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PMC:7247521 / 31632-32967 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
480 278-286 Gene denotes Helicase Gene:164045
481 947-951 Gene denotes Mpro Gene:8673700
482 1175-1179 Gene denotes Mpro Gene:8673700
483 730-735 Gene denotes PLpro Gene:43740578
484 506-514 Gene denotes Helicase Gene:164045
485 173-176 Chemical denotes TYR MESH:D014443
486 181-184 Chemical denotes ALA MESH:D000409
487 189-192 Chemical denotes ILE MESH:D007532
488 200-203 Chemical denotes PRO MESH:D011392
489 378-381 Chemical denotes ASN MESH:D001216
490 387-390 Chemical denotes ARG MESH:D001120
491 396-399 Chemical denotes LEU MESH:D007930
492 407-410 Chemical denotes PRO MESH:D011392
493 992-1000 Chemical denotes hydrogen MESH:D006859
494 1055-1058 Chemical denotes GLU MESH:D018698
495 1064-1067 Chemical denotes LEU MESH:D007930
496 1076-1079 Chemical denotes CYS MESH:D003545
497 1090-1092 Chemical denotes O2 MESH:D010100
498 1211-1217 Chemical denotes Carbon MESH:D002244
499 1218-1226 Chemical denotes hydrogen MESH:D006859
500 1236-1241 Chemical denotes anion MESH:D000838
501 1246-1252 Chemical denotes sulfur MESH:D013455
502 1302-1305 Chemical denotes GLY
503 1310-1313 Chemical denotes LEU MESH:D007930
504 1322-1325 Chemical denotes CYS MESH:D003545
505 911-914 Disease denotes XCH

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T401 25-33 CHEBI:36357;CHEBI:36357 denotes compound
T402 83-92 PG_2 denotes E protein
T403 94-97 CHEBI:24870;CHEBI:24870 denotes ion
T404 441-449 CHEBI:36357;CHEBI:36357 denotes compound
T405 499-504 PR:000000125 denotes nsp13
T406 571-576 CHEBI:32988;CHEBI:32988 denotes Amide
T407 749-754 CHEBI:22563;CHEBI:22563 denotes anion
T408 890-898 CHEBI:36357;CHEBI:36357 denotes compound
T409 1090-1092 CHEBI:15379;CHEBI:15379 denotes O2
T410 1115-1123 CHEBI:36357;CHEBI:36357 denotes compound
T411 1236-1241 CHEBI:22563;CHEBI:22563 denotes anion

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T107 85-92 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T255 14-15 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T256 416-418 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T257 430-431 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T258 687-689 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T259 879-880 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T260 1104-1105 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T261 1306-1308 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T217 0-2 Chemical denotes M3 http://purl.obolibrary.org/obo/CHEBI_51083|http://purl.obolibrary.org/obo/CHEBI_53453
T219 85-92 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T220 94-97 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T221 117-119 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T222 127-129 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T223 181-184 Chemical denotes ALA http://purl.obolibrary.org/obo/CHEBI_16449|http://purl.obolibrary.org/obo/CHEBI_27432
T225 228-230 Chemical denotes M3 http://purl.obolibrary.org/obo/CHEBI_51083|http://purl.obolibrary.org/obo/CHEBI_53453
T227 319-324 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T229 325-330 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T231 332-334 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T232 378-381 Chemical denotes ASN http://purl.obolibrary.org/obo/CHEBI_22653
T233 515-518 Chemical denotes ADP http://purl.obolibrary.org/obo/CHEBI_16761|http://purl.obolibrary.org/obo/CHEBI_456216|http://purl.obolibrary.org/obo/CHEBI_73342
T236 571-576 Chemical denotes Amide http://purl.obolibrary.org/obo/CHEBI_32988
T237 577-579 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T238 592-594 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T239 628-631 Chemical denotes ALA http://purl.obolibrary.org/obo/CHEBI_16449|http://purl.obolibrary.org/obo/CHEBI_27432
T241 746-748 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T242 749-754 Chemical denotes anion http://purl.obolibrary.org/obo/CHEBI_22563
T243 756-758 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T244 759-761 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T245 771-773 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T246 774-776 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T247 790-792 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T248 983-985 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T249 986-991 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T251 992-1000 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T252 1010-1012 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T253 1090-1092 Chemical denotes O2 http://purl.obolibrary.org/obo/CHEBI_15379
T254 1211-1217 Chemical denotes Carbon http://purl.obolibrary.org/obo/CHEBI_27594
T255 1218-1226 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T256 1233-1235 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T257 1236-1241 Chemical denotes anion http://purl.obolibrary.org/obo/CHEBI_22563
T258 1243-1245 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780
T259 1246-1252 Chemical denotes sulfur http://purl.obolibrary.org/obo/CHEBI_26833
T260 1257-1259 Chemical denotes Pi http://purl.obolibrary.org/obo/CHEBI_35780

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T102 94-105 http://purl.obolibrary.org/obo/GO_0022831 denotes ion channel

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T247 0-415 Sentence denotes M3 (Fig. 8A), a specific compound in formulae MXSG, showed eight interactions with E protein [ion channel] including Pi-sigma, Pi-alkyl and Alkyl, which were connected with TYR 57, ALA 32, ILE 46 and PRO 54, etc.; additionally, M3 (Fig. 8B) showed five interactions with nsp13 [Helicase NCB site] including Unfavorable Donor-Donor, Pi-alkyl and Alkyl, which were connected with ASN 559, ARG 409, LEU 42 and PRO 406.
T248 416-864 Sentence denotes S1 (Fig. 8C), a specific compound in formulae SGMH, showed seven interactions with nsp13 [Helicase ADP site] including H-bond interactions, van der waals, Amide-Pi stacked and Pi-alkyl, which were connected with ALA 313, ASP 374, GLN 537 and SER 289, etc.; additionally, S1 (Fig. 8D) showed five interactions with PLpro including Pi-anion, Pi-Pi stacked, Pi-Pi T-shaped and Pi-alkyl, which were connected with TYR 264, ASP 164, TYR 268 and PRO 248.
T249 865-1089 Sentence denotes X2 (Fig. 8E), a specific compound in formulae XCH, showed seven interactions with Mpro including H-bond interactions, Pi-Donor hydrogen bond and Pi-alkyl, which were connected with MET 165, GLU 166, LEU 141 and CYS 145, etc.
T250 1090-1335 Sentence denotes O2 (Fig. 8F), a specific compound in formulae Others, showed seven interactions with Mpro including H-bond interactions, Carbon hydrogen bond, Pi-anion, Pi-sulfur and Pi-alkyl, which were connected with MET 131, GLY 71, LEU 100 and CYS 115, etc.