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PMC:7243778 / 11153-12245 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
240 548-556 Species denotes SARS-CoV Tax:694009
241 558-566 Species denotes MERS-CoV Tax:1335626
242 568-578 Species denotes SARS-CoV-2 Tax:2697049
243 897-905 Species denotes SARS-CoV Tax:694009
244 910-920 Species denotes SARS-CoV-2 Tax:2697049
245 950-958 Species denotes SARS-CoV Tax:694009
246 974-982 Species denotes MERS-CoV Tax:1335626
247 993-1003 Species denotes SARS-CoV-2 Tax:2697049
252 7-15 Species denotes SARS-CoV Tax:694009
253 115-123 Species denotes SARS-CoV Tax:694009
254 393-401 Species denotes SARS-CoV Tax:694009
255 434-442 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T48 35-46 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T49 68-75 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T50 99-111 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T51 537-544 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T52 1075-1084 Body_part denotes Cytoplasm http://purl.org/sig/ont/fma/fma66835

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 7-15 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 115-123 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 393-401 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 434-442 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 548-556 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 568-576 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 897-905 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 910-918 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 950-958 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 993-1001 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T130 222-224 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T131 316-318 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T132 316-318 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T133 365-366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 1009-1015 http://purl.obolibrary.org/obo/SO_0000418 denotes Signal
T135 1016-1023 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T136 1036-1043 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T137 1071-1073 http://purl.obolibrary.org/obo/PR_000005794 denotes CP

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T44 35-46 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T45 35-40 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T46 41-46 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T47 68-75 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T48 99-111 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T49 316-318 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T50 537-544 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T51 1005-1007 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T52 1016-1023 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T53 1025-1027 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T54 1036-1043 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T55 1045-1047 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T57 1071-1073 Chemical denotes CP http://purl.obolibrary.org/obo/CHEBI_3380|http://purl.obolibrary.org/obo/CHEBI_73461

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T21 374-389 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T86 0-76 Sentence denotes RBD of SARS-CoV is composed of 193 amino acids (N318-V510) within S protein.
T87 77-407 Sentence denotes Five regions on the S glycoprotein of SARS-CoV (residues 274–306, 510–586, 587–628, 784–803 and 870–893), in which three first regions belong to S1 subunit in the CTD2 and CTD3 (C-terminal domain) and two later belong to HR1 domain of the S2 subunit, were predicted to be associated with a robust immune response to SARS-CoV [30].
T88 408-527 Sentence denotes Several specific-nAbs for SARS-CoV were discovered; unfortunately none of them are under clinical trial [31] (Fig. 2 ).
T89 528-628 Sentence denotes Fig. 2 S protein of SARS-CoV, MERS-CoV, SARS-CoV-2 with its subdomains are the target of antibodies.
T90 629-869 Sentence denotes The antibodies cited in this review have different origins or techniques, and some of them have specific targets such as the receptor binding domain (RBD) containing the receptor binding motif (RBM), the heptad repeat regions (HR1 and HR2).
T91 870-921 Sentence denotes Some antibodies could bind SARS-CoV and SARS-CoV-2.
T92 922-939 Sentence denotes Background color:
T93 940-1004 Sentence denotes Black for SARS-CoV, dark grey for MERS-CoV, grey for SARS-CoV-2.
T94 1005-1008 Sentence denotes SP:
T95 1009-1028 Sentence denotes Signal peptide, FP:
T96 1029-1048 Sentence denotes Fusion peptide, TM:
T97 1049-1074 Sentence denotes Transmembrane domain, CP:
T98 1075-1092 Sentence denotes Cytoplasm domain.

2_test

Id Subject Object Predicate Lexical cue
32450171-32183941-66454456 403-405 32183941 denotes 30