PMC:7252096 / 10135-21224
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T8170 | 0-4 | Body_part | denotes | Lung | http://purl.org/sig/ont/fma/fma7195 |
| T40688 | 5-20 | Body_part | denotes | Epithelial Cell | http://purl.org/sig/ont/fma/fma66768 |
| T20735 | 16-20 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T61053 | 121-126 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T38580 | 148-155 | Body_part | denotes | tissues | http://purl.org/sig/ont/fma/fma9637 |
| T4254 | 257-261 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T46063 | 376-380 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T8984 | 381-387 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T79059 | 469-471 | Body_part | denotes | v1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
| T85470 | 536-540 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T2796 | 696-712 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T62378 | 707-712 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T64743 | 735-746 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T35128 | 858-863 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T18720 | 908-918 | Body_part | denotes | pneumocyte | http://purl.org/sig/ont/fma/fma62499 |
| T83814 | 990-995 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T23477 | 1006-1022 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T1445 | 1017-1022 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T92758 | 1035-1046 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T97944 | 1115-1126 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T72738 | 1189-1200 | Body_part | denotes | Pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T37841 | 1212-1217 | Body_part | denotes | Lungs | http://purl.org/sig/ont/fma/fma68877 |
| T92961 | 1283-1287 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T78907 | 1288-1294 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T68232 | 1410-1412 | Body_part | denotes | v1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
| T20260 | 1453-1457 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T30494 | 1523-1528 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T63361 | 1548-1552 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T10555 | 1740-1747 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T54627 | 1811-1814 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T41736 | 1831-1834 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T81740 | 1887-1891 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T27177 | 1994-1999 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T15384 | 2036-2040 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T58974 | 2147-2152 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T91751 | 2182-2193 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T93701 | 2331-2342 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T72518 | 2409-2413 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T49230 | 2460-2465 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T85711 | 2532-2543 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T18864 | 2727-2738 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T91953 | 2758-2762 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T71090 | 2818-2823 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T47005 | 2829-2834 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T92870 | 2950-2961 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T63508 | 3485-3493 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T65371 | 3500-3515 | Body_part | denotes | epithelial cell | http://purl.org/sig/ont/fma/fma66768 |
| T37309 | 3511-3515 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T48346 | 3650-3661 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T43690 | 3705-3716 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T22980 | 3776-3787 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T28048 | 3878-3883 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T14664 | 3929-3934 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T51526 | 4062-4066 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T99760 | 4067-4072 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T95342 | 4207-4211 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T92810 | 4212-4218 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T78289 | 4311-4315 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T69943 | 4345-4350 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T4180 | 4543-4554 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T896 | 4568-4573 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T59565 | 4620-4625 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T50359 | 4661-4672 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T31548 | 4720-4728 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T33475 | 4773-4778 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T71780 | 4917-4922 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T13117 | 5067-5071 | Body_part | denotes | Lung | http://purl.org/sig/ont/fma/fma7195 |
| T97209 | 5072-5088 | Body_part | denotes | Epithelial Cells | http://purl.org/sig/ont/fma/fma66768 |
| T58447 | 5083-5088 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T22748 | 5103-5106 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T72849 | 5249-5253 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T51464 | 5254-5260 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T32804 | 5376-5380 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T159 | 5464-5469 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T16248 | 5496-5499 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T57087 | 5543-5548 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T21872 | 5593-5597 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T163 | 5752-5755 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T38697 | 5772-5775 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T165 | 5828-5832 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T42440 | 5918-5923 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T17615 | 5931-5935 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T67803 | 5960-5964 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T7984 | 6071-6076 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T17779 | 6151-6155 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T52492 | 6203-6208 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T94798 | 6288-6299 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T69556 | 6328-6339 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T7255 | 6546-6549 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T87549 | 6713-6718 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T24659 | 6811-6822 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T62679 | 6845-6856 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T40711 | 6951-6956 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T57895 | 7174-7185 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T33276 | 7289-7293 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T1877 | 7294-7310 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T28083 | 7305-7310 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T55595 | 7416-7419 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T52444 | 7504-7507 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T61810 | 7596-7601 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T52569 | 7613-7617 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T86051 | 7642-7645 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T50770 | 7733-7748 | Body_part | denotes | epithelial cell | http://purl.org/sig/ont/fma/fma66768 |
| T30659 | 7744-7748 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T49150 | 7833-7837 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T25558 | 8119-8122 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T6790 | 8326-8329 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T47054 | 8338-8341 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T13368 | 8343-8359 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T50428 | 8354-8359 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T30868 | 8466-8470 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T64579 | 8577-8593 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T18385 | 8588-8593 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T26459 | 8693-8698 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T74490 | 8725-8736 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T57427 | 8754-8765 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T45527 | 8871-8875 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T71902 | 8955-8966 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T62436 | 9078-9089 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T41832 | 9104-9109 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T321 | 9120-9124 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T76609 | 9143-9153 | Body_part | denotes | pneumocyte | http://purl.org/sig/ont/fma/fma62499 |
| T23388 | 9168-9172 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T38118 | 9216-9221 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T76254 | 9329-9334 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T70818 | 9345-9350 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T15181 | 9415-9420 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T16876 | 9627-9631 | Body_part | denotes | Lung | http://purl.org/sig/ont/fma/fma7195 |
| T10381 | 9698-9714 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T43874 | 9709-9714 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T26007 | 9722-9727 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T98068 | 9750-9754 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T99509 | 9761-9767 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T29624 | 9804-9809 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T89353 | 9825-9830 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T39897 | 9856-9861 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T13798 | 9875-9880 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T19523 | 9893-9904 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T40933 | 9922-9933 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T71611 | 9995-10000 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T53856 | 10036-10041 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T6586 | 10045-10051 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T46157 | 10088-10092 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T54100 | 10098-10102 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T47693 | 10118-10123 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T49420 | 10133-10138 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T18542 | 10194-10199 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T45700 | 10211-10216 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T70996 | 10385-10400 | Body_part | denotes | epithelial cell | http://purl.org/sig/ont/fma/fma66768 |
| T87517 | 10396-10400 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T76289 | 10460-10465 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T28685 | 10551-10556 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T55403 | 10597-10601 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T83597 | 10639-10644 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T11799 | 10702-10707 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T14134 | 10732-10743 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T63492 | 10798-10809 | Body_part | denotes | pneumocytes | http://purl.org/sig/ont/fma/fma62499 |
| T25039 | 10835-10840 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T14862 | 10935-10951 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T38033 | 10946-10951 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T7095 | 11059-11064 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T22 | 0-4 | Body_part | denotes | Lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T23 | 376-380 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T24 | 381-387 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T25 | 1283-1287 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T26 | 1288-1294 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T27 | 4062-4066 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T28 | 4207-4211 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T29 | 4212-4218 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T30 | 5067-5071 | Body_part | denotes | Lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T31 | 5249-5253 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T32 | 5254-5260 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T33 | 7289-7293 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T34 | 8466-8470 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T35 | 8871-8875 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T36 | 9627-9631 | Body_part | denotes | Lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T37 | 9761-9767 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T38 | 10045-10051 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T39 | 10088-10092 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T81 | 56-64 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T82 | 56-60 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T83 | 173-181 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T84 | 173-177 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T85 | 636-640 | Disease | denotes | STAR | http://purl.obolibrary.org/obo/MONDO_0010408 |
| T86 | 1567-1571 | Disease | denotes | STAR | http://purl.obolibrary.org/obo/MONDO_0010408 |
| T87 | 2800-2808 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T88 | 2800-2804 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T89 | 3140-3144 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T90 | 3470-3484 | Disease | denotes | adenocarcinoma | http://purl.obolibrary.org/obo/MONDO_0004970 |
| T91 | 4368-4372 | Disease | denotes | STAR | http://purl.obolibrary.org/obo/MONDO_0010408 |
| T92 | 5137-5149 | Disease | denotes | tuberculosis | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T93 | 5493-5495 | Disease | denotes | TB | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T94 | 5508-5510 | Disease | denotes | TB | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T95 | 5608-5612 | Disease | denotes | STAR | http://purl.obolibrary.org/obo/MONDO_0010408 |
| T96 | 6554-6556 | Disease | denotes | TB | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T97 | 6723-6731 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T98 | 6723-6727 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T99 | 7392-7408 | Disease | denotes | immunodeficiency | http://purl.obolibrary.org/obo/MONDO_0021094 |
| T100 | 7441-7460 | Disease | denotes | active tuberculosis | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T101 | 7475-7494 | Disease | denotes | active tuberculosis | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T102 | 7661-7673 | Disease | denotes | tuberculosis | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T103 | 7998-8008 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T104 | 8119-8132 | Disease | denotes | HIV infection | http://purl.obolibrary.org/obo/MONDO_0005109 |
| T105 | 8123-8132 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T106 | 8645-8649 | Disease | denotes | STAR | http://purl.obolibrary.org/obo/MONDO_0010408 |
| T107 | 9553-9565 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T108 | 9605-9617 | Disease | denotes | Tuberculosis | http://purl.obolibrary.org/obo/MONDO_0018076 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T33682 | 0-20 | http://purl.obolibrary.org/obo/CL_0000082 | denotes | Lung Epithelial Cell |
| T96977 | 74-79 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T63395 | 80-88 | http://purl.obolibrary.org/obo/NCBITaxon_9443 | denotes | Primates |
| T74612 | 93-99 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Humans |
| T22651 | 121-126 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T95022 | 134-139 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T6005 | 257-267 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T65779 | 308-309 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T21693 | 360-374 | http://purl.obolibrary.org/obo/NCBITaxon_9544 | denotes | Macaca mulatta |
| T78816 | 376-380 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T69580 | 376-380 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T95293 | 430-437 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
| T91672 | 536-546 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T86810 | 620-621 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T29504 | 632-634 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T74686 | 696-706 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T68973 | 707-712 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T53098 | 858-863 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T93726 | 990-995 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T79600 | 1006-1016 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T66664 | 1017-1032 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells, and type |
| T13219 | 1145-1147 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T22343 | 1212-1217 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lungs |
| T70499 | 1225-1230 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T98814 | 1231-1239 | http://purl.obolibrary.org/obo/NCBITaxon_9443 | denotes | Primates |
| T59631 | 1241-1242 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T79845 | 1283-1287 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T77319 | 1283-1287 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T56107 | 1324-1329 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T41263 | 1330-1338 | http://purl.obolibrary.org/obo/NCBITaxon_9443 | denotes | primates |
| T54356 | 1453-1463 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T37269 | 1523-1528 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T88766 | 1548-1552 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T66647 | 1583-1584 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T40116 | 1646-1647 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T55688 | 1872-1877 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T97901 | 1887-1896 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T45113 | 1904-1906 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T83525 | 1994-1999 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T86594 | 2028-2029 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T79235 | 2036-2040 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T82704 | 2147-2152 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T94942 | 2384-2386 | http://purl.obolibrary.org/obo/CLO_0008935 | denotes | S9 |
| T53007 | 2409-2418 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T17987 | 2460-2465 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T36108 | 2471-2476 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Genes |
| T72036 | 2658-2660 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T94552 | 2678-2680 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T97290 | 2758-2762 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T56304 | 2818-2823 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T7716 | 2829-2834 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T75626 | 2838-2839 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T82354 | 2889-2891 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T556 | 2900-2905 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T57307 | 3031-3032 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T96321 | 3083-3086 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T26550 | 3285-3290 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T1107 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0001601 | denotes | A549 |
| T72877 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0050025 | denotes | A549 |
| T71567 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0054264 | denotes | A549 |
| T57698 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0054265 | denotes | A549 |
| T30638 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0054266 | denotes | A549 |
| T72132 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0054267 | denotes | A549 |
| T28760 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0054268 | denotes | A549 |
| T31074 | 3465-3469 | http://purl.obolibrary.org/obo/CLO_0054269 | denotes | A549 |
| T7152 | 3500-3510 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T19610 | 3511-3520 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T61747 | 3878-3883 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T97969 | 3900-3901 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T33108 | 3929-3934 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T34534 | 3989-3994 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T86334 | 4062-4066 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T50390 | 4062-4066 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T48113 | 4067-4072 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T37100 | 4099-4105 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T5449 | 4119-4120 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T31894 | 4207-4211 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T2015 | 4207-4211 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T45149 | 4311-4321 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T83337 | 4345-4350 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T80628 | 4360-4363 | http://purl.obolibrary.org/obo/CLO_0001236 | denotes | 2 A |
| T55319 | 4401-4406 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T795 | 4461-4463 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T51533 | 4461-4463 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T66909 | 4568-4582 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cells, in line |
| T42173 | 4620-4625 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T35738 | 4641-4643 | http://purl.obolibrary.org/obo/CLO_0001236 | denotes | 2A |
| T95623 | 4773-4778 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T24497 | 4917-4922 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T86794 | 5067-5088 | http://purl.obolibrary.org/obo/CL_0000082 | denotes | Lung Epithelial Cells |
| T51443 | 5159-5164 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T63387 | 5201-5202 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T35956 | 5243-5248 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T32379 | 5249-5253 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T73304 | 5249-5253 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T7811 | 5376-5386 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T89005 | 5436-5437 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37671 | 5464-5469 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T53946 | 5543-5548 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T21733 | 5593-5602 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T96107 | 5624-5625 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T75647 | 5650-5651 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T62279 | 5813-5818 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T23408 | 5828-5837 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T67693 | 5918-5923 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T25827 | 5931-5940 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T4783 | 5952-5953 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T67532 | 5960-5964 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T46104 | 6071-6076 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T20388 | 6099-6108 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes are |
| T2783 | 6127-6129 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T54985 | 6127-6129 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T59240 | 6151-6161 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T38339 | 6203-6208 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T65003 | 6265-6270 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T49895 | 6362-6367 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T27452 | 6373-6374 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T55966 | 6453-6463 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes; the |
| T60530 | 6496-6498 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T6253 | 6496-6498 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T52423 | 6530-6535 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T18839 | 6595-6599 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T75828 | 6617-6619 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T26490 | 6617-6619 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T16241 | 6713-6718 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T78984 | 6772-6777 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T13184 | 6883-6885 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T38372 | 6883-6885 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T59087 | 6951-6956 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T25222 | 6991-6994 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T54419 | 7070-7076 | http://purl.obolibrary.org/obo/CLO_0007900 | denotes | Murphy |
| T55694 | 7247-7248 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T84889 | 7289-7310 | http://purl.obolibrary.org/obo/CL_0000082 | denotes | lung epithelial cells |
| T58859 | 7330-7334 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T31098 | 7386-7391 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T51827 | 7409-7414 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T72175 | 7441-7447 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | active |
| T95140 | 7475-7481 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | active |
| T7363 | 7596-7601 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T32543 | 7613-7623 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T19180 | 7733-7743 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T38954 | 7744-7754 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T89753 | 7789-7793 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T95742 | 7833-7837 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T76826 | 7974-7975 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T15040 | 8058-8059 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T81003 | 8343-8353 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T39323 | 8354-8359 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T32896 | 8374-8375 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T62302 | 8466-8470 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T49811 | 8466-8470 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T83510 | 8503-8522 | http://purl.obolibrary.org/obo/NCBITaxon_9541 | denotes | Macaca fascicularis |
| T95036 | 8577-8587 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T34107 | 8588-8593 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T2157 | 8630-8632 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T63441 | 8693-8698 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T39559 | 8738-8740 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T74853 | 8871-8875 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T2994 | 8871-8875 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T21425 | 8923-8927 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
| T43594 | 9104-9109 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T81133 | 9120-9124 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T47932 | 9168-9178 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
| T61012 | 9216-9221 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T89605 | 9309-9314 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T35819 | 9329-9334 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T41200 | 9345-9350 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T11298 | 9415-9420 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T39187 | 9430-9437 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airways |
| T12030 | 9441-9447 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T67132 | 9517-9518 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T26933 | 9598-9600 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T73657 | 9627-9631 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | Lung |
| T20633 | 9627-9631 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lung |
| T61293 | 9675-9676 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T38285 | 9698-9708 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T57087 | 9709-9714 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T71105 | 9722-9727 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T63382 | 9750-9759 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T17198 | 9804-9809 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T82766 | 9825-9830 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T19623 | 9840-9842 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T37996 | 9856-9861 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T69593 | 9875-9880 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T27809 | 9910-9912 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T85798 | 9981-9982 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T80701 | 9995-10000 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T46135 | 10036-10041 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T9290 | 10088-10092 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T95835 | 10088-10092 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T64574 | 10098-10107 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T34712 | 10118-10123 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T48746 | 10133-10138 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T82967 | 10194-10199 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T84738 | 10211-10216 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T48976 | 10315-10319 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
| T44586 | 10370-10375 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T18907 | 10385-10395 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T89339 | 10396-10405 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T66912 | 10460-10465 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T58845 | 10551-10556 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T54918 | 10597-10601 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T45497 | 10639-10644 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T61092 | 10654-10658 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T69561 | 10702-10707 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T90995 | 10835-10840 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T58071 | 10882-10887 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T53729 | 10935-10945 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T23060 | 10946-10951 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T54660 | 10973-10977 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T48816 | 11059-11064 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T68923 | 11080-11087 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T36 | 732-734 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T37 | 905-907 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T38 | 1112-1114 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T39 | 1186-1188 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T40 | 1740-1747 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T41 | 2179-2181 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T42 | 2328-2330 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T43 | 2529-2531 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T44 | 2724-2726 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T45 | 2947-2949 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T46 | 3051-3053 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T47 | 3130-3133 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T48 | 3539-3542 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T49 | 3549-3552 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T50 | 3647-3649 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T51 | 3702-3704 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T52 | 4007-4010 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T53 | 4243-4245 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T54 | 4461-4463 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T55 | 4540-4542 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T56 | 4658-4660 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T57 | 4709-4719 | Chemical | denotes | surfactant | http://purl.obolibrary.org/obo/CHEBI_35195 |
| T58 | 4720-4728 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T59 | 5172-5174 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
| T60 | 5333-5335 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T61 | 6127-6129 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T62 | 6496-6498 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T63 | 6617-6619 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T64 | 6808-6810 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T65 | 6842-6844 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T66 | 6883-6885 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T67 | 7061-7063 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T68 | 7171-7173 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T69 | 7273-7276 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T70 | 8548-8550 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T71 | 8641-8643 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T72 | 8722-8724 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T73 | 8952-8954 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T74 | 9009-9022 | Chemical | denotes | antimicrobial | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T75 | 9075-9077 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T76 | 9538-9541 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T77 | 9919-9921 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T78 | 9965-9967 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T79 | 9975-9977 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T80 | 10327-10329 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T81 | 10565-10570 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T82 | 10860-10862 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
| T83 | 11041-11043 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T43635 | 8240-8245 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | IKBKB |
| T85557 | 9553-9565 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T57 | 0-99 | Sentence | denotes | Lung Epithelial Cell Expression of Host Factors Used by SARS-CoV-2 in Non-Human Primates and Humans |
| T58 | 100-304 | Sentence | denotes | To investigate which cells within human and NHP tissues represent likely SARS-CoV-2 targets, we analyzed new and existing scRNA-seq datasets to assess which cell types express ACE2, alone or with TMPRSS2. |
| T59 | 305-650 | Sentence | denotes | In a previously unpublished dataset consisting of NHP (Macaca mulatta) lung tissue collected after necropsy of healthy adult animals and analyzed by using Seq-Well v1 (Gierahn et al., 2017), we recovered at least 17 distinct major cell types, including various lymphoid, myeloid, and stromal populations (Figures 1 A–1C; Table S1; STAR Methods). |
| T60 | 651-823 | Sentence | denotes | ACE2 and TMPRSS2 were primarily expressed in epithelial cells, with 6.7% of type II pneumocytes expressing ACE2 and 3.8% co-expressing ACE2 and TMPRSS2 (Figures 1B and 1C). |
| T61 | 824-1149 | Sentence | denotes | Notably, the only double-positive cells observed were classified within the type II pneumocyte population; however, we also identified TMPRSS2 expression within club cells, ciliated epithelial cells, and type I pneumocytes, albeit at diminished abundance and frequency compared with type II pneumocytes (Figure 1C; Table S1). |
| T62 | 1150-1239 | Sentence | denotes | Figure 1 Expression of ACE2 in Type II Pneumocytes in Healthy Lungs of Non-human Primates |
| T63 | 1240-1490 | Sentence | denotes | (A) Schematic of protocol for isolation of lung tissue at necropsy from healthy non-human primates (M. mulatta, n = 3), creation of scRNA-seq libraries by using Seq-Well v1, and computational analysis to identify cell types by using unbiased methods. |
| T64 | 1491-1581 | Sentence | denotes | UMAP projection of 3,793 single cells, points colored by cell identity (see STAR Methods). |
| T65 | 1582-1775 | Sentence | denotes | (B) Uniform manifold approximation and projection (UMAP) as in (A), points colored by detection of ACE2 (coronavirus receptor, top) or TMPRSS2 (coronavirus S protein priming for entry, bottom). |
| T66 | 1776-1844 | Sentence | denotes | Color coding is as follows: black, RNA positive; blue, RNA negative. |
| T67 | 1845-1961 | Sentence | denotes | (C) Dot plot of 2 defining genes for each cell type (Table S1) (Bonferroni-adjusted p < 0.001) and ACE2 and TMPRSS2. |
| T68 | 1962-2153 | Sentence | denotes | Dot size represents fraction of cells within that type expressing a given gene, and color intensity represents binned count-based expression amount (log(scaled UMI+1)) among expressing cells. |
| T69 | 2154-2315 | Sentence | denotes | ACE2 is enriched in type II pneumocytes (6.7% expressing, Bonferroni-adjusted p = 8.62E−33), as is TMPRSS2 (29.5% expressing, Bonferroni-adjusted p = 8.73E−153). |
| T70 | 2316-2388 | Sentence | denotes | Of all type II pneumocytes, 3.8% co-express ACE2 and TMPRSS2 (Table S9). |
| T71 | 2389-2466 | Sentence | denotes | Red arrow indicates cell type with largest proportion of ACE2+TMPRSS2+ cells. |
| T72 | 2467-2662 | Sentence | denotes | (D) Genes differentially expressed among ACE2+ and ACE2− type II pneumocytes. (SCDE package, FDR-adjusted p < 0.05 for IFNGR2, NT5DC1, ARL6IP1, and TRIM27; full results can be found in Table S1). |
| T73 | 2663-2681 | Sentence | denotes | See also Table S1. |
| T74 | 2682-2893 | Sentence | denotes | Next, we compared ACE2 + with ACE2 − type II pneumocytes to explore broader gene programs that differentiate putative SARS-CoV-2 target cells from cells of a similar phenotype and ontogeny (Figure 1D; Table S1). |
| T75 | 2894-3059 | Sentence | denotes | Among genes significantly upregulated in ACE2 + type II pneumocytes, we observed IFNGR2 (false discovery rate [FDR]-adjusted p = 0.022), a receptor for type II IFNs. |
| T76 | 3060-3265 | Sentence | denotes | Notably, previous work has demonstrated limited anti-viral potency of IFN-γ for SARS-associated coronaviruses, compared with that of type I IFNs, at least in vitro (Sainz et al., 2004, Zheng et al., 2004). |
| T77 | 3266-3584 | Sentence | denotes | Other co-regulated genes of potential interest include TRIM27 (FDR-adjusted p = 0.025), as well as NT5DC1 (FDR-adjusted p = 0.003) and ARL6IP1 (FDR-adjusted p = 0.047), which were upregulated in the A549 adenocarcinoma alveolar basal epithelial cell line after exposure to IFN-α and IFN-γ for 6 h (Sanda et al., 2006). |
| T78 | 3585-3850 | Sentence | denotes | We found IFNAR1 consistently expressed among both ACE2 + type II pneumocytes and ACE2 + TMPRSS2 + co-expressing type II pneumocytes, but its level of upregulation compared with all remaining pneumocytes did not meet statistical significance (FDR-adjusted p = 0.11). |
| T79 | 3851-4021 | Sentence | denotes | This analysis finds ACE2 + cells enriched within a rare fraction of secretory cells in NHPs and that ACE2 expression is co-regulated with genes involved in IFN responses. |
| T80 | 4022-4268 | Sentence | denotes | To assess whether the findings from NHP lung cells were similarly present in humans, we analyzed a previously unpublished scRNA-seq dataset derived from surgical resections of fibrotic lung tissue collected with Seq-Well S3 (Hughes et al., 2019). |
| T81 | 4269-4465 | Sentence | denotes | Unsupervised analysis identified multiple cell types and subtypes of immune cells (Figures 2 A–2C; STAR Methods), as defined by the genes displayed in Figure 2C (full lists available in Table S2). |
| T82 | 4466-4649 | Sentence | denotes | Here, we found that ACE2 and TMPRSS2 were primarily expressed within type II pneumocytes and ciliated cells, in line with our analysis of the NHP-derived cells (Figures 1 and 2A, 2B). |
| T83 | 4650-4904 | Sentence | denotes | In type II pneumocytes (identified by unique expression of surfactant proteins SFTPC, SFTPB, and SFTPA1), we found 1.4% of cells expressing ACE2 (FDR-adjusted p = 1.35E−21), 34.2% expressing TMPRSS2 (FDR-adjusted p < 1E−300), and 0.8% co-expressing both. |
| T84 | 4905-5050 | Sentence | denotes | In ciliated cells, we found 7% were ACE2 + (FDR-adjusted p = 5E−64), 24.6% were TMPRSS2 + (FDR-adjusted p = 3.8E−30), and 5.3% co-expressed both. |
| T85 | 5051-5199 | Sentence | denotes | Figure 2 Select Lung Epithelial Cells from Control, HIV-1-Infected, and Mycobacterium-tuberculosis-Infected Human Donors Co-Express ACE2 and TMPRSS2 |
| T86 | 5200-5413 | Sentence | denotes | (A) Schematic of protocol for isolation of human lung tissue from surgical excess, creation of scRNA-seq libraries by using Seq-Well S3, and computational analysis to identify cell types by using unbiased methods. |
| T87 | 5414-5542 | Sentence | denotes | Shown on the right is a UMAP projection of 18,915 cells across 8 donors (n = 3 TB+HIV+; n = 3 TB+; n = 2 non-infected patients). |
| T88 | 5543-5622 | Sentence | denotes | Cells represented by points, colored according to cell type (see STAR Methods). |
| T89 | 5623-5716 | Sentence | denotes | (B) UMAP projection as in (A), points colored by detection of ACE2 (top) or TMPRSS2 (bottom). |
| T90 | 5717-5785 | Sentence | denotes | Color coding is as follows: black, RNA positive; blue, RNA negative. |
| T91 | 5786-6077 | Sentence | denotes | (C) Dot plot of 2 defining genes for each cell type (FDR-adjusted p < 0.001), and ACE2 and TMPRSS2; dot size represents fraction of cells within cell type expressing a given gene, and color intensity represents binned count-based expression amount (log(scaled UMI+1)) among expressing cells. |
| T92 | 6078-6130 | Sentence | denotes | All cluster-defining genes are provided in Table S2. |
| T93 | 6131-6209 | Sentence | denotes | Red arrow indicates cell types with largest proportion of ACE2+TMPRSS2+ cells. |
| T94 | 6210-6340 | Sentence | denotes | (D) Volcano plot identifying significantly upregulated genes in ACE2+TMPRSS2+ pneumocytes compared with all remaining pneumocytes. |
| T95 | 6341-6425 | Sentence | denotes | Red points represent genes with a FDR-adjusted p < 0.05, and log2(fold change) >1.5. |
| T96 | 6426-6499 | Sentence | denotes | Text highlighting specific genes; the full list is available in Table S2. |
| T97 | 6500-6601 | Sentence | denotes | (E) Expression of ACE2 across human donors by HIV and TB status (p = 0.009 by likelihood-ratio test). |
| T98 | 6602-6620 | Sentence | denotes | See also Table S2. |
| T99 | 6621-6887 | Sentence | denotes | As above, to assess for cellular pathways significantly co-expressed within putative target cells for SARS-CoV-2, we computed differentially expressed genes between ACE2 + TMPRSS2 + type II pneumocytes and all other type II pneumocytes (Figures 2C and 2D; Table S2). |
| T100 | 6888-7091 | Sentence | denotes | We found significant enrichment of BATF among ACE2 + TMPRSS2 + cells (FDR-adjusted p = 3.25E−7), which has been demonstrated previously to be upregulated by type I and type II IFNs (Murphy et al., 2013). |
| T101 | 7092-7336 | Sentence | denotes | Of note, we also observed TRIM28 co-expressed with ACE2 and TMPRSS2 among type II pneumocytes in this dataset (FDR-adjusted p = 2.34E−9), which might play a role in potentiating an IFN response in lung epithelial cells (Krischuns et al., 2018). |
| T102 | 7337-7549 | Sentence | denotes | Within this cohort of donors, 3 individuals were human immunodeficiency virus (HIV)+ and diagnosed with active tuberculosis, 3 donors had active tuberculosis and were HIV−, and 2 were negative for both pathogens. |
| T103 | 7550-7818 | Sentence | denotes | Surprisingly, we found that all of the ACE2 + cells across all cell types were derived from HIV+ Mycobacterium tuberculosis (Mtb)+ donors despite approximately equivalent recovery of epithelial cell types from all donors (likelihood-ratio test, p = 0.009) (Figure 2E). |
| T104 | 7819-8361 | Sentence | denotes | Given limited cell and patient numbers combined with potential sampling biases, we caution that this observation requires much broader cohorts to validate a potential role for co-infections; still, we note our observation is suggestive of a role for chronic IFNs in the induction of ACE2, given that HIV infection is associated with persistent upregulation of ISGs, and we observed elevated amounts of IFNAR2, IFI30, and IKBKB (Utay and Douek, 2016) (FDR-adjusted p = 1.1E−6, 8.8E−9, 1.57E−7, respectively; HIV+ versus HIV− epithelial cells). |
| T105 | 8362-8659 | Sentence | denotes | Next, using a previously unpublished scRNA-seq dataset consisting of granuloma and adjacent, uninvolved lung samples from Mtb-infected NHPs (Macaca fascicularis) collected with Seq-Well S3, we identified subsets of epithelial cells expressing ACE2 and TMPRSS2 (Figure S1 ; Table S3; STAR Methods). |
| T106 | 8660-8929 | Sentence | denotes | The majority of ACE2 + TMPRSS2 + cells were, once again, type II pneumocytes (22%) and type I pneumocytes (9.7%) and were largely enriched within granulomatous regions compared with those in adjacent uninvolved lung (Figures S1B and S1C) (p = 0.006, Fisher Exact Test). |
| T107 | 8930-9103 | Sentence | denotes | ACE2 + TMPRSS2 + type II pneumocytes expressed significantly higher amounts of antimicrobial effectors such as LCN2 compared with remaining type II pneumocytes (Figure S1D). |
| T108 | 9104-9373 | Sentence | denotes | Cells with club cell/secretory, type I pneumocyte, and ciliated cell types also contained some ACE2 + TMPRSS2 + cells, but we did not have sufficient power to detect significantly differentially expressed genes between these cells and other cells within those clusters. |
| T109 | 9374-9590 | Sentence | denotes | Altogether, we identify ACE2 + TMPRSS2 + cells in lower airways of humans and NHPs with consistent cellular phenotypes and evidence supporting a potential role for IFN-associated inflammation in upregulation of ACE2. |
| T110 | 9591-9673 | Sentence | denotes | Figure S1 NHP Tuberculosis Infected Lung and Granuloma, Related to Figures 1 and 2 |
| T111 | 9674-9678 | Sentence | denotes | (A). |
| T112 | 9679-9810 | Sentence | denotes | UMAP projection of epithelial cells (1,099 cells) colored by annotated cell type, tissue source, and gating as ACE2+TMPRSS2+ cells. |
| T113 | 9811-9934 | Sentence | denotes | ACE2+TMPRSS2+ cells comprise 11% of ciliated cells, 16% of club cells, 10% type I pneumocytes, and 22% type II pneumocytes. |
| T114 | 9935-9979 | Sentence | denotes | Data generated using Seq-Well S3 (Table S3). |
| T115 | 9980-9984 | Sentence | denotes | (B). |
| T116 | 9985-10108 | Sentence | denotes | Number of cells (left) and % (right) ACE2+TMPRSS2+ cells by tissue source (granuloma versus uninvolved lung) and cell type. |
| T117 | 10109-10264 | Sentence | denotes | Ciliated cells and club cells were omitted from this analysis as we detected too few cells (< 7 total cells) belonging to these clusters in the granulomas. |
| T118 | 10265-10331 | Sentence | denotes | Statistical significance assessed by Fisher Exact Test (Table S3). |
| T119 | 10332-10336 | Sentence | denotes | (C). |
| T120 | 10337-10427 | Sentence | denotes | Dot plot of top cluster defining genes for each epithelial cell type and ACE2 and TMPRSS2. |
| T121 | 10428-10602 | Sentence | denotes | Dot size represents fraction of cells expressing, and color intensity represents average log(normalized UMI + 1) among all cells in each group scaled between 0 and 1 by gene. |
| T122 | 10603-10756 | Sentence | denotes | ACE2 expression is enriched in club cells (Bimodal test, Bonferroni-corrected p < 0.001), ciliated cells (p < 0.005), and type I pneumocytes (p < 0.001). |
| T123 | 10757-10864 | Sentence | denotes | TMPRSS2 expression is enriched in type I pneumocytes (p < 0.001) and ciliated cells (p < 0.001) (Table S3). |
| T124 | 10865-10869 | Sentence | denotes | (D). |
| T125 | 10870-11089 | Sentence | denotes | Dot plot of genes differentially expressed between ACE2+TMPRSS2+ epithelial cells versus rest (Bimodal test, Bonferroni-corrected p < 0.01, log fold change > 0.5). (Table S3, c = number of cells, n = number of animals). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T6 | 7392-7408 | Phenotype | denotes | immunodeficiency | http://purl.obolibrary.org/obo/HP_0002721 |
| T7 | 8431-8440 | Phenotype | denotes | granuloma | http://purl.obolibrary.org/obo/HP_0032252 |
| T8 | 9636-9645 | Phenotype | denotes | Granuloma | http://purl.obolibrary.org/obo/HP_0032252 |
| T9 | 10060-10069 | Phenotype | denotes | granuloma | http://purl.obolibrary.org/obo/HP_0032252 |
| T10 | 10253-10263 | Phenotype | denotes | granulomas | http://purl.obolibrary.org/obo/HP_0032252 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 314 | 56-66 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 315 | 74-79 | Species | denotes | Human | Tax:9606 |
| 318 | 1173-1177 | Gene | denotes | ACE2 | Gene:59272 |
| 319 | 1225-1230 | Species | denotes | human | Tax:9606 |
| 323 | 1567-1571 | Gene | denotes | STAR | Gene:6770 |
| 324 | 1324-1329 | Species | denotes | human | Tax:9606 |
| 325 | 1340-1350 | Species | denotes | M. mulatta | Tax:9544 |
| 330 | 1681-1685 | Gene | denotes | ACE2 | Gene:59272 |
| 331 | 1717-1724 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 332 | 1687-1698 | Species | denotes | coronavirus | Tax:11118 |
| 333 | 1726-1737 | Species | denotes | coronavirus | Tax:11118 |
| 342 | 1944-1948 | Gene | denotes | ACE2 | Gene:59272 |
| 343 | 1953-1960 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 344 | 2154-2158 | Gene | denotes | ACE2 | Gene:59272 |
| 345 | 2253-2260 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 346 | 2360-2364 | Gene | denotes | ACE2 | Gene:59272 |
| 347 | 2369-2376 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 348 | 2446-2450 | Gene | denotes | ACE2 | Gene:59272 |
| 349 | 2451-2458 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 356 | 2508-2512 | Gene | denotes | ACE2 | Gene:59272 |
| 357 | 2518-2522 | Gene | denotes | ACE2 | Gene:59272 |
| 358 | 2586-2592 | Gene | denotes | IFNGR2 | Gene:3460 |
| 359 | 2594-2600 | Gene | denotes | NT5DC1 | Gene:221294 |
| 360 | 2602-2609 | Gene | denotes | ARL6IP1 | Gene:23204 |
| 361 | 2615-2621 | Gene | denotes | TRIM27 | Gene:5987 |
| 374 | 276-280 | Gene | denotes | ACE2 | Gene:59272 |
| 375 | 296-303 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 376 | 651-655 | Gene | denotes | ACE2 | Gene:712790 |
| 377 | 660-667 | Gene | denotes | TMPRSS2 | Gene:715138 |
| 378 | 758-762 | Gene | denotes | ACE2 | Gene:712790 |
| 379 | 786-790 | Gene | denotes | ACE2 | Gene:712790 |
| 380 | 795-802 | Gene | denotes | TMPRSS2 | Gene:715138 |
| 381 | 959-966 | Gene | denotes | TMPRSS2 | Gene:715138 |
| 382 | 636-640 | Gene | denotes | STAR | Gene:699515 |
| 383 | 134-139 | Species | denotes | human | Tax:9606 |
| 384 | 173-183 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 385 | 360-374 | Species | denotes | Macaca mulatta | Tax:9544 |
| 406 | 2700-2704 | Gene | denotes | ACE2 | Gene:59272 |
| 407 | 2712-2716 | Gene | denotes | ACE2 | Gene:59272 |
| 408 | 2935-2939 | Gene | denotes | ACE2 | Gene:59272 |
| 409 | 2975-2981 | Gene | denotes | IFNGR2 | Gene:3460 |
| 410 | 3130-3135 | Gene | denotes | IFN-γ | Gene:3458 |
| 411 | 3321-3327 | Gene | denotes | TRIM27 | Gene:5987 |
| 412 | 3365-3371 | Gene | denotes | NT5DC1 | Gene:221294 |
| 413 | 3401-3408 | Gene | denotes | ARL6IP1 | Gene:23204 |
| 414 | 3539-3544 | Gene | denotes | IFN-α | Gene:3440 |
| 415 | 3594-3600 | Gene | denotes | IFNAR1 | Gene:3454 |
| 416 | 3635-3639 | Gene | denotes | ACE2 | Gene:59272 |
| 417 | 3666-3670 | Gene | denotes | ACE2 | Gene:59272 |
| 418 | 3673-3680 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 419 | 3871-3875 | Gene | denotes | ACE2 | Gene:59272 |
| 420 | 3952-3956 | Gene | denotes | ACE2 | Gene:59272 |
| 421 | 4007-4010 | Gene | denotes | IFN | Gene:3439 |
| 422 | 2800-2810 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 423 | 3156-3169 | Species | denotes | coronaviruses | Tax:11118 |
| 424 | 3470-3493 | Disease | denotes | adenocarcinoma alveolar | MESH:D002282 |
| 425 | 3465-3469 | CellLine | denotes | A549 | CVCL:0023 |
| 430 | 5183-5187 | Gene | denotes | ACE2 | Gene:59272 |
| 431 | 5159-5164 | Species | denotes | Human | Tax:9606 |
| 432 | 5103-5117 | Disease | denotes | HIV-1-Infected | MESH:D015658 |
| 433 | 5123-5158 | Disease | denotes | Mycobacterium-tuberculosis-Infected | MESH:D014376 |
| 439 | 5608-5612 | Gene | denotes | STAR | Gene:6770 |
| 440 | 5243-5248 | Species | denotes | human | Tax:9606 |
| 441 | 5532-5540 | Species | denotes | patients | Tax:9606 |
| 442 | 5496-5499 | Species | denotes | HIV | Tax:12721 |
| 443 | 5523-5531 | Disease | denotes | infected | MESH:D007239 |
| 446 | 5685-5689 | Gene | denotes | ACE2 | Gene:59272 |
| 447 | 5699-5706 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 452 | 5868-5872 | Gene | denotes | ACE2 | Gene:59272 |
| 453 | 5877-5884 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 454 | 6189-6193 | Gene | denotes | ACE2 | Gene:59272 |
| 455 | 6194-6201 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 458 | 6274-6278 | Gene | denotes | ACE2 | Gene:59272 |
| 459 | 6279-6286 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 464 | 6518-6522 | Gene | denotes | ACE2 | Gene:59272 |
| 465 | 6530-6535 | Species | denotes | human | Tax:9606 |
| 466 | 6546-6549 | Species | denotes | HIV | Tax:12721 |
| 467 | 6554-6556 | Chemical | denotes | TB | MESH:D013725 |
| 479 | 4486-4490 | Gene | denotes | ACE2 | Gene:59272 |
| 480 | 4495-4502 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 481 | 4729-4734 | Gene | denotes | SFTPC | Gene:6440 |
| 482 | 4736-4741 | Gene | denotes | SFTPB | Gene:6439 |
| 483 | 4747-4753 | Gene | denotes | SFTPA1 | Gene:653509 |
| 484 | 4790-4794 | Gene | denotes | ACE2 | Gene:59272 |
| 485 | 4841-4848 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 486 | 4941-4945 | Gene | denotes | ACE2 | Gene:59272 |
| 487 | 4985-4992 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 488 | 4368-4372 | Gene | denotes | STAR | Gene:6770 |
| 489 | 4099-4105 | Species | denotes | humans | Tax:9606 |
| 518 | 6786-6790 | Gene | denotes | ACE2 | Gene:59272 |
| 519 | 6793-6800 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 520 | 6923-6927 | Gene | denotes | BATF | Gene:10538 |
| 521 | 6934-6938 | Gene | denotes | ACE2 | Gene:59272 |
| 522 | 6941-6948 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 523 | 7118-7124 | Gene | denotes | TRIM28 | Gene:10155 |
| 524 | 7143-7147 | Gene | denotes | ACE2 | Gene:59272 |
| 525 | 7152-7159 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 526 | 7273-7276 | Gene | denotes | IFN | Gene:3439 |
| 527 | 7589-7593 | Gene | denotes | ACE2 | Gene:59272 |
| 528 | 8102-8106 | Gene | denotes | ACE2 | Gene:59272 |
| 529 | 8221-8227 | Gene | denotes | IFNAR2 | Gene:3455 |
| 530 | 8229-8234 | Gene | denotes | IFI30 | Gene:10437 |
| 531 | 8240-8245 | Gene | denotes | IKBKB | Gene:3551 |
| 532 | 6723-6733 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 533 | 7386-7414 | Species | denotes | human immunodeficiency virus | Tax:12721 |
| 534 | 7647-7673 | Species | denotes | Mycobacterium tuberculosis | Tax:1773 |
| 535 | 7842-7849 | Species | denotes | patient | Tax:9606 |
| 536 | 7416-7419 | Species | denotes | HIV | Tax:12721 |
| 537 | 7504-7507 | Species | denotes | HIV | Tax:12721 |
| 538 | 7642-7645 | Species | denotes | HIV | Tax:12721 |
| 539 | 7675-7678 | Species | denotes | Mtb | Tax:1773 |
| 540 | 8326-8329 | Species | denotes | HIV | Tax:12721 |
| 541 | 8338-8341 | Species | denotes | HIV | Tax:12721 |
| 542 | 7448-7460 | Disease | denotes | tuberculosis | MESH:D014376 |
| 543 | 7482-7494 | Disease | denotes | tuberculosis | MESH:D014376 |
| 544 | 7995-8008 | Disease | denotes | co-infections | MESH:D060085 |
| 545 | 8119-8132 | Disease | denotes | HIV infection | MESH:D015658 |
| 548 | 9601-9631 | Disease | denotes | NHP Tuberculosis Infected Lung | MESH:D012141 |
| 549 | 9636-9645 | Disease | denotes | Granuloma | MESH:D006099 |
| 554 | 9790-9794 | Gene | denotes | ACE2 | Gene:59272 |
| 555 | 9795-9802 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 556 | 9811-9815 | Gene | denotes | ACE2 | Gene:59272 |
| 557 | 9816-9823 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 562 | 10022-10026 | Gene | denotes | ACE2 | Gene:59272 |
| 563 | 10027-10034 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 564 | 10060-10069 | Disease | denotes | granuloma | MESH:D006099 |
| 565 | 10253-10263 | Disease | denotes | granulomas | MESH:D006099 |
| 570 | 10410-10414 | Gene | denotes | ACE2 | Gene:59272 |
| 571 | 10419-10426 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 572 | 10603-10607 | Gene | denotes | ACE2 | Gene:59272 |
| 573 | 10757-10764 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 576 | 10921-10925 | Gene | denotes | ACE2 | Gene:59272 |
| 577 | 10926-10933 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 597 | 8605-8609 | Gene | denotes | ACE2 | Gene:102130864 |
| 598 | 8614-8621 | Gene | denotes | TMPRSS2 | Gene:102137447 |
| 599 | 8676-8680 | Gene | denotes | ACE2 | Gene:102130864 |
| 600 | 8683-8690 | Gene | denotes | TMPRSS2 | Gene:102137447 |
| 601 | 8930-8934 | Gene | denotes | ACE2 | Gene:102130864 |
| 602 | 8937-8944 | Gene | denotes | TMPRSS2 | Gene:102137447 |
| 603 | 9041-9045 | Gene | denotes | LCN2 | Gene:3934 |
| 604 | 9199-9203 | Gene | denotes | ACE2 | Gene:102130864 |
| 605 | 9206-9213 | Gene | denotes | TMPRSS2 | Gene:102137447 |
| 606 | 9398-9402 | Gene | denotes | ACE2 | Gene:59272 |
| 607 | 9405-9412 | Gene | denotes | TMPRSS2 | Gene:7113 |
| 608 | 9538-9541 | Gene | denotes | IFN | Gene:3439 |
| 609 | 9585-9589 | Gene | denotes | ACE2 | Gene:59272 |
| 610 | 8645-8649 | Gene | denotes | STAR | Gene:102132972 |
| 611 | 8503-8522 | Species | denotes | Macaca fascicularis | Tax:9541 |
| 612 | 9441-9447 | Species | denotes | humans | Tax:9606 |
| 613 | 8431-8440 | Disease | denotes | granuloma | MESH:D006099 |
| 614 | 8484-8501 | Disease | denotes | Mtb-infected NHPs | MESH:D007239 |
| 615 | 9553-9565 | Disease | denotes | inflammation | MESH:D007249 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32413319-28192419-20790459 | 489-493 | 28192419 | denotes | 2017 |
| 32413319-15476870-20790460 | 3239-3243 | 15476870 | denotes | 2004 |
| 32413319-15296649-20790461 | 3259-3263 | 15296649 | denotes | 2004 |
| 32413319-16800785-20790462 | 3578-3582 | 16800785 | denotes | 2006 |
| 32413319-23787991-20790463 | 7085-7089 | 23787991 | denotes | 2013 |
| 32413319-30323812-20790464 | 7330-7334 | 30323812 | denotes | 2018 |
| 32413319-27500281-20790465 | 8263-8267 | 27500281 | denotes | 2016 |