PMC:7247521 / 7007-7790
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 120 | 72-75 | Disease | denotes | XCH | |
| 121 | 199-201 | Disease | denotes | OB | MESH:D009765 |
| 122 | 247-251 | Disease | denotes | CIDs | |
| 123 | 505-509 | Disease | denotes | CIDs |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T84 | 143-147 | CHEBI:23888;CHEBI:23888 | denotes | drug |
| T85 | 259-268 | CHEBI:36357;CHEBI:36357 | denotes | compounds |
| T86 | 453-458 | SO:0001867 | denotes | genes |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T53 | 204-212 | http://purl.obolibrary.org/obo/CLO_0001279 | denotes | 30 % [15 |
| T54 | 453-458 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T55 | 466-472 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | active |
| T56 | 690-693 | http://purl.obolibrary.org/obo/NCBITaxon_9596 | denotes | pan |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T25 | 143-147 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
| T26 | 158-160 | Chemical | denotes | DL | http://purl.obolibrary.org/obo/CHEBI_68596 |
| T27 | 332-335 | Chemical | denotes | TCM | http://purl.obolibrary.org/obo/CHEBI_145500 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T44 | 0-21 | Sentence | denotes | 2.1 Data preparation |
| T45 | 22-214 | Sentence | denotes | Compounds of the main herb in formula MSXG, SGMH, XCH, WLS and Others were searched in TCMSP [13], and screened based on drug-likeness (DL) ≥0.18 [14] and oral bioavailability (OB) ≥30 % [15]. |
| T46 | 215-315 | Sentence | denotes | Then, the corresponding Pubchem CIDs of the compounds were retrieved from the Pubchem database [16]. |
| T47 | 316-511 | Sentence | denotes | Finally, BATMAN-TCM [17], an bioinformatics analysis tool for studying TCM’s molecular mechanisms, was used to identify potential target genes of the active components (uploaded by Pubchem CIDs). |
| T48 | 512-592 | Sentence | denotes | To make the results more credible, we set the cutoff score ≥ 30 as the standard. |
| T49 | 593-783 | Sentence | denotes | Finally, to discovery the co-differentially presented targets in the five formulae, we conducted pan-formula analysis using Venn diagrams (http://bioinformatics.psb.ugent.be/webtools/Venn/). |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32554251-24735618-6393492 | 116-118 | 24735618 | denotes | 13 |
| 32554251-17033281-6393493 | 169-171 | 17033281 | denotes | 14 |
| 32554251-22837674-6393494 | 210-212 | 22837674 | denotes | 15 |
| 32554251-26400175-6393495 | 311-313 | 26400175 | denotes | 16 |
| 32554251-26879404-6393496 | 337-339 | 26879404 | denotes | 17 |