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PMC:7243778 / 28602-29684 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
714 232-236 Gene denotes ACE2 Gene:59272
715 790-791 Gene denotes S Gene:43740568
716 29-39 Species denotes SARS-CoV-2 Tax:2697049
717 76-84 Species denotes SARS-CoV Tax:694009
718 88-98 Species denotes SARS-CoV-2 Tax:2697049
719 442-450 Species denotes SARS-CoV Tax:694009
720 511-521 Species denotes SARS-CoV-2 Tax:2697049
721 603-611 Species denotes SARS-CoV Tax:694009
722 658-668 Species denotes SARS-CoV-2 Tax:2697049
723 725-735 Species denotes SARS-CoV-2 Tax:2697049
724 803-813 Species denotes SARS-CoV-2 Tax:2697049
725 943-951 Species denotes SARS-CoV Tax:694009
726 1058-1066 Species denotes SARS-CoV Tax:694009
727 1071-1081 Species denotes SARS-CoV-2 Tax:2697049
728 142-147 Species denotes human Tax:9606
729 821-830 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T131 154-162 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T132 263-275 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T133 263-267 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T134 647-654 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T135 792-799 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T136 881-903 Body_part denotes cytotoxic T-lymphocyte http://purl.org/sig/ont/fma/fma70573
T137 891-903 Body_part denotes T-lymphocyte http://purl.org/sig/ont/fma/fma62870

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T127 29-37 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T128 76-84 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T129 88-96 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T130 442-450 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T131 511-519 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T132 603-611 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T133 658-666 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T134 725-733 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T135 803-811 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T136 821-830 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T137 943-951 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T138 1058-1066 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T139 1071-1079 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T334 0-2 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T335 6-7 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T336 62-64 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T337 99-102 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T338 142-147 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T339 185-192 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T340 263-267 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T341 307-315 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T342 428-430 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T343 428-430 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T344 454-456 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T345 556-560 http://purl.obolibrary.org/obo/CLO_0001165 denotes 1G10
T346 589-591 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T347 589-591 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T348 711-713 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T349 711-713 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T350 744-745 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T351 761-763 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T352 914-916 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T353 952-954 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T354 952-954 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T161 17-24 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T162 428-430 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T163 589-591 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T164 647-654 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T165 711-713 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T166 752-759 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T167 792-799 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T168 843-850 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T169 952-954 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T22 1024-1049 http://purl.obolibrary.org/obo/GO_0002456 denotes cellular immune responses
T23 1024-1049 http://purl.obolibrary.org/obo/GO_0002449 denotes cellular immune responses
T24 1024-1049 http://purl.obolibrary.org/obo/GO_0002443 denotes cellular immune responses

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T4 556-560 GlycoEpitope denotes 1G10 http://www.glycoepitope.jp/epitopes/AN0438

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T224 0-57 Sentence denotes S1 is a specific antigen for SARS-CoV-2 diagnostics [98].
T225 58-137 Sentence denotes The S1 subunit of SARS-CoV or SARS-CoV-2 has four core domains S1A through S1D.
T226 138-398 Sentence denotes The human 47D11 antibody binds the S1B of both viruses, without competing with S1B binding to ACE2 receptor expressed at the cell surface, and showed cross-neutralizing activity by an unknown mechanism that is different from receptor binding interference [99].
T227 399-522 Sentence denotes An immunogenic domain in the S2 subunit of SARS-CoV S (aa 1029–1192) was highly conserved in several strains of SARS-CoV-2.
T228 523-669 Sentence denotes Four murine monoclonal Abs, 1A9, 1G10, 2B2 and 4B12, against this S2 subunit of SARS-CoV can also cross-reactive with the S protein of SARS-CoV-2.
T229 670-837 Sentence denotes Interestingly, 1A9 can strongly bind the S2 subunit of SARS-CoV-2 through a novel epitope (aa 1111–1130) and can detect S protein in SARS-CoV-2 during infection [100].
T230 838-969 Sentence denotes This epitope also overlaps with one of two cytotoxic T-lymphocyte epitopes (aa 884–891 and 1116–1123) of SARS-CoV S2 subunit [101].
T231 970-1082 Sentence denotes 1A9 is therefore suggested to induce both humoral and cellular immune responses against SARS-CoV and SARS-CoV-2.

2_test

Id Subject Object Predicate Lexical cue
32450171-19475608-66454513 964-967 19475608 denotes 101