PMC:7252096 / 0-799 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7252096","sourcedb":"PMC","sourceid":"7252096","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7252096","text":"SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues\n\nAbstract\nSummary\nThere is pressing urgency to understand the pathogenesis of the severe acute respiratory syndrome coronavirus clade 2 (SARS-CoV-2), which causes the disease COVID-19. SARS-CoV-2 spike (S) protein binds angiotensin-converting enzyme 2 (ACE2), and in concert with host proteases, principally transmembrane serine protease 2 (TMPRSS2), promotes cellular entry. The cell subsets targeted by SARS-CoV-2 in host tissues and the factors that regulate ACE2 expression remain unknown. Here, we leverage human, non-human primate, and mouse single-cell RNA-sequencing (scRNA-seq) datasets across health and disease to uncover putative targets of","divisions":[{"label":"article-title","span":{"begin":0,"end":146}},{"label":"title","span":{"begin":157,"end":164}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T43858","span":{"begin":53,"end":57},"obj":"Body_part"},{"id":"T66568","span":{"begin":74,"end":90},"obj":"Body_part"},{"id":"T43936","span":{"begin":85,"end":90},"obj":"Body_part"},{"id":"T73653","span":{"begin":119,"end":123},"obj":"Body_part"},{"id":"T57281","span":{"begin":139,"end":146},"obj":"Body_part"},{"id":"T26168","span":{"begin":353,"end":360},"obj":"Body_part"},{"id":"T3086","span":{"begin":469,"end":475},"obj":"Body_part"},{"id":"T96149","span":{"begin":527,"end":531},"obj":"Body_part"},{"id":"T2013","span":{"begin":571,"end":578},"obj":"Body_part"},{"id":"T71632","span":{"begin":702,"end":706},"obj":"Body_part"},{"id":"T11","span":{"begin":707,"end":710},"obj":"Body_part"}],"attributes":[{"id":"A22076","pred":"fma_id","subj":"T43858","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A36049","pred":"fma_id","subj":"T66568","obj":"http://purl.org/sig/ont/fma/fma66768"},{"id":"A51246","pred":"fma_id","subj":"T43936","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A42617","pred":"fma_id","subj":"T73653","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A37338","pred":"fma_id","subj":"T57281","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A19641","pred":"fma_id","subj":"T26168","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A5895","pred":"fma_id","subj":"T3086","obj":"http://purl.org/sig/ont/fma/fma82764"},{"id":"A94439","pred":"fma_id","subj":"T96149","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A9231","pred":"fma_id","subj":"T2013","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A41093","pred":"fma_id","subj":"T71632","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A37948","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma67095"},{"subj":"T43858","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T66568","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T43936","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T73653","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T57281","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T26168","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T3086","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T96149","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T2013","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T71632","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T1","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"T2","span":{"begin":0,"end":4},"obj":"Disease"},{"id":"T3","span":{"begin":229,"end":262},"obj":"Disease"},{"id":"T4","span":{"begin":284,"end":292},"obj":"Disease"},{"id":"T5","span":{"begin":284,"end":288},"obj":"Disease"},{"id":"T6","span":{"begin":322,"end":330},"obj":"Disease"},{"id":"T7","span":{"begin":332,"end":340},"obj":"Disease"},{"id":"T8","span":{"begin":332,"end":336},"obj":"Disease"},{"id":"T9","span":{"begin":552,"end":560},"obj":"Disease"},{"id":"T10","span":{"begin":552,"end":556},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T68137","span":{"begin":53,"end":57},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T23666","span":{"begin":61,"end":66},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T35027","span":{"begin":67,"end":73},"obj":"http://purl.obolibrary.org/obo/UBERON_0001005"},{"id":"T49293","span":{"begin":74,"end":84},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T87114","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T85353","span":{"begin":119,"end":123},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T96846","span":{"begin":527,"end":531},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T15043","span":{"begin":659,"end":664},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T37543","span":{"begin":670,"end":675},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T21147","span":{"begin":676,"end":683},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9443"},{"id":"T70638","span":{"begin":689,"end":694},"obj":"http://purl.obolibrary.org/obo/CLO_0007836"},{"id":"T86612","span":{"begin":702,"end":706},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T68137","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23666","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T35027","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T49293","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T87114","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T85353","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T96846","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T15043","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T37543","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21147","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T70638","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T86612","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":353,"end":360},"obj":"Chemical"},{"id":"T2","span":{"begin":367,"end":378},"obj":"Chemical"},{"id":"T3","span":{"begin":469,"end":475},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_48433"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_17822"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T18072","span":{"begin":209,"end":221},"obj":"http://purl.obolibrary.org/obo/GO_0009405"}],"attributes":[{"subj":"T18072","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T1","span":{"begin":0,"end":146},"obj":"Sentence"},{"id":"T2","span":{"begin":148,"end":156},"obj":"Sentence"},{"id":"T3","span":{"begin":157,"end":164},"obj":"Sentence"},{"id":"T4","span":{"begin":165,"end":331},"obj":"Sentence"},{"id":"T5","span":{"begin":332,"end":522},"obj":"Sentence"},{"id":"T6","span":{"begin":523,"end":640},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-sentences"},{"subj":"T2","pred":"source","obj":"LitCovid-sentences"},{"subj":"T3","pred":"source","obj":"LitCovid-sentences"},{"subj":"T4","pred":"source","obj":"LitCovid-sentences"},{"subj":"T5","pred":"source","obj":"LitCovid-sentences"},{"subj":"T6","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"4","span":{"begin":20,"end":24},"obj":"Gene"},{"id":"5","span":{"begin":31,"end":41},"obj":"Gene"},{"id":"6","span":{"begin":0,"end":10},"obj":"Species"},{"id":"7","span":{"begin":61,"end":66},"obj":"Species"},{"id":"35","span":{"begin":343,"end":348},"obj":"Gene"},{"id":"36","span":{"begin":350,"end":360},"obj":"Gene"},{"id":"37","span":{"begin":367,"end":398},"obj":"Gene"},{"id":"38","span":{"begin":400,"end":404},"obj":"Gene"},{"id":"39","span":{"begin":455,"end":486},"obj":"Gene"},{"id":"40","span":{"begin":488,"end":495},"obj":"Gene"},{"id":"41","span":{"begin":609,"end":613},"obj":"Gene"},{"id":"47","span":{"begin":229,"end":274},"obj":"Species"},{"id":"48","span":{"begin":284,"end":294},"obj":"Species"},{"id":"49","span":{"begin":332,"end":342},"obj":"Species"},{"id":"50","span":{"begin":552,"end":562},"obj":"Species"},{"id":"51","span":{"begin":659,"end":664},"obj":"Species"},{"id":"52","span":{"begin":670,"end":675},"obj":"Species"},{"id":"53","span":{"begin":689,"end":694},"obj":"Species"},{"id":"58","span":{"begin":322,"end":330},"obj":"Disease"}],"attributes":[{"id":"A4","pred":"tao:has_database_id","subj":"4","obj":"Gene:59272"},{"id":"A5","pred":"tao:has_database_id","subj":"5","obj":"Gene:3439"},{"id":"A6","pred":"tao:has_database_id","subj":"6","obj":"Tax:2697049"},{"id":"A7","pred":"tao:has_database_id","subj":"7","obj":"Tax:9606"},{"id":"A35","pred":"tao:has_database_id","subj":"35","obj":"Gene:43740568"},{"id":"A36","pred":"tao:has_database_id","subj":"36","obj":"Gene:43740568"},{"id":"A37","pred":"tao:has_database_id","subj":"37","obj":"Gene:59272"},{"id":"A38","pred":"tao:has_database_id","subj":"38","obj":"Gene:59272"},{"id":"A39","pred":"tao:has_database_id","subj":"39","obj":"Gene:7113"},{"id":"A40","pred":"tao:has_database_id","subj":"40","obj":"Gene:7113"},{"id":"A41","pred":"tao:has_database_id","subj":"41","obj":"Gene:59272"},{"id":"A47","pred":"tao:has_database_id","subj":"47","obj":"Tax:694009"},{"id":"A48","pred":"tao:has_database_id","subj":"48","obj":"Tax:2697049"},{"id":"A49","pred":"tao:has_database_id","subj":"49","obj":"Tax:2697049"},{"id":"A50","pred":"tao:has_database_id","subj":"50","obj":"Tax:2697049"},{"id":"A51","pred":"tao:has_database_id","subj":"51","obj":"Tax:9606"},{"id":"A52","pred":"tao:has_database_id","subj":"52","obj":"Tax:9606"},{"id":"A53","pred":"tao:has_database_id","subj":"53","obj":"Tax:10090"},{"id":"A58","pred":"tao:has_database_id","subj":"58","obj":"MESH:C000657245"},{"subj":"4","pred":"source","obj":"LitCovid-PubTator"},{"subj":"5","pred":"source","obj":"LitCovid-PubTator"},{"subj":"6","pred":"source","obj":"LitCovid-PubTator"},{"subj":"7","pred":"source","obj":"LitCovid-PubTator"},{"subj":"35","pred":"source","obj":"LitCovid-PubTator"},{"subj":"36","pred":"source","obj":"LitCovid-PubTator"},{"subj":"37","pred":"source","obj":"LitCovid-PubTator"},{"subj":"38","pred":"source","obj":"LitCovid-PubTator"},{"subj":"39","pred":"source","obj":"LitCovid-PubTator"},{"subj":"40","pred":"source","obj":"LitCovid-PubTator"},{"subj":"41","pred":"source","obj":"LitCovid-PubTator"},{"subj":"47","pred":"source","obj":"LitCovid-PubTator"},{"subj":"48","pred":"source","obj":"LitCovid-PubTator"},{"subj":"49","pred":"source","obj":"LitCovid-PubTator"},{"subj":"50","pred":"source","obj":"LitCovid-PubTator"},{"subj":"51","pred":"source","obj":"LitCovid-PubTator"},{"subj":"52","pred":"source","obj":"LitCovid-PubTator"},{"subj":"53","pred":"source","obj":"LitCovid-PubTator"},{"subj":"58","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93c1","default":true},{"id":"LitCovid-PD-MONDO","color":"#93dbec"},{"id":"LitCovid-PD-CLO","color":"#ece393"},{"id":"LitCovid-PD-CHEBI","color":"#c993ec"},{"id":"LitCovid-PD-GO-BP","color":"#93ecaf"},{"id":"LitCovid-sentences","color":"#ec9593"},{"id":"LitCovid-PubTator","color":"#93abec"}]}]}}