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PMC:7247521 / 37375-39448 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
626 600-608 Disease denotes COVID-19 MESH:C000657245
627 850-853 Disease denotes XCH
633 1278-1312 Gene denotes MXO1 SO1 SX1 WO1 XO1 Main Protease
634 1420-1424 Gene denotes RdRp Gene:43740578
635 1475-1479 Gene denotes RdRp Gene:43740578
636 1535-1543 Gene denotes Helicase Gene:164045
637 1598-1606 Gene denotes Helicase Gene:164045
639 1231-1240 Species denotes 2019-nCov Tax:2697049
641 2058-2061 Disease denotes XCH
645 109-117 Disease denotes COVID-19 MESH:C000657245
646 194-197 Disease denotes XCH
647 228-236 Disease denotes COVID-19 MESH:C000657245

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T569 109-117 SP_7 denotes COVID-19
T570 228-236 SP_7 denotes COVID-19
T578 600-608 SP_7 denotes COVID-19
T579 644-648 CHEBI:23888;CHEBI:23888 denotes drug
T580 771-775 CHEBI:23888;CHEBI:23888 denotes drug
T581 1231-1240 SP_7 denotes 2019-nCov

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T147 1241-1249 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T148 1430-1433 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T149 1488-1491 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T150 1667-1671 Body_part denotes ExoN http://purl.org/sig/ont/fma/fma84120
T151 1911-1918 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T152 1971-1978 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T69 109-117 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 228-236 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T71 600-608 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T325 167-169 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T326 531-533 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T327 678-679 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T328 718-722 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T329 1260-1263 http://purl.obolibrary.org/obo/CLO_0007875 denotes MS1
T330 1260-1263 http://purl.obolibrary.org/obo/CLO_0052410 denotes MS1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T322 644-648 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T323 771-775 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T324 1241-1249 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T325 1544-1547 Chemical denotes ADP http://purl.obolibrary.org/obo/CHEBI_16761|http://purl.obolibrary.org/obo/CHEBI_456216|http://purl.obolibrary.org/obo/CHEBI_73342
T328 1911-1918 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T329 1971-1978 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T330 1979-1982 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T103 1979-1990 http://purl.obolibrary.org/obo/GO_0022831 denotes ion channel

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T276 0-134 Sentence denotes Firstly, the robustness of whole networks against formula attack was assessed to evaluate QFPD attack on the COVID-19 disease network.
T277 135-413 Sentence denotes Interestingly, Table 4 and Fig. 11 showed that MSXG, SGMH, XCH, WLS and Others attack on the COVID-19 network were characterized by greater disturbance score than negative control (BXTM), and increasing dependence on hub nodes, indicating greater fragility under formula attack.
T278 414-525 Sentence denotes In addition, SGMH, MSXG, and Others exerted higher disturbance score than the positive control (YDBF) Table 5 .
T279 526-617 Sentence denotes Fig. 11 Evaluation of the effect of QFPD on the robustness disturbance of COVID-19 network.
T280 618-723 Sentence denotes Blue normal distribution: drug attack on random networks as a null distribution for the permutation test.
T281 724-804 Sentence denotes Red vertical line: the disturbance rate of the drug to the real disease network.
T282 805-882 Sentence denotes Fist row: MXSG, second row: SGMH, third row: XCH, fourth row: WLS, fifth row:
T283 883-890 Sentence denotes Others.
T284 891-1169 Sentence denotes Fist column: average connectivity, second row: average length of shortest path, third row: connection centrality, fourth row: closeness centrality. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)
T285 1170-1250 Sentence denotes Table 5 Docking score between common ingredients of QFPD and 2019-nCov proteins.
T286 1251-1298 Sentence denotes Molecule MS1 MX16 MX17 MX8 MXO1 SO1 SX1 WO1 XO1
T287 1299-1355 Sentence denotes Main Protease −7.6 −7 −7.8 −7.8 −7.8 −7.2 −7.1 −7.4 −7.4
T288 1356-1419 Sentence denotes Papain-like protease −8 −8.2 −8.1 −8.1 −8.2 −8.2 −9.2 −8.7 −8.3
T289 1420-1474 Sentence denotes RdRp with RNA −8.6 −8 −7.9 −7.9 −8 −8.4 −8.2 −8.8 −9.5
T290 1475-1534 Sentence denotes RdRp without RNA −7.1 −6.8 −6.8 −6.8 −7 −7.1 −6.9 −7.5 −7.1
T291 1535-1597 Sentence denotes Helicase ADP site −6.2 −6.5 −6.3 −6.1 −6.2 −6.4 −6.8 −6.2 −6.8
T292 1598-1660 Sentence denotes Helicase NCB site −7.4 −7.1 −7.2 −7.2 −7.5 −7.5 −7.4 −7.6 −7.5
T293 1661-1715 Sentence denotes Nsp14(ExoN) −7.2 −6.6 −6.6 −6.7 −6.9 −7 −6.9 −7.1 −7.1
T294 1716-1776 Sentence denotes Nsp14(N7-MTase) −8.6 −8.3 −8.4 −8.3 −8.6 −8.3 −9.4 −8.7 −8.7
T295 1777-1845 Sentence denotes Nsp15(endoribonuclease) −6.2 −6.8 −6.4 −6.4 −6.3 −6.5 −6.8 −6.4 −6.6
T296 1846-1908 Sentence denotes Nsp16(2′-O-MTase) −8.1 −7.4 −7.6 −7.8 −7.8 −8.3 −7.7 −8.4 −8.2
T297 1909-1968 Sentence denotes N protein NCB site −8.1 −7.9 −8 −8 −7.6 −7.8 −7.5 −7.7 −7.9
T298 1969-2036 Sentence denotes E protein(ion channel) −6.4 −6.9 −7.2 −7.2 −6.9 −6.9 −7.9 −6.8 −6.8
T299 2037-2065 Sentence denotes M: MXSG, S: SGMH, X: XCH, O:
T300 2066-2073 Sentence denotes Others.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T8 1291-1294 GlycoEpitope denotes WO1 http://www.glycoepitope.jp/epitopes/AN0690