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PMC:7253482 / 10232-10491 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
452 251-254 Gene denotes Env Gene:64006
454 245-250 Species denotes HIV-1 Tax:11676
475 31-38 Chemical denotes mannose MESH:D008358
476 81-87 Chemical denotes glycan MESH:D011134
477 150-162 Chemical denotes oligomannose
478 168-175 Chemical denotes glycans MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T62 31-38 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T63 220-233 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T64 245-248 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T105 31-38 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T106 112-114 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T107 168-175 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T108 220-233 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T25939 1-9 VBD denotes revealed
T13557 10-18 VBN denotes enhanced
T1670 19-27 NN denotes trimming
T57479 28-30 IN denotes of
T68502 31-38 NN denotes mannose
T91138 39-47 NNS denotes residues
T34347 47-48 -COMMA- denotes ,
T48546 49-53 FW denotes i.e.
T76136 54-63 VBN denotes increased
T14034 64-74 NN denotes processing
T78905 74-75 -COMMA- denotes ,
T88293 76-80 WRB denotes when
T83202 81-87 NN denotes glycan
T70460 88-98 NN denotes clustering
T30751 99-102 VBD denotes was
T12473 103-110 VBN denotes reduced
T49752 111-112 -LRB- denotes (
T67538 112-114 NN denotes SI
T99013 115-121 NN denotes Fig. 4
T79420 121-122 -RRB- denotes )
T67059 124-127 DT denotes The
T14141 128-136 NN denotes presence
T95025 137-139 IN denotes of
T69698 140-149 VBN denotes clustered
T70586 150-167 JJ denotes oligomannose-type
T74519 168-175 NNS denotes glycans
T38719 176-178 VBZ denotes is
T19161 179-190 JJ denotes reminiscent
T96776 191-193 IN denotes of
T24985 194-198 DT denotes that
T40354 199-204 VBN denotes found
T8442 205-207 IN denotes on
T27531 208-213 JJ denotes other
T77670 214-219 JJ denotes viral
T91715 220-233 NNS denotes glycoproteins
T67031 233-234 -COMMA- denotes ,
T58888 235-244 VBG denotes including
T43383 245-250 NN denotes HIV-1
T2450 251-254 NN denotes Env
T74217 255-258 CC denotes and
R45273 T1670 T25939 arg2Of trimming,revealed
R19683 T1670 T13557 arg2Of trimming,enhanced
R71348 T1670 T57479 arg1Of trimming,of
R27562 T91138 T57479 arg2Of residues,of
R8034 T91138 T68502 arg1Of residues,mannose
R88839 T1670 T34347 arg1Of trimming,","
R94234 T14034 T34347 arg2Of processing,","
R80093 T14034 T48546 arg1Of processing,i.e.
R18003 T14034 T76136 arg2Of processing,increased
R52621 T25939 T78905 arg1Of revealed,","
R12104 T25939 T88293 arg1Of revealed,when
R61542 T12473 T88293 arg2Of reduced,when
R58609 T70460 T83202 arg1Of clustering,glycan
R98202 T70460 T30751 arg1Of clustering,was
R5844 T12473 T30751 arg2Of reduced,was
R36627 T70460 T12473 arg2Of clustering,reduced
R82759 T12473 T49752 arg1Of reduced,(
R21035 T99013 T49752 arg2Of Fig. 4,(
R71588 T79420 T49752 arg3Of ),(
R64275 T99013 T67538 arg1Of Fig. 4,SI
R7304 T14141 T67059 arg1Of presence,The
R33015 T14141 T95025 arg1Of presence,of
R27005 T74519 T95025 arg2Of glycans,of
R50925 T74519 T69698 arg2Of glycans,clustered
R34998 T74519 T70586 arg1Of glycans,oligomannose-type
R20006 T14141 T38719 arg1Of presence,is
R49206 T19161 T38719 arg2Of reminiscent,is
R13200 T14141 T19161 arg1Of presence,reminiscent
R43217 T19161 T96776 arg1Of reminiscent,of
R88638 T24985 T96776 arg2Of that,of
R27660 T24985 T40354 arg2Of that,found
R10787 T40354 T8442 arg1Of found,on
R84986 T91715 T8442 arg2Of glycoproteins,on
R89913 T91715 T27531 arg1Of glycoproteins,other
R55385 T91715 T77670 arg1Of glycoproteins,viral
R48247 T91715 T67031 arg1Of glycoproteins,","
R70125 T91715 T58888 arg1Of glycoproteins,including
R39879 T74217 T58888 arg2Of and,including
R6800 T2450 T43383 arg1Of Env,HIV-1
R7241 T2450 T74217 arg1Of Env,and

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T62 31-38 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T63 220-233 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T64 245-248 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T84 31-38 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T85 168-175 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T86 220-233 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T66 245-250 Species denotes HIV-1 NCBItxid:11676

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
475 31-38 Chemical denotes mannose MESH:D008358
476 81-87 Chemical denotes glycan MESH:D011134
477 150-162 Chemical denotes oligomannose
478 168-175 Chemical denotes glycans MESH:D011134
454 245-250 Species denotes HIV-1 Tax:11676
452 251-254 Gene denotes Env Gene:64006

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2719 220-233 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T2804 251-254 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T46 31-38 http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname denotes mannose