> top > docs > PMC:7247521 > spans > 32968-35288 > annotations

PMC:7247521 / 32968-35288 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
512 2173-2177 Gene denotes RdRp Gene:43740578
513 2210-2214 Gene denotes RdRp Gene:43740578
514 1945-1953 Disease denotes COVID-19 MESH:C000657245
515 2258-2261 Disease denotes XCH
516 2276-2279 Disease denotes XCH
517 2305-2308 Disease denotes XCH
537 1385-1389 Gene denotes RdRp Gene:43740578
538 1665-1669 Gene denotes RdRp Gene:43740578
539 640-643 Chemical denotes PRO MESH:D011392
540 649-652 Chemical denotes VAL MESH:D014633
541 658-661 Chemical denotes LYS MESH:D008239
542 670-673 Chemical denotes SER MESH:D012694
543 846-849 Chemical denotes PHE MESH:D010649
544 1015-1018 Chemical denotes LYS MESH:D008239
545 1024-1027 Chemical denotes LYS MESH:D008239
546 1033-1036 Chemical denotes VAL MESH:D014633
547 1045-1048 Chemical denotes PRO MESH:D011392
548 1720-1728 Chemical denotes hydrogen MESH:D006859
549 1790-1793 Chemical denotes CYS MESH:D003545
550 1799-1802 Chemical denotes GLY
551 1808-1811 Chemical denotes LYS MESH:D008239
552 1820-1823 Chemical denotes ASP MESH:D001224
553 502-505 Disease denotes XCH
554 731-734 Disease denotes XCH
555 1613-1616 Disease denotes XCH

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T412 18-26 CHEBI:36357;CHEBI:36357 denotes compound
T413 86-95 PG_4 denotes N protein
T414 324-329 PR:000000125 denotes nsp14
T415 472-480 CHEBI:36357;CHEBI:36357 denotes compound
T416 538-543 PR:000000125 denotes nsp15
T417 684-687 PR:P19339 denotes SX1
T418 701-709 CHEBI:36357;CHEBI:36357 denotes compound
T419 765-770 PR:000000125 denotes nsp14
T420 869-872 PR:P19339 denotes SX1
T421 913-918 PR:000000125 denotes nsp15
T422 1071-1079 CHEBI:36357;CHEBI:36357 denotes compound
T423 1139-1144 PR:000000125 denotes nsp16
T424 1230-1235 CHEBI:17478;CHEBI:17478 denotes alkyl
T425 1243-1248 CHEBI:22563;CHEBI:22563 denotes anion
T426 1378-1383 PR:000000125 denotes nsp12
T427 1484-1490 CHEBI:36916;CHEBI:36916 denotes cation
T428 1498-1503 CHEBI:22563;CHEBI:22563 denotes anion
T429 1592-1600 CHEBI:36357;CHEBI:36357 denotes compound
T430 1658-1663 PR:000000125 denotes nsp12
T431 1909-1918 CHEBI:36357;CHEBI:36357 denotes compounds
T432 1945-1953 SP_7 denotes COVID-19
T433 1975-1984 PG_4 denotes N protein
T434 1998-2001 PR:Q8K4K7 denotes MS1
T435 2006-2011 PR:000000125 denotes nsp14
T436 2032-2037 PR:000000125 denotes nsp15
T437 2061-2064 PR:P19339 denotes SX1
T438 2069-2074 PR:000000125 denotes nsp14
T439 2090-2093 PR:P19339 denotes SX1
T440 2098-2103 PR:000000125 denotes nsp15
T441 2135-2140 PR:000000125 denotes nsp16
T442 2166-2171 PR:000000125 denotes nsp12
T443 2203-2208 PR:000000125 denotes nsp12

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T108 88-95 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T109 331-335 Body_part denotes ExoN http://purl.org/sig/ont/fma/fma84120
T110 1398-1401 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T111 1675-1678 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T112 1954-1962 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T113 1977-1984 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T114 2013-2017 Body_part denotes ExoN http://purl.org/sig/ont/fma/fma84120
T115 2186-2189 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T116 2220-2223 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T62 1945-1953 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T262 0-3 http://purl.obolibrary.org/obo/CLO_0007875 denotes MS1
T263 0-3 http://purl.obolibrary.org/obo/CLO_0052410 denotes MS1
T264 12-13 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T265 16-17 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T266 280-283 http://purl.obolibrary.org/obo/CLO_0007875 denotes MS1
T267 280-283 http://purl.obolibrary.org/obo/CLO_0052410 denotes MS1
T268 441-444 http://purl.obolibrary.org/obo/CLO_0037067 denotes VAL
T269 470-471 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T270 649-652 http://purl.obolibrary.org/obo/CLO_0037067 denotes VAL
T271 674-677 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T272 674-677 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T273 674-677 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T274 674-677 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T275 674-677 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T276 674-677 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T277 674-677 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T278 699-700 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T279 1033-1036 http://purl.obolibrary.org/obo/CLO_0037067 denotes VAL
T280 1069-1070 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T281 1535-1538 http://purl.obolibrary.org/obo/CLO_0001417 denotes 556
T282 1590-1591 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T283 1636-1639 http://purl.obolibrary.org/obo/CLO_0050884 denotes ten
T284 1794-1797 http://purl.obolibrary.org/obo/CLO_0001001 denotes 813
T285 1964-1965 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T286 1967-1970 http://purl.obolibrary.org/obo/CLO_0007875 denotes MS1
T287 1967-1970 http://purl.obolibrary.org/obo/CLO_0052410 denotes MS1
T288 1995-1996 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T289 1998-2001 http://purl.obolibrary.org/obo/CLO_0007875 denotes MS1
T290 1998-2001 http://purl.obolibrary.org/obo/CLO_0052410 denotes MS1
T291 2226-2228 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T261 88-95 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T262 136-138 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T263 139-144 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T265 145-153 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T266 160-162 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T267 170-172 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T268 173-175 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T269 188-190 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T270 241-244 Chemical denotes ALA http://purl.obolibrary.org/obo/CHEBI_16449|http://purl.obolibrary.org/obo/CHEBI_27432
T272 371-373 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T273 374-376 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T274 420-423 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T275 604-606 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T276 658-661 Chemical denotes LYS http://purl.obolibrary.org/obo/CHEBI_25094
T277 792-794 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T278 795-797 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T279 810-812 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T280 846-849 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T281 979-981 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T282 1015-1018 Chemical denotes LYS http://purl.obolibrary.org/obo/CHEBI_25094
T283 1024-1027 Chemical denotes LYS http://purl.obolibrary.org/obo/CHEBI_25094
T284 1064-1066 Chemical denotes 9F http://purl.obolibrary.org/obo/CHEBI_24061
T285 1189-1195 Chemical denotes Carbon http://purl.obolibrary.org/obo/CHEBI_27594
T286 1196-1204 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T287 1211-1213 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T288 1214-1216 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T289 1227-1229 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T290 1240-1242 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T291 1243-1248 Chemical denotes anion http://purl.obolibrary.org/obo/CHEBI_22563
T292 1276-1279 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T293 1434-1440 Chemical denotes Carbon http://purl.obolibrary.org/obo/CHEBI_27594
T294 1441-1449 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T295 1468-1473 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T297 1474-1479 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T299 1481-1483 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T300 1484-1490 Chemical denotes cation http://purl.obolibrary.org/obo/CHEBI_36916
T301 1495-1497 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T302 1498-1503 Chemical denotes anion http://purl.obolibrary.org/obo/CHEBI_22563
T303 1711-1713 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T304 1714-1719 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T306 1720-1728 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T307 1735-1737 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T308 1738-1740 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T309 1754-1756 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T310 1808-1811 Chemical denotes LYS http://purl.obolibrary.org/obo/CHEBI_25094
T311 1954-1962 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T312 1977-1984 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T313 2226-2228 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T251 0-453 Sentence denotes MS1 (Fig. 9 A), a compound in formulae MXSG and SGMH, showed eleven interactions with N protein NCB site including H-bond interactions, Pi-Donor hydrogen bond, Pi-sigma, Pi-Pi stacked and Pi-alkyl, which were connected with SER 51, THR 109, ALA 50 and PRO 42, etc.; additionally, MS1 (Fig. 9B) showed five interactions with nsp14 [ExoN] including H-bond interactions and Pi-Pi stacked, which were connected with GLU 92, PHE 190, ASP 273 and VAL 91, etc.
T252 454-683 Sentence denotes MX16 (Fig. 9C), a compound in formulae MXSG and XCH, showed seven interactions with nsp15 [endoribonuclease] including H-bond interactions, Alkyl and Pi-alkyl, which were connected with PRO 343, VAL 275, LYS 344 and SER 293, etc.
T253 684-1053 Sentence denotes SX1 (Fig. 9D), a compound in formulae SGMH and XCH, showed two interactions with nsp14 [N7-MTase] including Pi-Pi stacked and Pi-alkyl, which were connected with PHE 426; additionally, SX1 (Fig. 9E) showed five interactions with nsp15 [endoribonuclease] including H-bond interactions, Alkyl and Pi-alkyl, which were connected with LYS 344, LYS 289, VAL 291 and PRO 343.
T254 1054-1574 Sentence denotes WO1 (Fig. 9F), a compound in formulae WLS and Others, showed seven interactions with nsp16 [2′-O-MTase] including H-bond interactions, Carbon hydrogen bond, Pi-Pi T-shaped, Pi-alkyl and Pi-anion, which were connected with PHE 149, CYS 115, ASP 99 and SER 74, etc.; additionally, WO1 (Fig. 9G) showed seven interactions with nsp12 [RdRp without RNA] including H-bond interactions, Carbon hydrogen bond, Unfavorable Donor-Donor, Pi-cation and Pi-anion, which were connected with THR 556, ARG 553, ASP 623 and SER 682, etc.
T255 1575-1833 Sentence denotes XO1 (Fig. 9H), a compound in formulae XCH and Others, showed ten interactions with nsp12 [RdRp with RNA] including H-bond interactions, Pi-Donor hydrogen bond, Pi-Pi T-shaped and Pi-alkyl, which were connected with CYS 813, GLY 590, LYS 593 and ASP 865, etc.
T256 1834-1963 Sentence denotes Fig. 9 Schematic (3D and 2D) representation that molecular model of common compounds of the five formulae with COVID-19 proteins.
T257 1964-2225 Sentence denotes A: MS1 and N protein NCB site, B: MS1 and nsp14 [ExoN], C: MX16 and nsp15 [endoribonuclease], D: SX1 and nsp14 [N7-MTase], E: SX1 and nsp15 [endoribonuclease], F: WO1 and nsp16 [2′-O-MTase], G: WO1 and nsp12 [RdRp without RNA], H: XO1 and nsp12 [RdRp with RNA].
T258 2226-2320 Sentence denotes MS: MXSG and SGMH, MX: MXSG and XCH, SX: SGMH and XCH, WO: WLS and Others, XO: XCH and Others.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T4 1054-1057 GlycoEpitope denotes WO1 http://www.glycoepitope.jp/epitopes/AN0690
T5 1333-1336 GlycoEpitope denotes WO1 http://www.glycoepitope.jp/epitopes/AN0690
T6 2127-2130 GlycoEpitope denotes WO1 http://www.glycoepitope.jp/epitopes/AN0690
T7 2158-2161 GlycoEpitope denotes WO1 http://www.glycoepitope.jp/epitopes/AN0690