PMC:7247521 / 8512-9254
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 132 | 534-573 | Gene | denotes | Kyoto Encyclopedia of Genes and Genomes | |
| 133 | 344-356 | Species | denotes | Homo sapiens | Tax:9606 |
| 134 | 163-166 | Disease | denotes | XCH | |
| 135 | 687-690 | Disease | denotes | XCH |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T89 | 43-50 | SO:0000417 | denotes | modules |
| T90 | 83-98 | CHEBI:52217;CHEBI:52217 | denotes | pharmacological |
| T91 | 324-331 | NCBITaxon:species | denotes | species |
| T92 | 344-356 | SP_6;NCBITaxon:9606 | denotes | Homo sapiens |
| T93 | 425-432 | SO:0000417 | denotes | modules |
| T94 | 556-561 | SO:0000704 | denotes | Genes |
| T95 | 566-573 | SO:0001026 | denotes | Genomes |
| T96 | 664-671 | SO:0000417 | denotes | modules |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T11 | 243-251 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T12 | 566-573 | Body_part | denotes | Genomes | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 344-356 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Homo sapiens |
| T62 | 386-387 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T63 | 556-561 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Genes |
| T64 | 575-584 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T30 | 21-24 | Chemical | denotes | PPI | http://purl.obolibrary.org/obo/CHEBI_53266|http://purl.obolibrary.org/obo/CHEBI_60614 |
| T32 | 116-119 | Chemical | denotes | PPI | http://purl.obolibrary.org/obo/CHEBI_53266|http://purl.obolibrary.org/obo/CHEBI_60614 |
| T34 | 191-194 | Chemical | denotes | PPI | http://purl.obolibrary.org/obo/CHEBI_53266|http://purl.obolibrary.org/obo/CHEBI_60614 |
| T36 | 243-251 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T37 | 301-304 | Chemical | denotes | PPI | http://purl.obolibrary.org/obo/CHEBI_53266|http://purl.obolibrary.org/obo/CHEBI_60614 |
| T39 | 436-439 | Chemical | denotes | PPI | http://purl.obolibrary.org/obo/CHEBI_53266|http://purl.obolibrary.org/obo/CHEBI_60614 |
| T41 | 715-718 | Chemical | denotes | PPI | http://purl.obolibrary.org/obo/CHEBI_53266|http://purl.obolibrary.org/obo/CHEBI_60614 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T26 | 575-592 | http://purl.obolibrary.org/obo/GO_0007165 | denotes | signaling pathway |
| T27 | 575-584 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T54 | 0-59 | Sentence | denotes | 2.3 Construction of PPI network and MCODE modules analysis |
| T55 | 60-203 | Sentence | denotes | To further explore the pharmacological mechanisms, five PPI networks were built including: MSXG, SGMH, XCH, WLS and Others targets PPI network. |
| T56 | 204-358 | Sentence | denotes | Specifically, the five kinds of target proteins were respectively uploaded to Metascape to build PPI networks, with the species limited to “Homo sapiens”. |
| T57 | 359-518 | Sentence | denotes | Next, MCODE analysis [19], a method for finding densely connected modules in PPI networks, was carried out by Cytoscape 3.2.1 (http://www.cytoscape.org/) [20]. |
| T58 | 519-742 | Sentence | denotes | Finally, KEGG (Kyoto Encyclopedia of Genes and Genomes) signaling pathway enrichment analysis was further conducted on the identified functional modules of MSXG, SGMH, XCH, WLS and Others targets PPI networks, respectively. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32554251-12525261-6393498 | 381-383 | 12525261 | denotes | 19 |
| 32554251-14597658-6393499 | 514-516 | 14597658 | denotes | 20 |