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PMC:7243778 / 8895-9780 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
198 600-604 Gene denotes ACE2 Gene:59272
199 13-21 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T41 2-9 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T42 515-526 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 13-21 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T97 86-88 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T98 99-101 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T99 151-153 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T100 151-153 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T101 164-166 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T102 189-197 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T103 234-242 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T104 244-246 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T105 247-262 http://purl.obolibrary.org/obo/OBI_0100026 denotes is organized in
T106 247-262 http://purl.obolibrary.org/obo/UBERON_0000468 denotes is organized in
T107 285-286 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T108 325-326 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 357-359 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T110 430-432 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T111 614-616 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T112 659-667 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T113 687-688 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 716-718 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T115 716-718 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T116 739-747 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T117 800-802 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T118 821-823 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T35 2-9 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T36 151-153 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T37 515-526 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T38 515-520 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T39 521-526 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T40 716-718 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T41 739-747 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T17 189-204 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T18 484-497 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T70 0-243 Sentence denotes S protein of SARS-CoV is composed of two functionally distinct subunits: the globular S1 subunit (~aa 12–680) allows receptor recognition, whereas the S2 subunit (~aa 681–1255) facilitates membrane fusion and anchors S into the viral membrane.
T71 244-289 Sentence denotes S1 is organized in four distinct domains A–D.
T72 290-447 Sentence denotes Domains S1A and S1B may be used as a receptor-binding domain (RBD, aa 318–510) containing the highly conserved receptor-binding motif (RBM, aa 424–494) [21].
T73 448-618 Sentence denotes Moreover, RBD contains 3 functional glycosylation sites located at amino acids 318, 330 and 357, which are necessary for S expression but do not affect ACE2 binding [22].
T74 619-715 Sentence denotes S1B forms an extended loop on the viral membrane-distal side and is a hypervariable region [20].
T75 716-885 Sentence denotes S2 contains the fusion peptides (FP1 and FP2) [23], two heptad repeat regions (HR1, aa ~889–972 and HR2, aa ~1142–1193) and the well conserved transmembrane domain [24].

2_test

Id Subject Object Predicate Lexical cue
32450171-16122388-66454450 614-616 16122388 denotes 22
32450171-27030273-66454451 763-765 27030273 denotes 23
32450171-15161975-66454452 881-883 15161975 denotes 24