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PMC:7252096 / 50348-52055 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T643 108-113 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T644 173-178 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T645 190-206 Body_part denotes nasal epithelium http://purl.org/sig/ont/fma/fma63140
T646 196-206 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T647 349-352 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T648 369-372 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T649 404-409 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T650 513-518 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T651 546-551 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T652 597-601 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T653 719-735 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T654 730-735 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T655 750-755 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T656 1014-1019 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T657 1134-1136 Body_part denotes v1 http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614
T659 1152-1157 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T660 1216-1228 Body_part denotes goblet cells http://purl.org/sig/ont/fma/fma13148
T661 1223-1228 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T662 1246-1251 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T663 1301-1306 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T664 1357-1362 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T665 1448-1451 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T666 1480-1483 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T667 1485-1490 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T668 1544-1547 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T669 1661-1664 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T102 190-206 Body_part denotes nasal epithelium http://purl.obolibrary.org/obo/UBERON_0005384
T103 196-206 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T181 127-146 Disease denotes Influenza Infection http://purl.obolibrary.org/obo/MONDO_0005812
T182 284-292 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T183 284-288 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T184 1094-1103 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T185 1111-1120 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T186 1259-1268 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T187 1312-1321 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T188 1368-1377 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T189 1390-1399 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T190 1521-1530 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T899 108-113 http://purl.obolibrary.org/obo/GO_0005623 denotes Cells
T900 121-126 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T901 148-149 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T902 173-178 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T903 184-189 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T904 196-206 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T905 217-218 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T906 243-244 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T907 404-409 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T908 479-484 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T909 513-518 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T910 546-551 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T911 576-580 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T912 597-606 http://purl.obolibrary.org/obo/CL_0000000 denotes cell-type
T913 616-621 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T914 660-665 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T915 719-729 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T916 730-735 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T917 750-755 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T918 873-877 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T919 915-916 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T920 955-960 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T921 1014-1019 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T922 1049-1055 http://purl.obolibrary.org/obo/CLO_0007919 denotes n = 18
T923 1049-1055 http://purl.obolibrary.org/obo/CLO_0007920 denotes n = 18
T924 1056-1061 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T925 1104-1105 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T926 1109-1110 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T927 1152-1157 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T928 1223-1228 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T929 1246-1251 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T930 1301-1306 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T931 1357-1362 http://purl.obolibrary.org/obo/GO_0005623 denotes Cells
T932 1378-1379 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T933 1400-1401 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T934 1485-1490 http://purl.obolibrary.org/obo/GO_0005623 denotes Cells
T935 1531-1532 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T936 1536-1537 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T937 1592-1596 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T938 1683-1685 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T54034 641-651 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T98312 983-985 Chemical denotes S8 http://purl.obolibrary.org/obo/CHEBI_29385
T31806 1295-1300 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T91641 1683-1685 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T83586 1704-1706 Chemical denotes S8 http://purl.obolibrary.org/obo/CHEBI_29385

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T348 147-215 Sentence denotes (A) UMAP of 11,358 single cells from mouse nasal epithelium (n = 4).
T349 216-313 Sentence denotes (B) UMAP projection as in (A), points colored by detection of Ace2 (SARS-CoV-2 receptor homolog).
T350 314-382 Sentence denotes Color coding is as follows: black, RNA positive; blue, RNA negative.
T351 383-486 Sentence denotes (C) Percent of Ace2+ cells by treatment condition (n = 4 arrays per condition; n = 2 arrays per mouse).
T352 487-581 Sentence denotes Black bars indicate Ace2+ cells; white bars indicate Ace2− cells. p = 0.4 by Student’s t test.
T353 582-827 Sentence denotes (D) Heatmap of cell-type-defining genes (Trp63 and Krt17), interferon-induced genes (Irf7, Stat1, Irf9, and Oasl2), and Ace2 among basal epithelial cells, separated by cells derived from saline-treated mice (left) and IFN-α-treated mice (right).
T354 828-914 Sentence denotes Statistical significance by likelihood-ratio test with Bonferroni correction is shown.
T355 915-986 Sentence denotes A full list of differentially expressed genes can be found in Table S8.
T356 987-1159 Sentence denotes (E) Schematic for sampling cells derived from nasal washes of n = 18 human donors with and without current influenza A or B infection for Seq-Well v1 (35,840 single cells).
T357 1160-1183 Sentence denotes See Cao et al., (2020).
T358 1184-1276 Sentence denotes (F and G) ACE2 expression among goblet cells (F) and squamous cells (G) by infection status.
T359 1277-1554 Sentence denotes Shown are Healthy Donor cells from influenza-negative donors (white); Bystander Cells from influenza A (IAV)- or influenza B (IBV)-infected donors, no intracellular viral RNA detected (black); Flu Viral RNA+ Cells with detectable intracellular influenza A or B viral RNA (red).
T360 1555-1666 Sentence denotes Statistical significance by Wilcoxon test with Bonferroni correction, n.s. for Bystander versus Flu Viral RNA+.
T361 1667-1707 Sentence denotes See also Figure S5 and Tables S6 and S8.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1410 62-66 Gene denotes Ace2 Gene:70008
1411 72-76 Gene denotes ACE2 Gene:70008
1412 41-45 Species denotes Mice Tax:10090
1413 121-126 Species denotes Human Tax:9606
1414 127-136 Species denotes Influenza Tax:11520
1415 137-146 Disease denotes Infection MESH:D007239
1417 184-189 Species denotes mouse Tax:10090
1420 278-282 Gene denotes Ace2 Gene:59272
1421 284-294 Species denotes SARS-CoV-2 Tax:2697049
1426 398-402 Gene denotes Ace2 Gene:70008
1427 507-511 Gene denotes Ace2 Gene:70008
1428 540-544 Gene denotes Ace2 Gene:70008
1429 479-484 Species denotes mouse Tax:10090
1441 623-628 Gene denotes Trp63 Gene:22061
1442 633-638 Gene denotes Krt17 Gene:16667
1443 641-651 Gene denotes interferon Gene:3439
1444 667-671 Gene denotes Irf7 Gene:54123
1445 673-678 Gene denotes Stat1 Gene:20846
1446 680-684 Gene denotes Irf9 Gene:16391
1447 690-695 Gene denotes Oasl2 Gene:23962
1448 702-706 Gene denotes Ace2 Gene:70008
1449 800-805 Gene denotes IFN-α Gene:111654
1450 784-788 Species denotes mice Tax:10090
1451 814-818 Species denotes mice Tax:10090
1456 1125-1136 Gene denotes Seq-Well v1
1457 1056-1061 Species denotes human Tax:9606
1458 1094-1103 Species denotes influenza Tax:11520
1459 1111-1120 Disease denotes infection MESH:D007239
1468 1194-1198 Gene denotes ACE2 Gene:59272
1469 1312-1321 Species denotes influenza Tax:11520
1470 1368-1377 Species denotes influenza Tax:11520
1471 1390-1399 Species denotes influenza Tax:11520
1472 1521-1530 Species denotes influenza Tax:11520
1473 1381-1384 Species denotes IAV Tax:11320
1474 1259-1268 Disease denotes infection MESH:D007239
1475 1408-1416 Disease denotes infected MESH:D007239