> top > docs > PMC:7253233 > spans > 8343-10596 > annotations

PMC:7253233 / 8343-10596 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
293 842-860 Gene denotes C-reactive protein Gene:1401
294 28-35 Species denotes patient Tax:9606
295 481-488 Species denotes patient Tax:9606
296 1800-1808 Species denotes patients Tax:9606
297 1937-1944 Species denotes Patient Tax:9606
298 775-779 Chemical denotes urea MESH:D014508
299 780-788 Chemical denotes nitrogen MESH:D009584
300 805-815 Chemical denotes creatinine MESH:D003404
301 1468-1481 Chemical denotes levetiracetam MESH:D000077287
302 41-78 Disease denotes chronic obstructive pulmonary disease MESH:D029424
303 80-109 Disease denotes venous thromboembolic disease MESH:D054556
304 120-131 Disease denotes heart block MESH:D006327
305 137-159 Disease denotes chronic kidney disease MESH:D051436
306 235-242 Disease denotes dyspnea MESH:D004417
307 312-319 Disease denotes hypoxic MESH:D000860
308 384-403 Disease denotes respiratory failure MESH:D012131
309 464-475 Disease denotes pneumonitis MESH:D011014
310 531-542 Disease denotes lymphopenia MESH:D008231
311 592-604 Disease denotes coagulopathy MESH:D001778
312 719-735 Disease denotes thrombocytopenia MESH:D013921
313 748-767 Disease denotes acute kidney injury MESH:D058186
314 972-980 Disease denotes COVID-19 MESH:C000657245
315 1216-1224 Disease denotes seizures MESH:D012640
316 1354-1372 Disease denotes status epilepticus MESH:D013226
317 1390-1398 Disease denotes seizures MESH:D012640
318 1408-1418 Disease denotes convulsive MESH:D012640
319 1420-1427 Disease denotes Seizure MESH:D012640
320 1826-1839 Disease denotes kidney injury MESH:D058186
321 1903-1915 Disease denotes coagulopathy MESH:D001778

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42 120-125 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T43 145-151 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T44 252-258 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T45 411-416 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T46 431-435 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T47 568-578 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T48 754-760 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T49 769-774 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T50 853-860 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T51 1143-1149 Body_part denotes eyelid http://purl.org/sig/ont/fma/fma54437
T52 1501-1506 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T53 1560-1572 Body_part denotes white matter http://purl.org/sig/ont/fma/fma83929
T54 1685-1690 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T55 1724-1741 Body_part denotes cardiac pacemaker http://purl.org/sig/ont/fma/fma9477
T56 1826-1832 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T32 120-125 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T33 145-151 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T34 411-416 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T35 431-435 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T36 754-760 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T37 769-774 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T38 1143-1149 Body_part denotes eyelid http://purl.obolibrary.org/obo/UBERON_0001711
T39 1501-1506 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T40 1560-1572 Body_part denotes white matter http://purl.obolibrary.org/obo/UBERON_0002316
T41 1685-1690 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T42 1751-1757 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T43 1826-1832 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T69 41-78 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T70 61-78 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T71 80-101 Disease denotes venous thromboembolic http://purl.obolibrary.org/obo/MONDO_0005399
T72 111-131 Disease denotes complete heart block http://purl.obolibrary.org/obo/MONDO_0000468
T73 137-159 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T74 145-159 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T76 384-403 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T77 464-475 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T78 531-542 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T79 592-604 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531
T80 719-735 Disease denotes thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0002049
T81 748-767 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T82 761-767 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T83 972-980 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T84 1354-1372 Disease denotes status epilepticus http://purl.obolibrary.org/obo/MONDO_0002125
T85 1833-1839 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T86 1903-1915 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T89 23-27 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T90 23-27 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T91 120-125 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T92 120-125 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T93 120-125 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T94 120-125 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T95 145-151 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T96 145-151 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T97 145-151 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T98 203-207 http://purl.obolibrary.org/obo/CLO_0001550 denotes a 10
T99 409-410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 411-416 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T101 431-435 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T102 431-435 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T103 737-740 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T104 754-760 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T105 754-760 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T106 754-760 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T107 769-774 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T108 769-774 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T109 909-910 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T110 963-967 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T111 1483-1484 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T112 1501-1506 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T113 1501-1506 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T114 1685-1690 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T115 1685-1690 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T116 1751-1757 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T117 1826-1832 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T118 1826-1832 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T119 1826-1832 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T120 1841-1842 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T121 2152-2153 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 2191-2202 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posteriorly
T123 2204-2205 http://purl.obolibrary.org/obo/CLO_0001021 denotes b

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T17 23-27 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T18 677-680 Chemical denotes PTT http://purl.obolibrary.org/obo/CHEBI_3088
T19 775-779 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T20 780-788 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T21 805-815 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T22 853-860 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23 1071-1074 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T24 1212-1215 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T25 1468-1481 Chemical denotes levetiracetam http://purl.obolibrary.org/obo/CHEBI_6437
T26 1926-1929 Chemical denotes PTT http://purl.obolibrary.org/obo/CHEBI_3088

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T49 41-78 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T50 87-109 Phenotype denotes thromboembolic disease http://purl.obolibrary.org/obo/HP_0001907
T51 111-131 Phenotype denotes complete heart block http://purl.obolibrary.org/obo/HP_0001709
T52 137-159 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T53 235-242 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T54 271-291 Phenotype denotes generalized weakness http://purl.obolibrary.org/obo/HP_0003324
T55 384-403 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T56 431-447 Phenotype denotes lung infiltrates http://purl.obolibrary.org/obo/HP_0002113
T57 531-542 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T58 592-604 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256
T59 689-705 Phenotype denotes elevated D-dimer http://purl.obolibrary.org/obo/HP_0033106
T60 719-735 Phenotype denotes thrombocytopenia http://purl.obolibrary.org/obo/HP_0001873
T61 748-767 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T62 1161-1170 Phenotype denotes twitching http://purl.obolibrary.org/obo/HP_0010546
T63 1216-1224 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250
T64 1354-1372 Phenotype denotes status epilepticus http://purl.obolibrary.org/obo/HP_0002133
T65 1390-1398 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250
T66 1420-1427 Phenotype denotes Seizure http://purl.obolibrary.org/obo/HP_0001250
T67 1903-1915 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T65 0-7 Sentence denotes Case #2
T66 8-292 Sentence denotes An 82-year-old male patient with chronic obstructive pulmonary disease, venous thromboembolic disease, complete heart block, and chronic kidney disease presented to the emergency department with a 10-day history of progressive dyspnea, altered mental status, and generalized weakness.
T67 293-346 Sentence denotes He was found to be hypoxic, febrile, and tachycardic.
T68 347-476 Sentence denotes He was intubated for acute hypoxemic respiratory failure with a chest X-ray showing lung infiltrates consistent with pneumonitis.
T69 477-908 Sentence denotes The patient’s laboratory results were significant for lymphopenia (WBC 3.26 k/μl, absolute lymphocyte count 0.70), coagulopathy (international normalised ratio (INR) 2.5, partial thromboplastin time (PTT) 53.9), elevated D-dimer (590 ng/mL), thrombocytopenia (132 k/μl), acute kidney injury (blood urea nitrogen (BUN) 47 mg/dL, creatinine 3.96 mg/dL), and elevated C-reactive protein initially 12.5 mg/L and increased to 26.2 mg/L.
T70 909-1031 Sentence denotes A nasopharyngeal swab polymerase chain reaction (PCR) test for COVID-19 was sent on admission and was positive 24 h later.
T71 1032-1202 Sentence denotes Continuous video electroencephalogram (EEG) monitoring was ordered on day 5 of admission after events of right eyelid and facial twitching were observed by the care team.
T72 1203-1373 Sentence denotes Frequent EEG seizures were captured independently from the left more than right frontal–temporal regions (Fig. 3) which eventually progressed to focal status epilepticus.
T73 1374-1419 Sentence denotes The majority of seizures were non-convulsive.
T74 1420-1482 Sentence denotes Seizure frequency improved after treatment with levetiracetam.
T75 1483-1655 Sentence denotes A non-contrast CT-brain demonstrated hypodensities within the supratentorial white matter, consistent with mild microvascular disease but without acute intracranial lesion.
T76 1656-1742 Sentence denotes He was unable to have an MRI brain performed due to an incompatible cardiac pacemaker.
T77 1743-1840 Sentence denotes Further vessel imaging was unable to be performed due to patients acute on chronic kidney injury.
T78 1841-1936 Sentence denotes A lumbar puncture was unable to be performed due to worsening coagulopathy (INR 3.8, PTT 73.5).
T79 1937-2063 Sentence denotes Patient remained on the ventilator, and after 20 days of ICU stay, the family opted for withdrawal of life-sustaining support.
T80 2064-2094 Sentence denotes Fig. 3 Electroencephalography.
T81 2095-2253 Sentence denotes Rhythmic discharges evolving in the left frontotemporal (a) region and spreading anteriorly and posteriorly (b) corresponding to right facial clonic movements