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PMC:7253233 / 2662-4238 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
137 0-47 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
138 49-59 Species denotes SARS-CoV-2 Tax:2697049
139 222-232 Species denotes SARS-CoV-2 Tax:2697049
140 661-669 Species denotes patients Tax:9606
141 722-730 Species denotes patients Tax:9606
142 900-908 Species denotes patients Tax:9606
143 1047-1055 Species denotes patients Tax:9606
144 1153-1161 Species denotes patients Tax:9606
145 1306-1314 Species denotes patients Tax:9606
146 1520-1528 Species denotes patients Tax:9606
147 244-268 Disease denotes Coronavirus disease 2019 MESH:C000657245
148 270-278 Disease denotes COVID-19 MESH:C000657245
149 675-683 Disease denotes COVID-19 MESH:C000657245
150 736-744 Disease denotes COVID-19 MESH:C000657245
151 768-784 Disease denotes systemic disease MESH:D034721
152 811-840 Disease denotes acute cerebrovascular disease MESH:D002561
153 842-862 Disease denotes acute encephalopathy MESH:D001927
154 868-892 Disease denotes skeletal muscle symptoms MESH:D004421
155 980-999 Disease denotes multi-organ failure MESH:D009102
156 1061-1075 Disease denotes encephalopathy MESH:D001927
157 1125-1133 Disease denotes seizures MESH:D012640
158 1229-1243 Disease denotes encephalopathy MESH:D001927
159 1418-1432 Disease denotes encephalopathy MESH:D001927
160 1438-1446 Disease denotes Seizures MESH:D012640
161 1492-1500 Disease denotes COVID-19 MESH:C000657245
162 1551-1563 Disease denotes brain injury MESH:D001930
163 1567-1575 Disease denotes epilepsy MESH:D004827

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 452-474 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T13 476-479 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T14 877-883 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T15 986-991 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T16 1248-1267 Body_part denotes corticospinal tract http://purl.org/sig/ont/fma/fma265580
T17 1551-1556 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T13 452-474 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T14 460-474 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T15 476-479 Body_part denotes CNS http://purl.obolibrary.org/obo/UBERON_0001017
T16 986-991 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T17 1248-1267 Body_part denotes corticospinal tract http://purl.obolibrary.org/obo/UBERON_0002707
T18 1551-1556 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 0-47 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T27 49-57 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 222-230 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 244-268 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T30 270-278 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 675-683 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 736-744 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 768-784 Disease denotes systemic disease http://purl.obolibrary.org/obo/MONDO_0015938
T34 817-840 Disease denotes cerebrovascular disease http://purl.obolibrary.org/obo/MONDO_0011057
T35 848-862 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T36 980-999 Disease denotes multi-organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T37 1061-1075 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T38 1229-1243 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T39 1418-1432 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T40 1492-1500 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 1551-1563 Disease denotes brain injury http://purl.obolibrary.org/obo/MONDO_0043510
T42 1557-1563 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T43 1567-1575 Disease denotes epilepsy http://purl.obolibrary.org/obo/MONDO_0005027

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T27 132-133 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 300-312 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T29 433-436 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T30 452-474 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T31 452-474 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T32 452-474 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T33 476-479 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T34 476-479 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T35 476-479 http://purl.obolibrary.org/obo/UBERON_0001017 denotes CNS
T36 868-883 http://purl.obolibrary.org/obo/UBERON_0001134 denotes skeletal muscle
T37 868-883 http://purl.obolibrary.org/obo/UBERON_0014892 denotes skeletal muscle
T38 868-883 http://www.ebi.ac.uk/efo/EFO_0000888 denotes skeletal muscle
T39 986-991 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T40 1280-1281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 1482-1483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 1551-1556 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T43 1551-1556 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T20 842-862 Phenotype denotes acute encephalopathy http://purl.obolibrary.org/obo/HP_0006846
T21 1061-1075 Phenotype denotes encephalopathy http://purl.obolibrary.org/obo/HP_0001298
T22 1113-1133 Phenotype denotes symptomatic seizures http://purl.obolibrary.org/obo/HP_0011145
T23 1229-1243 Phenotype denotes encephalopathy http://purl.obolibrary.org/obo/HP_0001298
T24 1418-1432 Phenotype denotes encephalopathy http://purl.obolibrary.org/obo/HP_0001298
T25 1438-1446 Phenotype denotes Seizures http://purl.obolibrary.org/obo/HP_0001250
T26 1567-1575 Phenotype denotes epilepsy http://purl.obolibrary.org/obo/HP_0001250

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-171 Sentence denotes Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emerged first in Wuhan, China, in 2019 and spread rapidly worldwide as a pandemic of the twenty-first century.
T28 172-317 Sentence denotes The symptoms and disease manifestations caused by SARS-CoV-2 were named Coronavirus disease 2019 (COVID-19) by the World Health Organization [1].
T29 318-549 Sentence denotes The neurological manifestations of this disease are not well known, and there is growing evidence that the disease has effects on the central nervous system (CNS) as detailed in retrospective reports from several centers worldwide.
T30 550-696 Sentence denotes An initial retrospective case series from Wuhan, China, showed that neurological manifestations are present in patients with COVID-19 disease [2].
T31 697-893 Sentence denotes In that series, 45.5% of patients with COVID-19 disease who had severe systemic disease burden also suffered from acute cerebrovascular disease, acute encephalopathy, and skeletal muscle symptoms.
T32 894-1000 Sentence denotes These patients also had higher levels of inflammatory markers and greater evidence of multi-organ failure.
T33 1001-1134 Sentence denotes However, the study did not elucidate how many patients with encephalopathy were monitored and treated for acute symptomatic seizures.
T34 1135-1274 Sentence denotes Another series of patients were reported in Strasbourg, France, with neurological features of encephalopathy and corticospinal tract signs.
T35 1275-1437 Sentence denotes Only a small proportion of the patients (8 out of 64) had electroencephalography performed, which demonstrated diffuse slowing consistent with encephalopathy [3].
T36 1438-1576 Sentence denotes Seizures have not been directly reported as a part of COVID-19 disease outside of patients with previously known brain injury or epilepsy.

2_test

Id Subject Object Predicate Lexical cue
32462412-32257431-75539777 314-315 32257431 denotes 1
32462412-32453517-75539778 1434-1435 32453517 denotes 3