Sentence denotes The presence of clustered oligomannose-type glycans is reminiscent of that found on other viral glycoproteins, including HIV-1 Env and LASV GPC24,31,34,36,45,46.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T33 291-295 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
476 24-30 Chemical denotes glycan MESH:D011134
477 93-105 Chemical denotes oligomannose
478 111-118 Chemical denotes glycans MESH:D011134
454 188-193 Species denotes HIV-1 Tax:11676
452 194-197 Gene denotes Env Gene:64006
456 207-210 Gene denotes GPC Gene:2995
326 263-278 Chemical denotes N-linked glycan
327 291-295 Disease denotes SARS MESH:D045169
324 300-316 Species denotes MERS coronavirus Tax:1335626
325 317-322 Gene denotes spike Gene:43740568

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2719 163-176 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T2804 194-197 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T60 67-228 Sentence denotes The presence of clustered oligomannose-type glycans is reminiscent of that found on other viral glycoproteins, including HIV-1 Env and LASV GPC24,31,34,36,45,46.