> top > docs > PMC:7253232 > annotations

PMC:7253232 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 463-465 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T2 565-567 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T3 718-720 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T4 760-762 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T5 1459-1461 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T6 1538-1540 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T7 1944-1946 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 21-24 Disease denotes IVF MESH:C537182
3 62-70 Disease denotes COVID-19 MESH:C000657245
12 270-276 Species denotes people Tax:9606
13 970-977 Species denotes patient Tax:9606
14 409-414 Chemical denotes water MESH:D014867
15 453-461 Chemical denotes nitrogen MESH:D009584
16 463-465 Chemical denotes LN
17 185-193 Disease denotes COVID-19 MESH:C000657245
18 668-671 Disease denotes IVF MESH:C537182
19 1062-1069 Disease denotes ovarian MESH:D010049
22 1645-1655 Species denotes SARS-CoV-2 Tax:2697049
23 1656-1664 Species denotes patients Tax:9606
25 1873-1883 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 540-547 Body_part denotes embryos http://purl.org/sig/ont/fma/fma296970
T2 841-846 Body_part denotes sperm http://purl.org/sig/ont/fma/fma67338
T3 848-855 Body_part denotes oocytes http://purl.org/sig/ont/fma/fma18644
T4 860-867 Body_part denotes embryos http://purl.org/sig/ont/fma/fma296970
T5 1074-1080 Body_part denotes testis http://purl.org/sig/ont/fma/fma7210
T6 1081-1088 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T7 1692-1697 Body_part denotes semen http://purl.org/sig/ont/fma/fma62966
T8 1964-1969 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T9 1974-1981 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1074-1080 Body_part denotes testis http://purl.obolibrary.org/obo/UBERON_0000473
T2 1692-1697 Body_part denotes semen http://purl.obolibrary.org/obo/UBERON_0001968

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 62-70 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 185-193 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 463-465 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T4 565-567 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T5 718-720 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T6 760-762 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T7 1451-1458 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T8 1459-1461 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T9 1538-1540 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T10 1559-1566 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T11 1645-1653 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 1873-1881 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 1944-1946 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 81-82 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T3 104-107 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 142-154 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T5 293-298 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 372-373 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 374-379 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 383-384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 495-498 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 540-547 http://purl.obolibrary.org/obo/UBERON_0000922 denotes embryos
T11 601-602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 706-711 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 860-867 http://purl.obolibrary.org/obo/UBERON_0000922 denotes embryos
T14 936-941 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 1074-1080 http://www.ebi.ac.uk/efo/EFO_0000984 denotes testis
T16 1090-1094 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T17 1235-1240 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T18 1432-1439 http://purl.obolibrary.org/obo/CLO_0001407 denotes 5]. (2)
T19 1677-1682 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T20 1757-1758 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1860-1867 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T22 1964-1969 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 409-414 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T2 453-461 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T3 463-465 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T5 565-567 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T7 718-720 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T9 760-762 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T11 1459-1461 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T13 1538-1540 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T15 1944-1946 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 648-655 http://purl.obolibrary.org/obo/GO_0051235 denotes storage
T2 1472-1479 http://purl.obolibrary.org/obo/GO_0051235 denotes storage
T3 1594-1601 http://purl.obolibrary.org/obo/GO_0051235 denotes storage
T4 1733-1740 http://purl.obolibrary.org/obo/GO_0051235 denotes storage

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-79 Sentence denotes A recommendation for IVF lab practice in light of the current COVID-19 pandemic
T2 81-194 Sentence denotes A global health threat has been declared by the World Health Organization due to the recent outbreak of COVID-19.
T3 195-346 Sentence denotes Although the exact transmission mechanism is yet unknown, it is known that people positive to the virus are contagious due to small aerosols spreading.
T4 347-467 Sentence denotes According to Adrian [1], a virus in a thin layer of (1 μm) of water will vitrify upon cooling into liquid nitrogen (LN).
T5 468-587 Sentence denotes Furthermore, Bielanski [2] has demonstrated that viral contamination of embryos cryopreserved in LN raises real threat.
T6 588-677 Sentence denotes This data is a cause for concern regarding the current cryo-storage practice in IVF labs.
T7 678-763 Sentence denotes If aerosol drops containing virus touch LN, they will vitrify and contaminate the LN.
T8 764-1258 Sentence denotes Four possible scenarios may be possible: (1) vitrified drops can contaminate sperm, oocytes, or embryos which are cryopreserved by open system vitrification, and also, the virus could be transferred to the patient following warming; (2) it can cross-contaminate samples with ACE-2 receptor such as ovarian and testis tissues [3, 4]; (3) it may contaminate the operator upon warming; and (4) it may not cause any contamination if the number of viral load is low or if the virus does not survive.
T9 1259-1606 Sentence denotes In order to overcome the above scenarios, several solutions may be applicable: (1) The use of closed system vitrification systems incorporating CBS straws or other systems [5]. (2) The use of sterile LN and vapor storage [6]. (3) Another option is the use of UV sterilization of LN [7] or the use of sterile liquid air for cooling and storage [8].
T10 1607-1839 Sentence denotes Finally, if it is true that 15–26% of SARS-CoV-2 patients present the virus in their semen [9], then washing, separation, and storage (quarantine) in a separate container or in special canister [8] should be done as safety measures.
T11 1840-2069 Sentence denotes Until properties of viruses like SARS-CoV-2 are fully investigated with respect to the interaction with LN and reproductive cells and tissues, cautionary measures as those mentioned above should be taken under serious advisement.
T12 2071-2087 Sentence denotes Publisher’s note
T13 2088-2206 Sentence denotes Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.