PMC:7252096 / 97020-97588
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1079 | 67-69 | Body_part | denotes | v1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1591 | 345-347 | http://purl.obolibrary.org/obo/CLO_0009287 | denotes | TE |
| T1592 | 435-436 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T64977 | 9-11 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T79129 | 21-23 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T9601 | 121-127 | Chemical | denotes | buffer | http://purl.obolibrary.org/obo/CHEBI_35225 |
| T7108 | 157-176 | Chemical | denotes | polyethylene glycol | http://purl.obolibrary.org/obo/CHEBI_46793 |
| T23785 | 157-169 | Chemical | denotes | polyethylene | http://purl.obolibrary.org/obo/CHEBI_53226|http://purl.obolibrary.org/obo/CHEBI_53227|http://purl.obolibrary.org/obo/CHEBI_60034 |
| T40008 | 170-176 | Chemical | denotes | glycol | http://purl.obolibrary.org/obo/CHEBI_13643 |
| T37602 | 178-181 | Chemical | denotes | PEG | http://purl.obolibrary.org/obo/CHEBI_46793 |
| T47327 | 283-287 | Chemical | denotes | NaOH | http://purl.obolibrary.org/obo/CHEBI_32145 |
| T51634 | 345-347 | Chemical | denotes | TE | http://purl.obolibrary.org/obo/CHEBI_74857 |
| T68917 | 489-492 | Chemical | denotes | PEG | http://purl.obolibrary.org/obo/CHEBI_46793 |
| T99070 | 502-504 | Chemical | denotes | dN | http://purl.obolibrary.org/obo/CHEBI_33793 |
| T16126 | 510-525 | Chemical | denotes | oligonucleotide | http://purl.obolibrary.org/obo/CHEBI_7754 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T81 | 217-226 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
| T82 | 384-393 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
| T83 | 459-474 | http://purl.obolibrary.org/obo/GO_0003887 | denotes | Klenow Fragment |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T694 | 0-11 | Sentence | denotes | Seq-Well S3 |
| T695 | 12-99 | Sentence | denotes | Seq-Well S3 modified the following protocol steps from v1, above (Hughes et al., 2019). |
| T696 | 100-190 | Sentence | denotes | First, hybridization buffer was supplanted with 8% (v/v) polyethylene glycol (PEG, Sigma). |
| T697 | 191-315 | Sentence | denotes | Second, after exonuclease digestion, bead-associated cDNA was denatured for 5 min in 0.2 mM NaOH with end over end rotation. |
| T698 | 316-568 | Sentence | denotes | Next, beads were washed with TE + 0.01% tween-20, and second strand synthesis was carried out by resuspending beads in a master mix containing Klenow Fragment (NEB), dNTPs, PEG, and the dN-SMRT oligonucleotide to enable random priming off of the beads. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2608 | 505-509 | Gene | denotes | SMRT | Gene:9612 |
| 2609 | 157-176 | Chemical | denotes | polyethylene glycol | MESH:D011092 |
| 2610 | 178-181 | Chemical | denotes | PEG | MESH:D011092 |
| 2611 | 283-287 | Chemical | denotes | NaOH | |
| 2612 | 356-364 | Chemical | denotes | tween-20 | MESH:D011136 |
| 2613 | 482-487 | Chemical | denotes | dNTPs | |
| 2614 | 489-492 | Chemical | denotes | PEG | MESH:D011092 |
| 2615 | 510-525 | Chemical | denotes | oligonucleotide | MESH:D009841 |