PMC:7253235 / 14968-16770
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 542 | 7-15 | Species | denotes | patients | Tax:9606 |
| 543 | 285-293 | Species | denotes | patients | Tax:9606 |
| 544 | 353-361 | Species | denotes | patients | Tax:9606 |
| 545 | 437-445 | Species | denotes | patients | Tax:9606 |
| 546 | 631-639 | Species | denotes | patients | Tax:9606 |
| 547 | 698-706 | Species | denotes | patients | Tax:9606 |
| 548 | 759-767 | Species | denotes | patients | Tax:9606 |
| 549 | 796-804 | Species | denotes | patients | Tax:9606 |
| 550 | 907-915 | Species | denotes | patients | Tax:9606 |
| 551 | 953-961 | Species | denotes | patients | Tax:9606 |
| 552 | 1238-1246 | Species | denotes | patients | Tax:9606 |
| 553 | 1282-1290 | Species | denotes | patients | Tax:9606 |
| 554 | 1689-1697 | Species | denotes | patients | Tax:9606 |
| 555 | 0-6 | Disease | denotes | Cancer | MESH:D009369 |
| 556 | 133-143 | Disease | denotes | malignancy | MESH:D009369 |
| 557 | 278-284 | Disease | denotes | cancer | MESH:D009369 |
| 558 | 344-352 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 559 | 430-436 | Disease | denotes | cancer | MESH:D009369 |
| 560 | 511-517 | Disease | denotes | cancer | MESH:D009369 |
| 561 | 624-630 | Disease | denotes | cancer | MESH:D009369 |
| 562 | 772-778 | Disease | denotes | cancer | MESH:D009369 |
| 563 | 898-906 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 564 | 967-973 | Disease | denotes | cancer | MESH:D009369 |
| 565 | 975-986 | Disease | denotes | lung cancer | MESH:D008175 |
| 566 | 1020-1030 | Disease | denotes | malignancy | MESH:D009369 |
| 567 | 1069-1075 | Disease | denotes | cancer | MESH:D009369 |
| 568 | 1167-1172 | Disease | denotes | death | MESH:D003643 |
| 569 | 1231-1237 | Disease | denotes | cancer | MESH:D009369 |
| 570 | 1275-1281 | Disease | denotes | cancer | MESH:D009369 |
| 571 | 1673-1679 | Disease | denotes | cancer | MESH:D009369 |
| 572 | 1721-1732 | Disease | denotes | lung cancer | MESH:D008175 |
| 573 | 1746-1752 | Disease | denotes | cancer | MESH:D009369 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T26 | 244-249 | Body_part | denotes | Joint | http://purl.org/sig/ont/fma/fma7490 |
| T27 | 975-979 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T28 | 1721-1725 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T19 | 975-979 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T20 | 1721-1725 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T155 | 0-6 | Disease | denotes | Cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T156 | 278-284 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T157 | 344-352 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T158 | 430-436 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T159 | 511-517 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T160 | 624-630 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T161 | 772-778 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T162 | 898-906 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T163 | 967-973 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T164 | 975-986 | Disease | denotes | lung cancer | http://purl.obolibrary.org/obo/MONDO_0008903 |
| T165 | 980-986 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T166 | 1069-1075 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T167 | 1231-1237 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T168 | 1275-1281 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T169 | 1673-1679 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T170 | 1721-1732 | Disease | denotes | lung cancer | http://purl.obolibrary.org/obo/MONDO_0008903 |
| T171 | 1726-1732 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T172 | 1746-1752 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T94 | 68-73 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T95 | 232-235 | http://purl.obolibrary.org/obo/CLO_0008190 | denotes | Per |
| T96 | 244-249 | http://purl.obolibrary.org/obo/UBERON_0000982 | denotes | Joint |
| T97 | 244-249 | http://purl.obolibrary.org/obo/UBERON_0004905 | denotes | Joint |
| T98 | 472-474 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T99 | 681-682 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T100 | 853-854 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T101 | 893-897 | http://purl.obolibrary.org/obo/CLO_0053133 | denotes | 1590 |
| T102 | 950-952 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T103 | 975-979 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T104 | 975-979 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T105 | 1096-1097 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T106 | 1304-1305 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T107 | 1363-1364 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T108 | 1499-1501 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T109 | 1721-1725 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T110 | 1721-1725 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T111 | 1775-1776 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T24 | 1525-1530 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T25 | 1680-1685 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T91 | 0-6 | Phenotype | denotes | Cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T92 | 92-112 | Phenotype | denotes | immune dysregulation | http://purl.obolibrary.org/obo/HP_0002958 |
| T93 | 278-284 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T94 | 430-436 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T95 | 511-517 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T96 | 624-630 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T97 | 772-778 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T98 | 967-973 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T99 | 975-986 | Phenotype | denotes | lung cancer | http://purl.obolibrary.org/obo/HP_0100526 |
| T100 | 1069-1075 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T101 | 1231-1237 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T102 | 1275-1281 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T103 | 1673-1679 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T104 | 1721-1732 | Phenotype | denotes | lung cancer | http://purl.obolibrary.org/obo/HP_0100526 |
| T105 | 1746-1752 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T91 | 0-231 | Sentence | denotes | Cancer patients have shown to be at higher risk for contracting the virus likely from their immune dysregulation in setting of their malignancy and various treatments and remain at high risk for sustaining severe outcomes [19, 42]. |
| T92 | 232-377 | Sentence | denotes | Per the WHO Joint Mission Report, the CFR for cancer patients (7.6%) was higher than the overall CFR for 55,924 COVID-19 patients in China [19•]. |
| T93 | 378-480 | Sentence | denotes | Reports from Italy and Washington also support that cancer patients had similar findings [14, 22, 23]. |
| T94 | 481-587 | Sentence | denotes | However, the specific type of cancer was neither reported in these studies nor linked to specific outcome. |
| T95 | 588-680 | Sentence | denotes | Several studies have indicated that cancer patients trend toward having more severe disease. |
| T96 | 681-852 | Sentence | denotes | A case series of patients admitted to New York hospitals identified that 5.9% patients had cancer and 43% of these patients required invasive ventilation for support [24]. |
| T97 | 853-1031 | Sentence | denotes | A prospective cohort study of following 1590 COVID-19 patients in China demonstrated that of the 18 patients with cancer, lung cancer was the most frequently incurred malignancy. |
| T98 | 1032-1292 | Sentence | denotes | Moreover, in this cohort, history of cancer was associated with a higher risk of severe events (ICU admission requiring ventilation or death) and faster progression to severe events (median time for cancer patients 13 days vs. 43 days for non-cancer patients). |
| T99 | 1293-1491 | Sentence | denotes | Those with a history of chemotherapy or surgery in the past month had a higher risk for severe events even when adjusted for other risk factors including age (OR 5.34, 95% CI 1.80–16.18; p < 0.005). |
| T100 | 1492-1592 | Sentence | denotes | Of the 18 described in the Wuhan group, roughly 10% received chemotherapy and 7.1% targeted therapy. |
| T101 | 1593-1698 | Sentence | denotes | However, age alone was also an independent risk factor for severe events in the cancer group of patients. |
| T102 | 1699-1802 | Sentence | denotes | Those with history of lung cancer versus other cancer types did not predict a more severe outcome [42]. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32462289-32066541-24380944 | 227-229 | 32066541 | denotes | 42 |
| 32462289-32220208-24380945 | 476-478 | 32220208 | denotes | 23 |
| 32462289-32066541-24380946 | 1798-1800 | 32066541 | denotes | 42 |