PMC:7245302 / 33487-34146 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T174","span":{"begin":356,"end":364},"obj":"Body_part"}],"attributes":[{"id":"A174","pred":"fma_id","subj":"T174","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"A. The tertiary structure of the designed MEPVC. The red, green, purple, and yellow colors represent AAY linkers, epitopes, adjuvant, and EAAK linkers, respectively. B. The z-score plot indicating the overall good quality of the MEPVC. The z-score of the input MEPVC is shown by a black dot, validating the score within the range revealed for similar size proteins. C. Ramachandran plot for the MEPVC illustrating distribution of torsion angles (blue squares) comparative to the core (shown in red) and allowed (shown in brown) regions. Residues in the generously allowed region are shown in dark yellow whereas disallowed regions are depicted in pale yellow."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T245","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T246","span":{"begin":166,"end":167},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T247","span":{"begin":279,"end":280},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"A. The tertiary structure of the designed MEPVC. The red, green, purple, and yellow colors represent AAY linkers, epitopes, adjuvant, and EAAK linkers, respectively. B. The z-score plot indicating the overall good quality of the MEPVC. The z-score of the input MEPVC is shown by a black dot, validating the score within the range revealed for similar size proteins. C. Ramachandran plot for the MEPVC illustrating distribution of torsion angles (blue squares) comparative to the core (shown in red) and allowed (shown in brown) regions. Residues in the generously allowed region are shown in dark yellow whereas disallowed regions are depicted in pale yellow."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T208","span":{"begin":124,"end":132},"obj":"Chemical"},{"id":"T209","span":{"begin":356,"end":364},"obj":"Chemical"}],"attributes":[{"id":"A208","pred":"chebi_id","subj":"T208","obj":"http://purl.obolibrary.org/obo/CHEBI_60809"},{"id":"A209","pred":"chebi_id","subj":"T209","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"A. The tertiary structure of the designed MEPVC. The red, green, purple, and yellow colors represent AAY linkers, epitopes, adjuvant, and EAAK linkers, respectively. B. The z-score plot indicating the overall good quality of the MEPVC. The z-score of the input MEPVC is shown by a black dot, validating the score within the range revealed for similar size proteins. C. Ramachandran plot for the MEPVC illustrating distribution of torsion angles (blue squares) comparative to the core (shown in red) and allowed (shown in brown) regions. Residues in the generously allowed region are shown in dark yellow whereas disallowed regions are depicted in pale yellow."}

{"project":"LitCovid-sentences","denotations":[{"id":"T246","span":{"begin":3,"end":48},"obj":"Sentence"},{"id":"T247","span":{"begin":49,"end":165},"obj":"Sentence"},{"id":"T248","span":{"begin":166,"end":168},"obj":"Sentence"},{"id":"T249","span":{"begin":169,"end":235},"obj":"Sentence"},{"id":"T250","span":{"begin":236,"end":365},"obj":"Sentence"},{"id":"T251","span":{"begin":366,"end":368},"obj":"Sentence"},{"id":"T252","span":{"begin":369,"end":536},"obj":"Sentence"},{"id":"T253","span":{"begin":537,"end":659},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A. The tertiary structure of the designed MEPVC. The red, green, purple, and yellow colors represent AAY linkers, epitopes, adjuvant, and EAAK linkers, respectively. B. The z-score plot indicating the overall good quality of the MEPVC. The z-score of the input MEPVC is shown by a black dot, validating the score within the range revealed for similar size proteins. C. Ramachandran plot for the MEPVC illustrating distribution of torsion angles (blue squares) comparative to the core (shown in red) and allowed (shown in brown) regions. Residues in the generously allowed region are shown in dark yellow whereas disallowed regions are depicted in pale yellow."}