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PMC:7253235 / 16771-20701 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
593 2081-2089 Species denotes patients Tax:9606
594 2191-2199 Species denotes patients Tax:9606
595 2265-2278 Species denotes Not specified Tax:32644
596 2370-2383 Species denotes Not specified Tax:32644
597 2476-2489 Species denotes Not specified Tax:32644
598 2570-2583 Species denotes Not specified Tax:32644
599 2763-2776 Species denotes Not specified Tax:32644
600 2777-2790 Species denotes Not specified Tax:32644
601 2820-2833 Species denotes Not specified Tax:32644
602 2834-2847 Species denotes Not specified Tax:32644
603 2975-2988 Species denotes Not specified Tax:32644
604 3095-3108 Species denotes Not specified Tax:32644
605 3204-3217 Species denotes Not specified Tax:32644
606 3316-3329 Species denotes Not specified Tax:32644
607 2104-2112 Disease denotes COVID-19 MESH:C000657245
608 2138-2144 Disease denotes cancer MESH:D009369
609 2171-2180 Disease denotes Mortality MESH:D003643
610 2184-2190 Disease denotes cancer MESH:D009369
611 2893-2897 Disease denotes died MESH:D003643
615 1902-1910 Disease denotes COVID-19 MESH:C000657245
616 1924-1930 Disease denotes cancer MESH:D009369
617 1935-1957 Disease denotes cardiovascular disease MESH:D002318
623 3407-3413 Disease denotes cancer MESH:D009369
624 3415-3420 Disease denotes tumor MESH:D009369
625 3422-3440 Disease denotes malignant neoplasm MESH:D009369
626 3445-3454 Disease denotes carcinoma MESH:D009369
627 3489-3495 Disease denotes cancer MESH:D009369
632 3568-3590 Disease denotes cardiovascular disease MESH:D002318
633 3625-3639 Disease denotes cardiomyopathy MESH:D009202
634 3641-3664 Disease denotes coronary artery disease MESH:D003324
635 3670-3692 Disease denotes ischemic heart disease MESH:D003324
638 3770-3778 Species denotes patients Tax:9606
639 3864-3872 Species denotes patients Tax:9606
642 3890-3902 Disease denotes hypertension MESH:D006973
643 3904-3930 Disease denotes CVD cardiovascular disease MESH:D002318
688 47-55 Species denotes patients Tax:9606
689 129-137 Species denotes patients Tax:9606
690 234-242 Species denotes patients Tax:9606
691 457-465 Species denotes patients Tax:9606
692 553-561 Species denotes patients Tax:9606
693 659-667 Species denotes patients Tax:9606
694 758-766 Species denotes patients Tax:9606
695 975-983 Species denotes patients Tax:9606
696 1120-1128 Species denotes patients Tax:9606
697 1358-1366 Species denotes patients Tax:9606
698 1884-1892 Species denotes patients Tax:9606
699 40-46 Disease denotes cancer MESH:D009369
700 122-128 Disease denotes cancer MESH:D009369
701 150-159 Disease denotes infection MESH:D007239
702 204-213 Disease denotes infection MESH:D007239
703 272-297 Disease denotes small cell lung carcinoma MESH:D055752
704 299-304 Disease denotes NSCLC MESH:D002289
705 389-398 Disease denotes mortality MESH:D003643
706 451-456 Disease denotes NSCLC MESH:D002289
707 522-530 Disease denotes COVID-19 MESH:C000657245
708 567-572 Disease denotes NSCLC MESH:D002289
709 652-658 Disease denotes cancer MESH:D009369
710 702-713 Disease denotes Lung cancer MESH:D008175
711 734-740 Disease denotes cancer MESH:D009369
712 774-782 Disease denotes Diabetes MESH:D003920
713 803-845 Disease denotes cardiovascular and cerebrovascular disease MESH:D002318
714 1051-1056 Disease denotes tumor MESH:D009369
715 1134-1140 Disease denotes cancer MESH:D009369
716 1164-1172 Disease denotes COVID-19 MESH:C000657245
717 1203-1209 Disease denotes cancer MESH:D009369
718 1256-1267 Disease denotes Lung cancer MESH:D008175
719 1351-1357 Disease denotes cancer MESH:D009369
720 1427-1437 Disease denotes malignancy MESH:D009369
721 1478-1486 Disease denotes COVID-19 MESH:C000657245
722 1487-1497 Disease denotes infections MESH:D007239
723 1535-1541 Disease denotes cancer MESH:D009369
724 1617-1623 Disease denotes cancer MESH:D009369
725 1677-1685 Disease denotes COVID-19 MESH:C000657245
726 1686-1695 Disease denotes infection MESH:D007239
727 1709-1718 Disease denotes infection MESH:D007239
728 1727-1736 Disease denotes mortality MESH:D003643
729 1853-1859 Disease denotes cancer MESH:D009369
730 1866-1874 Disease denotes COVID-19 MESH:C000657245
731 1875-1883 Disease denotes infected MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T29 278-282 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T30 283-287 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T31 702-706 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T32 1256-1260 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T33 2688-2692 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T34 3641-3656 Body_part denotes coronary artery http://purl.org/sig/ont/fma/fma49893
T35 3679-3684 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T21 283-287 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T22 702-706 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T23 1256-1260 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T24 2688-2692 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 3641-3656 Body_part denotes coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T26 3650-3656 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T27 3679-3684 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T173 40-46 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T174 122-128 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T175 150-159 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T176 204-213 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T177 268-297 Disease denotes non-small cell lung carcinoma http://purl.obolibrary.org/obo/MONDO_0005233
T178 272-297 Disease denotes small cell lung carcinoma http://purl.obolibrary.org/obo/MONDO_0008433
T179 283-297 Disease denotes lung carcinoma http://purl.obolibrary.org/obo/MONDO_0005138
T180 288-297 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T181 299-304 Disease denotes NSCLC http://purl.obolibrary.org/obo/MONDO_0005233
T182 451-456 Disease denotes NSCLC http://purl.obolibrary.org/obo/MONDO_0005233
T183 522-530 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T184 567-572 Disease denotes NSCLC http://purl.obolibrary.org/obo/MONDO_0005233
T185 652-658 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T186 702-713 Disease denotes Lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T187 707-713 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T188 734-740 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T189 774-782 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T190 822-845 Disease denotes cerebrovascular disease http://purl.obolibrary.org/obo/MONDO_0011057
T191 1051-1056 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T192 1134-1140 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T193 1164-1172 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T194 1203-1209 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T195 1256-1267 Disease denotes Lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T196 1261-1267 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T197 1351-1357 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T198 1478-1486 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T199 1487-1497 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T200 1535-1541 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T201 1617-1623 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T202 1677-1685 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T203 1686-1695 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T204 1709-1718 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T205 1853-1859 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T206 1866-1874 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T207 1902-1910 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T208 1924-1930 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T209 1935-1957 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T210 2104-2112 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T211 2138-2144 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T212 2151-2154 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T213 2184-2190 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T214 3407-3413 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T215 3415-3420 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T216 3422-3440 Disease denotes malignant neoplasm http://purl.obolibrary.org/obo/MONDO_0004992|http://purl.obolibrary.org/obo/MONDO_0006517
T218 3432-3440 Disease denotes neoplasm http://purl.obolibrary.org/obo/MONDO_0005070|http://purl.obolibrary.org/obo/MONDO_0021079
T220 3445-3454 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T221 3489-3495 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T222 3568-3590 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T223 3625-3639 Disease denotes cardiomyopathy http://purl.obolibrary.org/obo/MONDO_0004994
T224 3641-3664 Disease denotes coronary artery disease http://purl.obolibrary.org/obo/MONDO_0005010
T225 3650-3664 Disease denotes artery disease http://purl.obolibrary.org/obo/MONDO_0000473
T226 3670-3692 Disease denotes ischemic heart disease http://purl.obolibrary.org/obo/MONDO_0024644
T227 3679-3692 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T228 3886-3889 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T229 3890-3902 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T230 3908-3930 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T112 142-143 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 220-221 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T114 278-282 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T115 283-287 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T116 283-287 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T117 500-501 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 623-624 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 702-706 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T120 702-706 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T121 1256-1260 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T122 1256-1260 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T123 1268-1271 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T124 1759-1760 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 1986-1988 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T126 2351-2353 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T127 2675-2679 http://purl.obolibrary.org/obo/CLO_0053133 denotes 1590
T128 2680-2682 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T129 2688-2692 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T130 2688-2692 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T131 2695-2701 http://purl.obolibrary.org/obo/CLO_0001409 denotes 5 (28)
T132 3076-3078 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T133 3295-3297 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T134 3348-3350 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T135 3500-3506 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T136 3650-3656 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T137 3650-3656 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T138 3679-3684 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T139 3679-3684 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T140 3679-3684 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T141 3679-3684 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T26 966-971 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T27 2310-2313 Chemical denotes Guo http://purl.obolibrary.org/obo/CHEBI_16750

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T106 40-46 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T107 122-128 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T108 268-297 Phenotype denotes non-small cell lung carcinoma http://purl.obolibrary.org/obo/HP_0030358
T109 299-304 Phenotype denotes NSCLC http://purl.obolibrary.org/obo/HP_0030358
T110 451-456 Phenotype denotes NSCLC http://purl.obolibrary.org/obo/HP_0030358
T111 567-572 Phenotype denotes NSCLC http://purl.obolibrary.org/obo/HP_0030358
T112 652-658 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T113 702-713 Phenotype denotes Lung cancer http://purl.obolibrary.org/obo/HP_0100526
T114 734-740 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T115 1051-1056 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664
T116 1134-1140 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T117 1203-1209 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T118 1256-1267 Phenotype denotes Lung cancer http://purl.obolibrary.org/obo/HP_0100526
T119 1351-1357 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T120 1535-1541 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T121 1617-1623 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T122 1853-1859 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T123 1924-1930 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T124 1935-1957 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T125 2138-2144 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T126 2184-2190 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T127 3407-3413 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T128 3415-3420 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664
T129 3432-3440 Phenotype denotes neoplasm http://purl.obolibrary.org/obo/HP_0002664
T130 3445-3454 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T131 3489-3495 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T132 3568-3590 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T133 3625-3639 Phenotype denotes cardiomyopathy http://purl.obolibrary.org/obo/HP_0001638
T134 3890-3902 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T135 3908-3930 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T103 0-219 Sentence denotes Another study from China evaluating all cancer patients admitted to Zhongnan Hospital of Wuhan University determined that cancer patients had a 0.79% infection rate compared with the overall city’s 0.37% infection rate.
T104 220-436 Sentence denotes A total of 12 patients were affected, 58.3% had non-small cell lung carcinoma (NSCLC) with approximately 41.7% were undergoing treatment with chemotherapy and resulting mortality rate as of March 10, 2020, being 25%.
T105 437-579 Sentence denotes Additionally, NSCLC patients that were greater than age 60 had a higher incidence of COVID-19 compared with younger patients with NSCLC [43•].
T106 580-701 Sentence denotes These findings are further corroborated by a study that examined all 28 cancer patients admitted to 3 hospitals in China.
T107 702-773 Sentence denotes Lung cancer was the most common cancer type among these patients (25%).
T108 774-896 Sentence denotes Diabetes (14.3%) and chronic cardiovascular and cerebrovascular disease (14.3%) were the most common comorbidities listed.
T109 897-1092 Sentence denotes Clinical factors that significantly predicted worse outcomes in this group of patients included age, patchy consolidation on imaging, and receipt of anti-tumor treatment in the last 14 days [44].
T110 1093-1255 Sentence denotes These studies suggest that patients with cancer are at higher risk for COVID-19, and those with older age and cancer are at an even higher risk for poor outcomes.
T111 1256-1498 Sentence denotes Lung cancer has been reported to be more common in these studies, but the total sample size of cancer patients remains too low to draw any meaningful conclusions on which malignancy may be most associated with severity of COVID-19 infections.
T112 1499-1737 Sentence denotes Lastly, although having recent anti-cancer treatment increases the risk for severe outcomes, it is unclear which anti-cancer agents are associated with higher risk for acquiring COVID-19 infection, severity of infection, and/or mortality.
T113 1738-1893 Sentence denotes Table 1 demonstrates a literature review of studies published until April 26, 2020 that identify the prevalence of cancer among COVID-19 infected patients.
T114 1894-1995 Sentence denotes Table 1 COVID-19 Studies with cancer and cardiovascular disease epidemiology (through April 22, 2020)
T115 1996-2205 Sentence denotes Author Country Clinical setting Number of institutions Date of publication Number of patients in study with COVID-19 Canceran (%) Predominant cancer n (%) HTN n (%) CVDbn (%) Mortality in cancer patients n (%)
T116 2206-2218 Sentence denotes Wu C, et al.
T117 2219-2309 Sentence denotes China Hospitalized 1 March 13,2020 201 1(0.5) Not specified 39 (19.4) 8 (4.0) Not reported
T118 2310-2323 Sentence denotes Guo T, et al.
T119 2324-2416 Sentence denotes China Hospitalized 1 March 27, 2020 187 13(7) Not specified 61 (32.6) 29 (15.5) Not reported
T120 2417-2431 Sentence denotes Zhou F, et al.
T121 2432-2508 Sentence denotes China Hospitalized 2 March 9, 2020 191 2(1) Not specified 58 (30.4) 15 (8) 0
T122 2509-2522 Sentence denotes Shi S, et al.
T123 2523-2617 Sentence denotes China Hospitalized 1 March 25, 2020 416 9(2.2) Not specified 127 (30.5) 61 (14.7) Not reported
T124 2618-2633 Sentence denotes Liang W, et al.
T125 2634-2740 Sentence denotes China Hospitalized 575 February 14, 2020 1590 18(1.1) Lung - 5 (28) Not reported Not reported Not reported
T126 2741-2756 Sentence denotes Onder G, et al.
T127 2757-2898 Sentence denotes Italy Not specified Not specified March 23, 2020 355 72 (20.3) Not specified Not specified 117 (33) 100 (Study only reviewed cases that died)
T128 2899-3019 Sentence denotes Grasselli G, et al.c Italy Intensive care units 72 April 6, 2020 1043 81(8) Not specified 509 (49) 223 (21) Not reported
T129 3020-3039 Sentence denotes McMichael T, et al.
T130 3040-3141 Sentence denotes USA Long-term care facility 1 March 27, 2020 167 15(9) Not specified 74 (44.3) 68 (40.7) Not reported
T131 3142-3157 Sentence denotes Goyal P, et al.
T132 3158-3249 Sentence denotes USA Hospitalized 2 April 17, 2020 393 23(5.9) Not specified 197 (50.1) 82 (21) Not reported
T133 3250-3268 Sentence denotes Richardson, et al.
T134 3269-3365 Sentence denotes USA Hospitalized 17 April 22, 2020 5700 320(6) Not specified 3026 (56.6)c 966 (18)d Not reported
T135 3366-3455 Sentence denotes aCancer was defined in studies as either cancer, tumor, malignant neoplasm, or carcinoma.
T136 3456-3522 Sentence denotes There was variability in whether cancer was active or in remission
T137 3523-3692 Sentence denotes bThere were various definitions utilized for cardiovascular disease across all studies not limited to cardiomyopathy, coronary artery disease, and ischemic heart disease
T138 3693-3885 Sentence denotes c,dHistory regarding these comorbidities may not have been available for all patients enrolled in the study; hence, percentage does not correlate the with total number of patients in the study
T139 3886-3930 Sentence denotes HTN hypertension, CVD cardiovascular disease