PMC:7252096 / 79823-80984 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7252096","sourcedb":"PMC","sourceid":"7252096","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7252096","text":"In Table S9 , we provide a guide to all datasets analyzed in this paper as well as links to each individual dataset for download with the main landing page here: https://singlecell.broadinstitute.org/single_cell?scpbr=the-alexandria-project. To download the data from the portal, follow the link to the visualization page, sign in a free account in the portal using a Google apps enabled email address, and select the ‘Download’ tab in the study. Downloadable datasets include both raw and normalized cell x gene matrices, as well as relevant metadata. These datasets are additionally available here to facilitate downloading: https://drive.google.com/drive/folders/1bxCIqNeZ7wLuVOT16gphwj98_cc9KhrV?usp=sharing. We have also posted these cell x gene matrices to Chan Zuckerberg Initiative cellxgene (https://chanzuckerberg.github.io/cellxgene/posts/cellxgene_cziscience_com) and the Broad Institute Single Cell COVID-19 portal (https://singlecell.broadinstitute.org/single_cell/covid19) as leading community efforts. FASTQ files and cell x gene matrices for NHP and murine datasets, and cell x gene matrices for human datasets, are available at GEO: GSE148829.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T924","span":{"begin":501,"end":505},"obj":"Body_part"},{"id":"T925","span":{"begin":508,"end":512},"obj":"Body_part"},{"id":"T926","span":{"begin":739,"end":743},"obj":"Body_part"},{"id":"T927","span":{"begin":746,"end":750},"obj":"Body_part"},{"id":"T928","span":{"begin":907,"end":911},"obj":"Body_part"},{"id":"T929","span":{"begin":1034,"end":1038},"obj":"Body_part"},{"id":"T930","span":{"begin":1041,"end":1045},"obj":"Body_part"},{"id":"T931","span":{"begin":1088,"end":1092},"obj":"Body_part"},{"id":"T932","span":{"begin":1095,"end":1099},"obj":"Body_part"}],"attributes":[{"id":"A924","pred":"fma_id","subj":"T924","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A925","pred":"fma_id","subj":"T925","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A926","pred":"fma_id","subj":"T926","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A927","pred":"fma_id","subj":"T927","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A928","pred":"fma_id","subj":"T928","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A929","pred":"fma_id","subj":"T929","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A930","pred":"fma_id","subj":"T930","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A931","pred":"fma_id","subj":"T931","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A932","pred":"fma_id","subj":"T932","obj":"http://purl.org/sig/ont/fma/fma74402"},{"subj":"T924","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T925","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T926","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T927","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T928","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T929","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T930","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T931","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T932","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T338","span":{"begin":912,"end":920},"obj":"Disease"}],"attributes":[{"id":"A338","pred":"mondo_id","subj":"T338","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"subj":"T338","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1352","span":{"begin":9,"end":11},"obj":"http://purl.obolibrary.org/obo/CLO_0008935"},{"id":"T1353","span":{"begin":25,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1354","span":{"begin":331,"end":332},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1355","span":{"begin":366,"end":367},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1356","span":{"begin":501,"end":505},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1357","span":{"begin":508,"end":512},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1358","span":{"begin":739,"end":743},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1359","span":{"begin":746,"end":750},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1360","span":{"begin":907,"end":911},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1361","span":{"begin":1034,"end":1038},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1362","span":{"begin":1041,"end":1045},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1363","span":{"begin":1088,"end":1092},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1364","span":{"begin":1095,"end":1099},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1365","span":{"begin":1113,"end":1118},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"attributes":[{"subj":"T1352","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1353","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1354","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1355","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1356","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1357","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1358","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1359","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1360","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1361","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1362","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1363","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1364","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1365","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T567","span":{"begin":0,"end":241},"obj":"Sentence"},{"id":"T568","span":{"begin":242,"end":446},"obj":"Sentence"},{"id":"T569","span":{"begin":447,"end":552},"obj":"Sentence"},{"id":"T570","span":{"begin":553,"end":712},"obj":"Sentence"},{"id":"T571","span":{"begin":713,"end":1017},"obj":"Sentence"},{"id":"T572","span":{"begin":1018,"end":1161},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T567","pred":"source","obj":"LitCovid-sentences"},{"subj":"T568","pred":"source","obj":"LitCovid-sentences"},{"subj":"T569","pred":"source","obj":"LitCovid-sentences"},{"subj":"T570","pred":"source","obj":"LitCovid-sentences"},{"subj":"T571","pred":"source","obj":"LitCovid-sentences"},{"subj":"T572","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"2335","span":{"begin":1067,"end":1073},"obj":"Species"},{"id":"2336","span":{"begin":1113,"end":1118},"obj":"Species"},{"id":"2337","span":{"begin":912,"end":920},"obj":"Disease"}],"attributes":[{"id":"A2335","pred":"tao:has_database_id","subj":"2335","obj":"Tax:10090"},{"id":"A2336","pred":"tao:has_database_id","subj":"2336","obj":"Tax:9606"},{"id":"A2337","pred":"tao:has_database_id","subj":"2337","obj":"MESH:C000657245"},{"subj":"2335","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2336","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2337","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93d9","default":true},{"id":"LitCovid-PD-MONDO","color":"#93ece4"},{"id":"LitCovid-PD-CLO","color":"#ecca93"},{"id":"LitCovid-sentences","color":"#b093ec"},{"id":"LitCovid-PubTator","color":"#93ec96"}]}]}}