PMC:7252096 / 87678-88387
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T989 | 13-19 | Body_part | denotes | Organs | http://purl.org/sig/ont/fma/fma67498 |
| T990 | 21-32 | Body_part | denotes | Bone Marrow | http://purl.org/sig/ont/fma/fma9608 |
| T991 | 44-55 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T992 | 44-49 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T993 | 57-63 | Body_part | denotes | spleen | http://purl.org/sig/ont/fma/fma7196 |
| T994 | 69-80 | Body_part | denotes | bone marrow | http://purl.org/sig/ont/fma/fma9608 |
| T995 | 224-229 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T996 | 299-303 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T997 | 316-322 | Body_part | denotes | Spleen | http://purl.org/sig/ont/fma/fma7196 |
| T998 | 324-335 | Body_part | denotes | bone marrow | http://purl.org/sig/ont/fma/fma9608 |
| T999 | 447-458 | Body_part | denotes | bone marrow | http://purl.org/sig/ont/fma/fma9608 |
| T1000 | 467-472 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T1001 | 597-602 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T1002 | 694-696 | Body_part | denotes | v1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T191 | 13-19 | Body_part | denotes | Organs | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T192 | 21-32 | Body_part | denotes | Bone Marrow | http://purl.obolibrary.org/obo/UBERON_0002371 |
| T193 | 44-55 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T194 | 44-49 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T195 | 57-63 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |
| T196 | 69-80 | Body_part | denotes | bone marrow | http://purl.obolibrary.org/obo/UBERON_0002371 |
| T197 | 316-322 | Body_part | denotes | Spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |
| T198 | 324-335 | Body_part | denotes | bone marrow | http://purl.obolibrary.org/obo/UBERON_0002371 |
| T199 | 447-458 | Body_part | denotes | bone marrow | http://purl.obolibrary.org/obo/UBERON_0002371 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T350 | 213-215 | Disease | denotes | LN | http://purl.obolibrary.org/obo/MONDO_0002486 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1454 | 4-19 | http://purl.obolibrary.org/obo/UBERON_0004177 | denotes | Lymphoid Organs |
| T1455 | 21-25 | http://purl.obolibrary.org/obo/UBERON_0002481 | denotes | Bone |
| T1456 | 44-55 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
| T1457 | 57-63 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
| T1458 | 69-73 | http://purl.obolibrary.org/obo/UBERON_0002481 | denotes | bone |
| T1459 | 101-102 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1460 | 134-135 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1461 | 224-229 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1462 | 290-291 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1463 | 299-303 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T1464 | 316-322 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | Spleen |
| T1465 | 324-328 | http://purl.obolibrary.org/obo/UBERON_0002481 | denotes | bone |
| T1466 | 447-451 | http://purl.obolibrary.org/obo/UBERON_0002481 | denotes | bone |
| T1467 | 467-472 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1468 | 492-493 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1469 | 597-602 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T37446 | 213-215 | Chemical | denotes | LN | http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529 |
| T49328 | 511-513 | Chemical | denotes | GE | http://purl.obolibrary.org/obo/CHEBI_73801 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T57 | 369-374 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | lysis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T623 | 0-39 | Sentence | denotes | NHP Lymphoid Organs, Bone Marrow, PBMCs |
| T624 | 40-212 | Sentence | denotes | All lymph nodes, spleen, and bone marrow were ground through a metal strainer, transferred to a conical in RPMI + 10% FBS, and pelleted by centrifugation at 400 g x 10 min. |
| T625 | 213-315 | Sentence | denotes | LN-derived cells were resuspended in RPMI + 10% FBS, counted and prepared as a single cell suspension. |
| T626 | 316-436 | Sentence | denotes | Spleen, bone marrow, and PBMCs were subjected to ACK lysis for 10 min at room temperature, quenched with RPMI + 10% FBS. |
| T627 | 437-596 | Sentence | denotes | PBMCs and bone marrow derived cells were purified over a ficoll gradient (GE Healthcare) by centrifuging at 400 g for 20 min at room temperature with no brake. |
| T628 | 597-709 | Sentence | denotes | Cells were then resuspended in RPMI + 10% FBS, counted, and diluted for scRNA-seq using Seq-Well v1 (see below). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2439 | 365-368 | Gene | denotes | ACK | Gene:10188 |
| 2440 | 147-151 | Chemical | denotes | RPMI | |
| 2441 | 250-254 | Chemical | denotes | RPMI | |
| 2442 | 421-425 | Chemical | denotes | RPMI | |
| 2443 | 628-632 | Chemical | denotes | RPMI |