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PMC:7252096 / 88955-89743 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1011 31-35 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T1012 36-42 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T1013 53-56 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T1014 608-613 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T206 31-35 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T207 36-42 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T355 50-52 Disease denotes TB http://purl.obolibrary.org/obo/MONDO_0018076
T356 65-67 Disease denotes TB http://purl.obolibrary.org/obo/MONDO_0018076
T357 198-203 Disease denotes RP-10 http://purl.obolibrary.org/obo/MONDO_0008379
T358 634-639 Disease denotes RP-10 http://purl.obolibrary.org/obo/MONDO_0008379

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1486 31-35 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T1487 31-35 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T1488 476-477 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1489 505-506 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1490 608-613 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14251 198-200 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T69462 297-303 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T37713 634-636 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T13716 702-713 Chemical denotes trypan blue http://purl.obolibrary.org/obo/CHEBI_78897
T89927 773-775 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T58 287-296 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion
T59 346-353 http://purl.obolibrary.org/obo/GO_0004530 denotes DNase I

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T634 0-152 Sentence denotes Surgical samples from diseased lung tissue (n = 3 TB+HIV+; n = 3 TB+; n = 2 non-infected patients) were processed as described in (Ardain et al., 2019).
T635 153-422 Sentence denotes Briefly, each sample was collected into cold RP-10 (RPMI (Sigma-Aldrich) + 10% FBS), minced, and incubated for 25-30 min at 37°C with digestion buffer containing collagenase D (Sigma-Aldrich), DNase I (Sigma-Aldrich) in RPMI 1640 (Sigma-Aldrich) with 10% FBS (Hyclone).
T636 423-579 Sentence denotes Following incubation, samples were homogenized using a GentleMACS, filtered using a 70 μm metal strainer, and pelleted by centrifugation at 400 g for 5 min.
T637 580-788 Sentence denotes After obtaining the pellet, cells were resuspended in RP-10, passed through another 70μm strainer (Corning), stained with trypan blue, and then counted and diluted for scRNA-seq using Seq-Well S3 (see below).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2468 198-203 Gene denotes RP-10 Gene:3614
2469 634-639 Gene denotes RP-10 Gene:3614
2470 89-97 Species denotes patients Tax:9606
2471 53-56 Species denotes HIV Tax:12721
2472 702-713 Chemical denotes trypan blue MESH:D014343
2473 80-88 Disease denotes infected MESH:D007239

2_test

Id Subject Object Predicate Lexical cue
32413319-31168092-20790568 146-150 31168092 denotes 2019