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PMC:7253233 / 8351-10596 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
293 834-852 Gene denotes C-reactive protein Gene:1401
294 20-27 Species denotes patient Tax:9606
295 473-480 Species denotes patient Tax:9606
296 1792-1800 Species denotes patients Tax:9606
297 1929-1936 Species denotes Patient Tax:9606
298 767-771 Chemical denotes urea MESH:D014508
299 772-780 Chemical denotes nitrogen MESH:D009584
300 797-807 Chemical denotes creatinine MESH:D003404
301 1460-1473 Chemical denotes levetiracetam MESH:D000077287
302 33-70 Disease denotes chronic obstructive pulmonary disease MESH:D029424
303 72-101 Disease denotes venous thromboembolic disease MESH:D054556
304 112-123 Disease denotes heart block MESH:D006327
305 129-151 Disease denotes chronic kidney disease MESH:D051436
306 227-234 Disease denotes dyspnea MESH:D004417
307 304-311 Disease denotes hypoxic MESH:D000860
308 376-395 Disease denotes respiratory failure MESH:D012131
309 456-467 Disease denotes pneumonitis MESH:D011014
310 523-534 Disease denotes lymphopenia MESH:D008231
311 584-596 Disease denotes coagulopathy MESH:D001778
312 711-727 Disease denotes thrombocytopenia MESH:D013921
313 740-759 Disease denotes acute kidney injury MESH:D058186
314 964-972 Disease denotes COVID-19 MESH:C000657245
315 1208-1216 Disease denotes seizures MESH:D012640
316 1346-1364 Disease denotes status epilepticus MESH:D013226
317 1382-1390 Disease denotes seizures MESH:D012640
318 1400-1410 Disease denotes convulsive MESH:D012640
319 1412-1419 Disease denotes Seizure MESH:D012640
320 1818-1831 Disease denotes kidney injury MESH:D058186
321 1895-1907 Disease denotes coagulopathy MESH:D001778

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42 112-117 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T43 137-143 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T44 244-250 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T45 403-408 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T46 423-427 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T47 560-570 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T48 746-752 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T49 761-766 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T50 845-852 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T51 1135-1141 Body_part denotes eyelid http://purl.org/sig/ont/fma/fma54437
T52 1493-1498 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T53 1552-1564 Body_part denotes white matter http://purl.org/sig/ont/fma/fma83929
T54 1677-1682 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T55 1716-1733 Body_part denotes cardiac pacemaker http://purl.org/sig/ont/fma/fma9477
T56 1818-1824 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T32 112-117 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T33 137-143 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T34 403-408 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T35 423-427 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T36 746-752 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T37 761-766 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T38 1135-1141 Body_part denotes eyelid http://purl.obolibrary.org/obo/UBERON_0001711
T39 1493-1498 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T40 1552-1564 Body_part denotes white matter http://purl.obolibrary.org/obo/UBERON_0002316
T41 1677-1682 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T42 1743-1749 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T43 1818-1824 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T69 33-70 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T70 53-70 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T71 72-93 Disease denotes venous thromboembolic http://purl.obolibrary.org/obo/MONDO_0005399
T72 103-123 Disease denotes complete heart block http://purl.obolibrary.org/obo/MONDO_0000468
T73 129-151 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T74 137-151 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T76 376-395 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T77 456-467 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T78 523-534 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T79 584-596 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531
T80 711-727 Disease denotes thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0002049
T81 740-759 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T82 753-759 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T83 964-972 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T84 1346-1364 Disease denotes status epilepticus http://purl.obolibrary.org/obo/MONDO_0002125
T85 1825-1831 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T86 1895-1907 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T89 15-19 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T90 15-19 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T91 112-117 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T92 112-117 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T93 112-117 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T94 112-117 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T95 137-143 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T96 137-143 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T97 137-143 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T98 195-199 http://purl.obolibrary.org/obo/CLO_0001550 denotes a 10
T99 401-402 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 403-408 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T101 423-427 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T102 423-427 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T103 729-732 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T104 746-752 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T105 746-752 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T106 746-752 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T107 761-766 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T108 761-766 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T109 901-902 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T110 955-959 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T111 1475-1476 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T112 1493-1498 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T113 1493-1498 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T114 1677-1682 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T115 1677-1682 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T116 1743-1749 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T117 1818-1824 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T118 1818-1824 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T119 1818-1824 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T120 1833-1834 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T121 2144-2145 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 2183-2194 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posteriorly
T123 2196-2197 http://purl.obolibrary.org/obo/CLO_0001021 denotes b

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T17 15-19 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T18 669-672 Chemical denotes PTT http://purl.obolibrary.org/obo/CHEBI_3088
T19 767-771 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T20 772-780 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T21 797-807 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T22 845-852 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23 1063-1066 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T24 1204-1207 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T25 1460-1473 Chemical denotes levetiracetam http://purl.obolibrary.org/obo/CHEBI_6437
T26 1918-1921 Chemical denotes PTT http://purl.obolibrary.org/obo/CHEBI_3088

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T49 33-70 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T50 79-101 Phenotype denotes thromboembolic disease http://purl.obolibrary.org/obo/HP_0001907
T51 103-123 Phenotype denotes complete heart block http://purl.obolibrary.org/obo/HP_0001709
T52 129-151 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T53 227-234 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T54 263-283 Phenotype denotes generalized weakness http://purl.obolibrary.org/obo/HP_0003324
T55 376-395 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T56 423-439 Phenotype denotes lung infiltrates http://purl.obolibrary.org/obo/HP_0002113
T57 523-534 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T58 584-596 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256
T59 681-697 Phenotype denotes elevated D-dimer http://purl.obolibrary.org/obo/HP_0033106
T60 711-727 Phenotype denotes thrombocytopenia http://purl.obolibrary.org/obo/HP_0001873
T61 740-759 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T62 1153-1162 Phenotype denotes twitching http://purl.obolibrary.org/obo/HP_0010546
T63 1208-1216 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250
T64 1346-1364 Phenotype denotes status epilepticus http://purl.obolibrary.org/obo/HP_0002133
T65 1382-1390 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250
T66 1412-1419 Phenotype denotes Seizure http://purl.obolibrary.org/obo/HP_0001250
T67 1895-1907 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T66 0-284 Sentence denotes An 82-year-old male patient with chronic obstructive pulmonary disease, venous thromboembolic disease, complete heart block, and chronic kidney disease presented to the emergency department with a 10-day history of progressive dyspnea, altered mental status, and generalized weakness.
T67 285-338 Sentence denotes He was found to be hypoxic, febrile, and tachycardic.
T68 339-468 Sentence denotes He was intubated for acute hypoxemic respiratory failure with a chest X-ray showing lung infiltrates consistent with pneumonitis.
T69 469-900 Sentence denotes The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L.
T70 901-1023 Sentence denotes A nasopharyngeal swab polymerase chain reaction (PCR) test for COVID-19 was sent on admission and was positive 24 h later.
T71 1024-1194 Sentence denotes Continuous video electroencephalogram (EEG) monitoring was ordered on day 5 of admission after events of right eyelid and facial twitching were observed by the care team.
T72 1195-1365 Sentence denotes Frequent EEG seizures were captured independently from the left more than right frontal–temporal regions (Fig. 3) which eventually progressed to focal status epilepticus.
T73 1366-1411 Sentence denotes The majority of seizures were non-convulsive.
T74 1412-1474 Sentence denotes Seizure frequency improved after treatment with levetiracetam.
T75 1475-1647 Sentence denotes A non-contrast CT-brain demonstrated hypodensities within the supratentorial white matter, consistent with mild microvascular disease but without acute intracranial lesion.
T76 1648-1734 Sentence denotes He was unable to have an MRI brain performed due to an incompatible cardiac pacemaker.
T77 1735-1832 Sentence denotes Further vessel imaging was unable to be performed due to patients acute on chronic kidney injury.
T78 1833-1928 Sentence denotes A lumbar puncture was unable to be performed due to worsening coagulopathy (INR 3.8, PTT 73.5).
T79 1929-2055 Sentence denotes Patient remained on the ventilator, and after 20 days of ICU stay, the family opted for withdrawal of life-sustaining support.
T80 2056-2086 Sentence denotes Fig. 3 Electroencephalography.
T81 2087-2245 Sentence denotes Rhythmic discharges evolving in the left frontotemporal (a) region and spreading anteriorly and posteriorly (b) corresponding to right facial clonic movements