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PMC:7253235 / 2262-4681 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
97 27-44 Species denotes novel Coronavirus Tax:2697049
98 46-55 Species denotes 2019-nCoV Tax:2697049
99 213-219 Species denotes people Tax:9606
100 668-673 Species denotes human Tax:9606
101 677-682 Species denotes human Tax:9606
102 914-929 Species denotes bat coronavirus Tax:1508220
103 961-974 Species denotes coronaviruses Tax:11118
104 989-1007 Species denotes beta-coronaviruses Tax:694002
105 1009-1053 Species denotes severe acute respiratory syndrome (SARS-CoV) Tax:694009
106 1058-1113 Species denotes Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Tax:1335626
107 57-65 Disease denotes COVID-19 MESH:C000657245
108 158-184 Disease denotes acute respiratory syndrome MESH:D012120
109 236-244 Disease denotes infected MESH:D007239
110 310-316 Disease denotes deaths MESH:D003643
111 386-394 Disease denotes COVID-19 MESH:C000657245
112 802-811 Disease denotes pneumonia MESH:D011014
113 831-839 Disease denotes COVID-19 MESH:C000657245
128 1790-1798 Species denotes patients Tax:9606
129 1899-1907 Species denotes patients Tax:9606
130 2163-2171 Species denotes Patients Tax:9606
131 1606-1611 Disease denotes fever MESH:D005334
132 1613-1618 Disease denotes cough MESH:D003371
133 1620-1627 Disease denotes myalgia MESH:D063806
134 1633-1640 Disease denotes fatigue MESH:D005221
135 1685-1693 Disease denotes headache MESH:D006261
136 1695-1705 Disease denotes hemoptysis MESH:D006469
137 1739-1747 Disease denotes diarrhea MESH:D003967
138 1943-1950 Disease denotes dyspnea MESH:D004417
139 2083-2118 Disease denotes acute respiratory distress syndrome MESH:D012128
140 2120-2124 Disease denotes ARDS MESH:D012128
141 2388-2392 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 1666-1672 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T3 1835-1840 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T4 1994-1999 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 593-598 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T2 1666-1672 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T3 1835-1840 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 1994-1999 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 2330-2335 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 57-65 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 151-184 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T37 386-394 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 526-536 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T39 614-618 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 802-811 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T41 831-839 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 1009-1042 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T43 1044-1052 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 1739-1747 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T45 2083-2118 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T46 2089-2118 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T47 2120-2124 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T5 149-150 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 404-407 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 552-553 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 668-673 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T9 677-682 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T10 702-708 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T11 868-872 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T12 914-917 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T13 1249-1254 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T14 1383-1384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1439-1444 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 1835-1840 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T17 1994-1999 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T18 2415-2417 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 989-993 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T2 2218-2224 Chemical denotes Cohort http://purl.obolibrary.org/obo/CHEBI_34935

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1715-1720 http://purl.obolibrary.org/obo/GO_0050909 denotes taste

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T24 802-811 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T25 1606-1611 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T26 1613-1618 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T27 1620-1627 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T28 1633-1640 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T29 1685-1693 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T30 1695-1705 Phenotype denotes hemoptysis http://purl.obolibrary.org/obo/HP_0002105
T31 1707-1720 Phenotype denotes loss of taste http://purl.obolibrary.org/obo/HP_0000223
T32 1739-1747 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T33 1943-1950 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T34 2089-2109 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-12 Sentence denotes Introduction
T20 13-359 Sentence denotes The spread of novel Coronavirus (2019-nCoV, COVID-19) shook the world with its highly virulent transmissibility, manifesting largely as a severe acute respiratory syndrome, with more than 4.3 million people confirmed to be infected—with approximately 1.3 million cases in the USA—and over 294,000 deaths worldwide at the time of this writing [1].
T21 360-603 Sentence denotes Originating in China, the COVID-19 epidemic has surpassed its predecessors in the number of hospitalizations and intensive care unit admissions required to handle an infectious process within a short period of time and of such grand scale [2].
T22 604-778 Sentence denotes The early SARS epidemic that emerged in 2002 similarly involved human-to-human transmission, with animal vectors linked to outbreaks and confirmed in laboratory isolates [3].
T23 779-948 Sentence denotes Initially described as pneumonia of unknown origin, COVID-19 is believed to be linked to bats based on its genomic similarity to known bat coronavirus BatCoV RaTG13 [4].
T24 949-1163 Sentence denotes Though most coronaviruses are mild, two beta-coronaviruses, severe acute respiratory syndrome (SARS-CoV) and Middle East Respiratory Syndrome Coronavirus (MERS-CoV), also took place within the last two decades [5].
T25 1164-1244 Sentence denotes These two unique predecessors preceded the pandemic that began in China in 2019.
T26 1245-1408 Sentence denotes The virus, originating in Wuhan, Hubei province, China, in late December, resulted in nearly 96,000 cases initially and is now considered a worldwide pandemic [6].
T27 1409-1552 Sentence denotes Routes of transmission of the virus have been documented to include respiratory droplets, contact, fomites, and fecal-oral transmission [7, 8].
T28 1553-1748 Sentence denotes The most common symptoms at onset of illness include fever, cough, myalgia, and fatigue, with rare complaints of sputum production, headache, hemoptysis, loss of taste and/or smell, and diarrhea.
T29 1749-1867 Sentence denotes In addition to clinical characteristics, patients showcased ground-glass opacities on chest computed tomography scans.
T30 1868-2012 Sentence denotes However, more than half of the patients in early studies notably developed dyspnea that correlated with patchy infiltrates on chest radiographs.
T31 2013-2162 Sentence denotes The mean duration of symptoms was roughly 8 days, with progression to acute respiratory distress syndrome (ARDS) occurring between days 8 and 14 [9].
T32 2163-2419 Sentence denotes Patients receiving mechanical ventilation in the Wuhan Cohort typically required ICU admission of up to 1–2 weeks following symptom development which foreshadowed the scale of the pandemic and mirrored data obtained from the MERS epidemic in 2015 [10, 11].

2_test

Id Subject Object Predicate Lexical cue
32462289-15200815-24380928 775-776 15200815 denotes 3
32462289-32015507-24380929 945-946 32015507 denotes 4
32462289-23678167-24380930 1160-1161 23678167 denotes 5
32462289-31986257-24380931 1405-1406 31986257 denotes 6
32462289-32087098-24380932 1546-1547 32087098 denotes 7
32462289-31994742-24380933 2159-2160 31994742 denotes 9
32462289-31986264-24380934 2411-2413 31986264 denotes 10