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PMC:7242185 / 4342-6967 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 2067-2084 Body_part denotes coronary arteries http://purl.org/sig/ont/fma/fma3800
T5 2156-2160 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T6 2178-2193 Body_part denotes coronary artery http://purl.org/sig/ont/fma/fma49893
T7 2216-2222 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T8 2360-2370 Body_part denotes troponin I http://purl.org/sig/ont/fma/fma62340
T9 2360-2368 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 2067-2084 Body_part denotes coronary arteries http://purl.obolibrary.org/obo/UBERON_0001621
T2 2178-2193 Body_part denotes coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T3 2187-2193 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T4 2216-2222 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 528-536 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 602-611 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 664-672 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 673-682 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T29 1089-1094 Disease denotes STEMI http://purl.obolibrary.org/obo/MONDO_0041656
T30 1148-1153 Disease denotes STEMI http://purl.obolibrary.org/obo/MONDO_0041656
T31 1196-1200 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T32 1390-1395 Disease denotes STEMI http://purl.obolibrary.org/obo/MONDO_0041656
T33 1491-1496 Disease denotes STEMI http://purl.obolibrary.org/obo/MONDO_0041656
T34 1738-1741 Disease denotes CAD http://purl.obolibrary.org/obo/MONDO_0005010|http://purl.obolibrary.org/obo/MONDO_0018922
T36 1878-1881 Disease denotes CKD http://purl.obolibrary.org/obo/MONDO_0005300
T37 2002-2021 Disease denotes Tako-Tsubo syndrome http://purl.obolibrary.org/obo/MONDO_0019018
T38 2025-2046 Disease denotes myocardial infarction http://purl.obolibrary.org/obo/MONDO_0005068
T39 2100-2119 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T40 2126-2149 Disease denotes acute coronary syndrome http://purl.obolibrary.org/obo/MONDO_0005542
T41 2173-2176 Disease denotes CAD http://purl.obolibrary.org/obo/MONDO_0005010|http://purl.obolibrary.org/obo/MONDO_0018922
T43 2178-2201 Disease denotes coronary artery disease http://purl.obolibrary.org/obo/MONDO_0005010
T44 2187-2201 Disease denotes artery disease http://purl.obolibrary.org/obo/MONDO_0000473
T45 2203-2206 Disease denotes CKD http://purl.obolibrary.org/obo/MONDO_0005300
T46 2208-2230 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T47 2216-2230 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T49 2232-2275 Disease denotes COPD, chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T50 2258-2275 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T51 2448-2482 Disease denotes ST-elevation myocardial infarction http://purl.obolibrary.org/obo/MONDO_0041656
T52 2461-2482 Disease denotes myocardial infarction http://purl.obolibrary.org/obo/MONDO_0005068
T53 2583-2588 Disease denotes STEMI http://purl.obolibrary.org/obo/MONDO_0041656
T54 2590-2624 Disease denotes ST-elevation myocardial infarction http://purl.obolibrary.org/obo/MONDO_0041656
T55 2603-2624 Disease denotes myocardial infarction http://purl.obolibrary.org/obo/MONDO_0005068

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T19 47-48 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 103-106 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T21 223-224 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 798-799 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 1106-1108 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T24 1142-1144 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T25 1201-1203 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T26 1348-1350 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T27 1460-1462 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T28 1659-1661 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T29 1742-1744 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T30 1822-1824 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T31 1947-1950 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T32 1962-1964 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T33 2076-2084 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
T34 2076-2084 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arteries
T35 2187-2193 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T36 2187-2193 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T37 2216-2222 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T38 2216-2222 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T39 2216-2222 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T40 2448-2450 http://purl.obolibrary.org/obo/CLO_0009141 denotes ST
T41 2448-2450 http://purl.obolibrary.org/obo/CLO_0050980 denotes ST
T42 2590-2592 http://purl.obolibrary.org/obo/CLO_0009141 denotes ST
T43 2590-2592 http://purl.obolibrary.org/obo/CLO_0050980 denotes ST

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 298-300 Chemical denotes IR http://purl.obolibrary.org/obo/CHEBI_74061
T6 333-335 Chemical denotes IR http://purl.obolibrary.org/obo/CHEBI_74061
T7 1031-1033 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T8 1058-1061 Chemical denotes AGE http://purl.obolibrary.org/obo/CHEBI_84123
T9 1819-1821 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T10 2096-2098 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T11 2448-2450 Chemical denotes ST http://purl.obolibrary.org/obo/CHEBI_141393
T12 2590-2592 Chemical denotes ST http://purl.obolibrary.org/obo/CHEBI_141393

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 602-611 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 1196-1200 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T7 1264-1276 Phenotype denotes HYPERTENSION http://purl.obolibrary.org/obo/HP_0000822
T8 1542-1554 Phenotype denotes DYSLIPIDEMIA http://purl.obolibrary.org/obo/HP_0003119
T9 2025-2046 Phenotype denotes myocardial infarction http://purl.obolibrary.org/obo/HP_0001658
T10 2100-2119 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T11 2208-2230 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T12 2232-2236 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T13 2238-2275 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T14 2461-2482 Phenotype denotes myocardial infarction http://purl.obolibrary.org/obo/HP_0001658
T15 2603-2624 Phenotype denotes myocardial infarction http://purl.obolibrary.org/obo/HP_0001658

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 732-753 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 740-753 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T31 0-46 Sentence denotes Patient characteristics are shown in Table 1 .
T32 47-198 Sentence denotes A total of 246 ACS-patients were included in the study (162 patients with ACS admitted in March 2019, and 84 patients with ACS admitted in March 2020).
T33 199-469 Sentence denotes During the case period, a total of 84 hospital admissions for ACS were observed, accounting for an IR of 2.7 admissions per day vs an IR of 5.2 admissions per day observed in the control period (odds ratio [OR], 0.52; 95% confidence interval [CI], 0.39-0.67; P < 0.001).
T34 470-877 Sentence denotes Of the 84 patients with ACS in 2020, 26 were positive for COVID-19; of these, 5 patients were already hospitalized for interstitial pneumonia, whereas—in the remaining 21 cases—the diagnosis of COVID-19 infection was an incidental finding from the routine COVID reverse transcription polymerase chain reaction (RT-PCR) assay of a nasal swab performed immediately at admission before cardiac catheterization.
T35 878-946 Sentence denotes Table 1 Patients clinical characteristics and acute clinical outcome
T36 947-1057 Sentence denotes Group 2019162 patients Group 202084 patients P value Group I 2019162 patients Group II 202084 patients P value
T37 1058-1119 Sentence denotes AGE 69.9 + 32.6 68.3 + 30.9 ns STEMI 59 (36.4%) 34 (40.5%) ns
T38 1120-1195 Sentence denotes SEX M:113/F:49 M:62/F:22 ns STEMI rr > 24 hours 7 (4.3%) 15 (17.8%) < 0.001
T39 1196-1263 Sentence denotes COPD 35 (21.6%) 7 (8.3%) < 0.01 NSTEMI 93 (57.4%) 33 (39.3%) < 0.01
T40 1264-1338 Sentence denotes HYPERTENSION 108 (66.7%) 65 (77.4%) ns Others ACS 3 (1.9%) 2 (2.4%) < 0.01
T41 1339-1440 Sentence denotes DIABETES 48 (29.6%) 31 (36.9%) ns Door to balloon (STEMI) 40 + 12 (minutes) 66 + 17 (minutes) < 0.001
T42 1441-1541 Sentence denotes SMOKING 85 (52.5%) 34 (40.5%) ns Symptoms to PCI (STEMI) 3.9 + 2.2 (hours) 5.8 + 3.1 (hours) < 0.001
T43 1542-1649 Sentence denotes DYSLIPIDEMIA 100 (61.7%) 58 (69%) ns Symptoms to PCI (NSTEMI) 18.8 + 20 (hours) 36.9 + 38.4 (hours) < 0.001
T44 1650-1731 Sentence denotes BMI > 30 36 (22.2%) 23 (27.4%) ns hs-cTnI (basal) 1142 + 4017 5138 + 9408 < 0.001
T45 1732-1818 Sentence denotes KNOWN CAD 41 (25.3%) 31 (36.9%) ns hs-cTnI (peak) 9143 + 13,825 13,681 + 10,936 < 0.01
T46 1819-1877 Sentence denotes AF 18 (11.1%) 6 (7.1%) ns LVEF 48.9 + 9.4 45.9 + 12 < 0.05
T47 1878-1934 Sentence denotes CKD 21 (13%) 12 (14.3%) ns LVEF < 40% 24.7% 42.8% < 0.01
T48 1935-1990 Sentence denotes GRACE SCORE 116 + 26 126 + 27 < 0.01 Death 1.8% 4.7% ns
T49 1991-2095 Sentence denotes Other ACS (Tako-Tsubo syndrome or myocardial infarction with nonobstructive coronary arteries [MINOCA]).
T50 2096-2625 Sentence denotes AF, atrial fibrillation; ACS, acute coronary syndrome; BMI, body mass index; CAD, coronary artery disease; CKD, chronic kidney disease; COPD, chronic obstructive pulmonary disease; GRACE, Global Registry of Acute Coronary Events; hs-cTnI, high-sensitivity cardiac troponin I (lab range 0-58 ng/L); LVEF, left-ventricular ejection fraction; NSTEMI, non–ST-elevation myocardial infarction; rr, recommended reperfusion; PCI, percutaneous coronary intervention; rr, recommended reperfusion; STEMI, ST-elevation myocardial infarction.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
62 1687-1691 Gene denotes cTnI Gene:7137
63 1770-1774 Gene denotes cTnI Gene:7137
64 1310-1315 Gene denotes ACS 3 Gene:7291
65 961-969 Species denotes patients Tax:9606
66 983-991 Species denotes patients Tax:9606
67 1016-1024 Species denotes patients Tax:9606
68 1041-1049 Species denotes patients Tax:9606
69 1196-1200 Disease denotes COPD MESH:D029424
70 1339-1347 Disease denotes DIABETES MESH:D003920
71 1819-1821 Disease denotes AF MESH:D001281
72 1878-1881 Disease denotes CKD MESH:D012080
73 1972-1977 Disease denotes Death MESH:D003643
75 886-894 Species denotes Patients Tax:9606
78 2002-2021 Disease denotes Tako-Tsubo syndrome MESH:D054549
79 2025-2046 Disease denotes myocardial infarction MESH:D009203
91 2329-2333 Gene denotes cTnI Gene:7137
92 2096-2098 Disease denotes AF MESH:D001281
93 2100-2119 Disease denotes atrial fibrillation MESH:D001281
94 2126-2149 Disease denotes acute coronary syndrome MESH:D054058
95 2178-2201 Disease denotes coronary artery disease MESH:D003324
96 2203-2206 Disease denotes CKD MESH:D012080
97 2208-2230 Disease denotes chronic kidney disease MESH:D051436
98 2232-2236 Disease denotes COPD MESH:D029424
99 2238-2275 Disease denotes chronic obstructive pulmonary disease MESH:D029424
100 2461-2482 Disease denotes myocardial infarction MESH:D009203
101 2603-2624 Disease denotes myocardial infarction MESH:D009203
113 0-7 Species denotes Patient Tax:9606
114 66-74 Species denotes patients Tax:9606
115 107-115 Species denotes patients Tax:9606
116 156-164 Species denotes patients Tax:9606
117 480-488 Species denotes patients Tax:9606
118 550-558 Species denotes patients Tax:9606
119 528-536 Disease denotes COVID-19 MESH:C000657245
120 602-611 Disease denotes pneumonia MESH:D011014
121 664-672 Disease denotes COVID-19 MESH:C000657245
122 673-682 Disease denotes infection MESH:D007239
123 726-731 Disease denotes COVID MESH:C000657245