PMC:7252096 / 93302-94913 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7252096","sourcedb":"PMC","sourceid":"7252096","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7252096","text":"Nasal Washes during Influenza Infection\nNasal washes were obtained from adult healthy controls and from adults with diagnosis of acute influenza A or B by rapid antigen test (Flu A or B antigen, direct fluorescence antigen test) and/or by respiratory virus panel (PCR testing for influenza A, influenza A H1, influenza A H3, influenza B, adenovirus, metapneumovirus, respiratory syncytial virus A, respiratory syncytial virus B, rhino/enterovirus, parainfluenza 1, parainfluenza 2, parainfluenza 3), who show symptoms up to seven days (Cao et al., 2020). Samples were obtained by irrigation of each naris with up to 10 mL of saline, and collected in a single container. The sample was then transported to the research laboratory for processing. Upon receipt, the sample was immediately stored on ice and 10 mL cell growth media (DMEM or RPMI1640 with 10% fetal bovine serum) was added. The material was strained using a 40 μm nylon cell strainer (Corning) into a 50 mL centrifuge tube. Cells were pelleted at 1300 rpm for 10 min at 4°C. All but 1 mL of supernatant was discarded, the pellet resuspended in the remaining 1 mL of supernatant, and material was transferred to an Eppendorf tube and pelleted at 2000 rpm for 5 min. If the pellet contained visible blood, 200 μL of RBC lysis solution (ACK buffer, Thermo Fisher) was added to resuspend the pellet and incubated at room temperature for 2 min, after which 1 mL of cell media was added, and the cells were pelleted at 2000 rpm for 5 min. The final pellet was resuspended in up to 1 mL of media and quantified before performing scRNA-seq with Seq-Well v1.","divisions":[{"label":"title","span":{"begin":0,"end":39}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1056","span":{"begin":321,"end":323},"obj":"Body_part"},{"id":"T1057","span":{"begin":810,"end":814},"obj":"Body_part"},{"id":"T1058","span":{"begin":868,"end":873},"obj":"Body_part"},{"id":"T1059","span":{"begin":932,"end":936},"obj":"Body_part"},{"id":"T1060","span":{"begin":986,"end":991},"obj":"Body_part"},{"id":"T1061","span":{"begin":1259,"end":1264},"obj":"Body_part"},{"id":"T1062","span":{"begin":1422,"end":1426},"obj":"Body_part"},{"id":"T1063","span":{"begin":1452,"end":1457},"obj":"Body_part"},{"id":"T1064","span":{"begin":1608,"end":1610},"obj":"Body_part"}],"attributes":[{"id":"A1056","pred":"fma_id","subj":"T1056","obj":"http://purl.org/sig/ont/fma/fma84131"},{"id":"A1057","pred":"fma_id","subj":"T1057","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1058","pred":"fma_id","subj":"T1058","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A1059","pred":"fma_id","subj":"T1059","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1060","pred":"fma_id","subj":"T1060","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1061","pred":"fma_id","subj":"T1061","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A1062","pred":"fma_id","subj":"T1062","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1063","pred":"fma_id","subj":"T1063","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A1064","pred":"fma_id","subj":"T1064","obj":"http://purl.org/sig/ont/fma/fma13444"},{"id":"A1065","pred":"fma_id","subj":"T1064","obj":"http://purl.org/sig/ont/fma/fma68614"},{"subj":"T1056","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1057","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1058","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1059","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1060","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1061","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1062","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1063","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T1064","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T228","span":{"begin":599,"end":604},"obj":"Body_part"},{"id":"T229","span":{"begin":868,"end":873},"obj":"Body_part"},{"id":"T230","span":{"begin":980,"end":984},"obj":"Body_part"},{"id":"T231","span":{"begin":1186,"end":1190},"obj":"Body_part"},{"id":"T232","span":{"begin":1259,"end":1264},"obj":"Body_part"}],"attributes":[{"id":"A228","pred":"uberon_id","subj":"T228","obj":"http://purl.obolibrary.org/obo/UBERON_0000003"},{"id":"A229","pred":"uberon_id","subj":"T229","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A230","pred":"uberon_id","subj":"T230","obj":"http://purl.obolibrary.org/obo/UBERON_0000025"},{"id":"A231","pred":"uberon_id","subj":"T231","obj":"http://purl.obolibrary.org/obo/UBERON_0000025"},{"id":"A232","pred":"uberon_id","subj":"T232","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"subj":"T228","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T229","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T230","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T231","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T232","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T362","span":{"begin":20,"end":39},"obj":"Disease"},{"id":"T363","span":{"begin":135,"end":144},"obj":"Disease"},{"id":"T364","span":{"begin":280,"end":289},"obj":"Disease"},{"id":"T365","span":{"begin":293,"end":302},"obj":"Disease"},{"id":"T366","span":{"begin":309,"end":318},"obj":"Disease"},{"id":"T367","span":{"begin":325,"end":334},"obj":"Disease"}],"attributes":[{"id":"A362","pred":"mondo_id","subj":"T362","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A363","pred":"mondo_id","subj":"T363","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A364","pred":"mondo_id","subj":"T364","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A365","pred":"mondo_id","subj":"T365","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A366","pred":"mondo_id","subj":"T366","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A367","pred":"mondo_id","subj":"T367","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"subj":"T362","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T363","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T364","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T365","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T366","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T367","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1544","span":{"begin":145,"end":146},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1545","span":{"begin":150,"end":151},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T1546","span":{"begin":169,"end":173},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T1547","span":{"begin":179,"end":180},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1548","span":{"begin":184,"end":185},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T1549","span":{"begin":223,"end":227},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T1550","span":{"begin":251,"end":256},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T1551","span":{"begin":268,"end":275},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T1552","span":{"begin":290,"end":291},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1553","span":{"begin":303,"end":304},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1554","span":{"begin":319,"end":320},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1555","span":{"begin":335,"end":336},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T1556","span":{"begin":389,"end":394},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T1557","span":{"begin":395,"end":396},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1558","span":{"begin":420,"end":425},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T1559","span":{"begin":426,"end":427},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T1560","span":{"begin":650,"end":651},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1561","span":{"begin":810,"end":814},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1562","span":{"begin":918,"end":919},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1563","span":{"begin":932,"end":936},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1564","span":{"begin":961,"end":962},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1565","span":{"begin":980,"end":984},"obj":"http://purl.obolibrary.org/obo/UBERON_0000025"},{"id":"T1566","span":{"begin":986,"end":991},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1567","span":{"begin":1032,"end":1035},"obj":"http://purl.obolibrary.org/obo/CLO_0001387"},{"id":"T1568","span":{"begin":1186,"end":1190},"obj":"http://purl.obolibrary.org/obo/UBERON_0000025"},{"id":"T1569","span":{"begin":1259,"end":1264},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T1570","span":{"begin":1259,"end":1264},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T1571","span":{"begin":1276,"end":1279},"obj":"http://purl.obolibrary.org/obo/CL_0000232"},{"id":"T1572","span":{"begin":1422,"end":1426},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1573","span":{"begin":1452,"end":1457},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1544","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1545","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1546","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1547","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1548","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1549","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1550","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1551","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1552","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1553","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1554","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1555","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1556","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1557","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1558","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1559","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1560","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1561","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1562","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1563","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1564","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1565","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1566","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1567","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1568","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1569","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1570","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1571","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1572","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1573","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T33620","span":{"begin":161,"end":168},"obj":"Chemical"},{"id":"T153","span":{"begin":184,"end":193},"obj":"Chemical"},{"id":"T58797","span":{"begin":186,"end":193},"obj":"Chemical"},{"id":"T55345","span":{"begin":215,"end":222},"obj":"Chemical"},{"id":"T6337","span":{"begin":1286,"end":1294},"obj":"Chemical"},{"id":"T69995","span":{"begin":1300,"end":1306},"obj":"Chemical"}],"attributes":[{"id":"A1061","pred":"chebi_id","subj":"T33620","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"},{"id":"A7821","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_139353"},{"id":"A19684","pred":"chebi_id","subj":"T58797","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"},{"id":"A89137","pred":"chebi_id","subj":"T55345","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"},{"id":"A51772","pred":"chebi_id","subj":"T6337","obj":"http://purl.obolibrary.org/obo/CHEBI_75958"},{"id":"A19992","pred":"chebi_id","subj":"T69995","obj":"http://purl.obolibrary.org/obo/CHEBI_35225"},{"subj":"T33620","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T153","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T58797","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T55345","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6337","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T69995","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T71","span":{"begin":690,"end":701},"obj":"http://purl.obolibrary.org/obo/GO_0006810"},{"id":"T72","span":{"begin":810,"end":821},"obj":"http://purl.obolibrary.org/obo/GO_0016049"},{"id":"T73","span":{"begin":815,"end":821},"obj":"http://purl.obolibrary.org/obo/GO_0040007"},{"id":"T74","span":{"begin":1280,"end":1285},"obj":"http://purl.obolibrary.org/obo/GO_0019835"}],"attributes":[{"subj":"T71","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T72","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T73","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T74","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T667","span":{"begin":0,"end":39},"obj":"Sentence"},{"id":"T668","span":{"begin":40,"end":554},"obj":"Sentence"},{"id":"T669","span":{"begin":555,"end":669},"obj":"Sentence"},{"id":"T670","span":{"begin":670,"end":744},"obj":"Sentence"},{"id":"T671","span":{"begin":745,"end":885},"obj":"Sentence"},{"id":"T672","span":{"begin":886,"end":985},"obj":"Sentence"},{"id":"T673","span":{"begin":986,"end":1036},"obj":"Sentence"},{"id":"T674","span":{"begin":1037,"end":1226},"obj":"Sentence"},{"id":"T675","span":{"begin":1227,"end":1494},"obj":"Sentence"},{"id":"T676","span":{"begin":1495,"end":1611},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T667","pred":"source","obj":"LitCovid-sentences"},{"subj":"T668","pred":"source","obj":"LitCovid-sentences"},{"subj":"T669","pred":"source","obj":"LitCovid-sentences"},{"subj":"T670","pred":"source","obj":"LitCovid-sentences"},{"subj":"T671","pred":"source","obj":"LitCovid-sentences"},{"subj":"T672","pred":"source","obj":"LitCovid-sentences"},{"subj":"T673","pred":"source","obj":"LitCovid-sentences"},{"subj":"T674","pred":"source","obj":"LitCovid-sentences"},{"subj":"T675","pred":"source","obj":"LitCovid-sentences"},{"subj":"T676","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"2552","span":{"begin":20,"end":29},"obj":"Species"},{"id":"2553","span":{"begin":30,"end":39},"obj":"Disease"},{"id":"2567","span":{"begin":1296,"end":1299},"obj":"Gene"},{"id":"2568","span":{"begin":293,"end":323},"obj":"Gene"},{"id":"2569","span":{"begin":335,"end":348},"obj":"Species"},{"id":"2570","span":{"begin":367,"end":396},"obj":"Species"},{"id":"2571","span":{"begin":398,"end":427},"obj":"Species"},{"id":"2572","span":{"begin":135,"end":144},"obj":"Species"},{"id":"2573","span":{"begin":239,"end":250},"obj":"Species"},{"id":"2574","span":{"begin":280,"end":289},"obj":"Species"},{"id":"2575","span":{"begin":325,"end":334},"obj":"Species"},{"id":"2576","span":{"begin":435,"end":446},"obj":"Species"},{"id":"2577","span":{"begin":625,"end":631},"obj":"Chemical"},{"id":"2578","span":{"begin":829,"end":833},"obj":"Chemical"},{"id":"2579","span":{"begin":837,"end":845},"obj":"Chemical"}],"attributes":[{"id":"A2552","pred":"tao:has_database_id","subj":"2552","obj":"Tax:11520"},{"id":"A2553","pred":"tao:has_database_id","subj":"2553","obj":"MESH:D007239"},{"id":"A2567","pred":"tao:has_database_id","subj":"2567","obj":"Gene:10188"},{"id":"A2569","pred":"tao:has_database_id","subj":"2569","obj":"Tax:740971"},{"id":"A2570","pred":"tao:has_database_id","subj":"2570","obj":"Tax:1439707"},{"id":"A2571","pred":"tao:has_database_id","subj":"2571","obj":"Tax:1615611"},{"id":"A2572","pred":"tao:has_database_id","subj":"2572","obj":"Tax:11520"},{"id":"A2573","pred":"tao:has_database_id","subj":"2573","obj":"Tax:12814"},{"id":"A2574","pred":"tao:has_database_id","subj":"2574","obj":"Tax:11520"},{"id":"A2575","pred":"tao:has_database_id","subj":"2575","obj":"Tax:11520"},{"id":"A2576","pred":"tao:has_database_id","subj":"2576","obj":"Tax:39054"},{"id":"A2577","pred":"tao:has_database_id","subj":"2577","obj":"MESH:D012965"},{"subj":"2552","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2553","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2567","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2568","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2569","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2570","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2571","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2572","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2573","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2574","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2575","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2576","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2577","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2578","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2579","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ecaf93","default":true},{"id":"LitCovid-PD-UBERON","color":"#9593ec"},{"id":"LitCovid-PD-MONDO","color":"#aaec93"},{"id":"LitCovid-PD-CLO","color":"#ec93c4"},{"id":"LitCovid-PD-CHEBI","color":"#93deec"},{"id":"LitCovid-PD-GO-BP","color":"#ecdf93"},{"id":"LitCovid-sentences","color":"#c593ec"},{"id":"LitCovid-PubTator","color":"#93ecab"}]}]}}