PMC:7252096 / 20467-20999
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T70996 | 53-68 | Body_part | denotes | epithelial cell | http://purl.org/sig/ont/fma/fma66768 |
| T87517 | 64-68 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T76289 | 128-133 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T28685 | 219-224 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T55403 | 265-269 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T83597 | 307-312 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T11799 | 370-375 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T14134 | 400-411 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T63492 | 466-477 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T25039 | 503-508 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T44586 | 38-43 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T18907 | 53-63 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T89339 | 64-73 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T66912 | 128-133 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T58845 | 219-224 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T54918 | 265-269 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T45497 | 307-312 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T61092 | 322-326 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T69561 | 370-375 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T90995 | 503-508 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T81 | 233-238 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T82 | 528-530 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T119 | 0-4 | Sentence | denotes | (C). |
| T120 | 5-95 | Sentence | denotes | Dot plot of top cluster defining genes for each epithelial cell type and ACE2 and TMPRSS2. |
| T121 | 96-270 | Sentence | denotes | Dot size represents fraction of cells expressing, and color intensity represents average log(normalized UMI + 1) among all cells in each group scaled between 0 and 1 by gene. |
| T122 | 271-424 | Sentence | denotes | ACE2 expression is enriched in club cells (Bimodal test, Bonferroni-corrected p < 0.001), ciliated cells (p < 0.005), and type I pneumocytes (p < 0.001). |
| T123 | 425-532 | Sentence | denotes | TMPRSS2 expression is enriched in type I pneumocytes (p < 0.001) and ciliated cells (p < 0.001) (Table S3). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 570 | 78-82 | Gene | denotes | ACE2 | Gene:59272 |
| 571 | 87-94 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 572 | 271-275 | Gene | denotes | ACE2 | Gene:59272 |
| 573 | 425-432 | Gene | denotes | TMPRSS2 | Gene:7113 |