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PMC:7242012 / 115-14501 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 55-84 Gene denotes angiotensin‐converting enzyme Gene:1636
7 143-167 Disease denotes coronavirus disease 2019 MESH:C000657245
9 313-339 Disease denotes acute respiratory syndrome MESH:D012120
32 608-625 Species denotes novel coronavirus Tax:2697049
33 627-636 Species denotes 2019‐nCoV Tax:2697049
34 707-716 Species denotes 2019‐nCoV Tax:2697049
35 722-735 Species denotes coronaviruses Tax:11118
36 865-888 Species denotes human coronavirus, SARS Tax:694009
37 889-892 Species denotes CoV Tax:11118
38 985-995 Species denotes SARS‐CoV‐2 Tax:2697049
39 1103-1113 Species denotes SARS‐CoV‐2 Tax:2697049
40 1183-1193 Species denotes SARS‐CoV‐2 Tax:2697049
41 1657-1667 Species denotes SARS‐CoV‐2 Tax:2697049
42 1718-1726 Species denotes patients Tax:9606
43 452-461 Disease denotes pneumonia MESH:D011014
44 463-482 Disease denotes respiratory failure MESH:D012131
45 488-493 Disease denotes death MESH:D003643
46 914-940 Disease denotes acute respiratory syndrome MESH:D012120
47 1138-1162 Disease denotes coronavirus disease 2019 MESH:C000657245
48 1164-1172 Disease denotes COVID‐19 MESH:C000657245
49 1564-1572 Disease denotes COVID‐19 MESH:C000657245
50 1732-1740 Disease denotes COVID‐19 MESH:C000657245
51 1781-1801 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
52 1843-1851 Disease denotes COVID‐19 MESH:C000657245
53 1891-1899 Disease denotes COVID‐19 MESH:C000657245
55 1935-1943 Disease denotes COVID‐19 MESH:C000657245
67 2334-2341 Species denotes persons Tax:9606
68 2032-2040 Disease denotes COVID‐19 MESH:C000657245
69 2056-2062 Disease denotes deaths MESH:D003643
70 2184-2192 Disease denotes COVID‐19 MESH:C000657245
71 2203-2209 Disease denotes deaths MESH:D003643
72 2346-2354 Disease denotes COVID‐19 MESH:C000657245
73 2399-2407 Disease denotes COVID‐19 MESH:C000657245
74 2452-2460 Disease denotes COVID‐19 MESH:C000657245
75 2541-2547 Disease denotes deaths MESH:D003643
76 2645-2651 Disease denotes deaths MESH:D003643
77 2699-2707 Disease denotes COVID‐19 MESH:C000657245
87 2772-2782 Species denotes SARS‐CoV‐2 Tax:2697049
88 2990-3000 Species denotes SARS‐CoV‐2 Tax:2697049
89 3068-3078 Species denotes SARS‐CoV‐2 Tax:2697049
90 3206-3213 Species denotes persons Tax:9606
91 3412-3422 Species denotes SARS‐CoV‐2 Tax:2697049
92 2860-2868 Disease denotes infected MESH:D007239
93 3153-3161 Disease denotes infected MESH:D007239
94 3224-3232 Disease denotes COVID‐19 MESH:C000657245
95 3506-3526 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
106 3611-3642 Gene denotes angiotensin‐converting enzyme 2 Gene:59272
107 3644-3648 Gene denotes ACE2 Gene:59272
108 3746-3750 Gene denotes ACE2 Gene:59272
109 3967-3980 Gene denotes interleukin‐6 Gene:3569
110 3982-3986 Gene denotes IL‐6 Gene:3569
111 3581-3589 Species denotes SARS‐CoV Tax:694009
112 3591-3601 Species denotes SARS‐CoV‐2 Tax:2697049
113 3842-3852 Species denotes SARS‐CoV‐2 Tax:2697049
114 3820-3828 Disease denotes COVID‐19 MESH:C000657245
115 3885-3890 Disease denotes death MESH:D003643
128 4571-4579 Species denotes patients Tax:9606
129 4090-4099 Disease denotes infection MESH:D007239
130 4112-4120 Disease denotes COVID‐19 MESH:C000657245
131 4214-4222 Disease denotes COVID‐19 MESH:C000657245
132 4227-4232 Disease denotes fever MESH:D005334
133 4251-4256 Disease denotes cough MESH:D003371
134 4354-4361 Disease denotes anosmia MESH:D000857
135 4366-4373 Disease denotes ageusia MESH:D000370
136 4407-4415 Disease denotes COVID‐19 MESH:C000657245
137 4494-4505 Disease denotes lymphopenia MESH:D008231
138 4585-4593 Disease denotes COVID‐19 MESH:C000657245
139 4690-4705 Disease denotes viral pneumonia
153 5145-5163 Gene denotes C‐reactive protein Gene:1401
154 4862-4870 Species denotes patients Tax:9606
155 4895-4900 Disease denotes Fever MESH:D005334
156 4911-4916 Disease denotes Cough MESH:D003371
157 4951-4962 Disease denotes Dyspnea 19 MESH:C000657245
158 4969-4976 Disease denotes Fatigue MESH:D005221
159 4977-4984 Disease denotes Myalgia MESH:D063806
160 4995-5003 Disease denotes Headache MESH:D006261
161 5014-5020 Disease denotes Nausea MESH:D009325
162 5039-5047 Disease denotes Diarrhea MESH:D003967
163 5113-5124 Disease denotes Lymphopenia MESH:D008231
164 5320-5355 Disease denotes Acute respiratory distress syndrome MESH:D012128
165 5365-5374 Disease denotes Mortality MESH:D003643
167 4737-4745 Disease denotes COVID‐19 MESH:C000657245
172 6131-6141 Species denotes SARS‐CoV‐2 Tax:2697049
173 5866-5874 Disease denotes COVID‐19 MESH:C000657245
174 6046-6054 Disease denotes COVID‐19 MESH:C000657245
175 6417-6425 Disease denotes COVID‐19 MESH:C000657245
181 6437-6445 Disease denotes COVID‐19 MESH:C000657245
182 6494-6502 Disease denotes COVID‐19 MESH:C000657245
183 6549-6558 Disease denotes pneumonia MESH:D011014
184 6575-6582 Disease denotes dyspnea MESH:D004417
185 6612-6629 Disease denotes pulmonary disease MESH:D008171
207 6794-6797 Species denotes men Tax:9606
208 6817-6825 Species denotes patients Tax:9606
209 6926-6932 Species denotes people Tax:9606
210 6985-6992 Species denotes persons Tax:9606
211 7065-7073 Species denotes patients Tax:9606
212 6762-6770 Disease denotes COVID‐19 MESH:C000657245
213 6892-6900 Disease denotes COVID‐19 MESH:C000657245
214 6909-6915 Disease denotes deaths MESH:D003643
215 6963-6969 Disease denotes Deaths MESH:D003643
216 7079-7087 Disease denotes COVID‐19 MESH:C000657245
217 7124-7131 Disease denotes obesity MESH:D009765
218 7133-7145 Disease denotes hypertension MESH:D006973
219 7147-7155 Disease denotes diabetes MESH:D003920
220 7161-7183 Disease denotes cardiovascular disease MESH:D002318
221 7278-7286 Disease denotes COVID‐19 MESH:C000657245
222 7296-7309 Disease denotes liver disease MESH:D008107
223 7321-7330 Disease denotes cirrhosis MESH:D005355
224 7554-7562 Disease denotes COVID‐19 MESH:C000657245
225 7646-7651 Disease denotes COVID MESH:C000657245
226 7652-7661 Disease denotes mortality MESH:D003643
227 7698-7706 Disease denotes COVID‐19 MESH:C000657245
235 8054-8062 Species denotes Patients Tax:9606
236 8144-8156 Disease denotes Hypertension MESH:D006973
237 8165-8182 Disease denotes Diabetes mellitus MESH:D003920
238 8202-8224 Disease denotes Cardiovascular disease MESH:D002318
239 8244-8265 Disease denotes Chronic renal disease MESH:D051436
240 8293-8306 Disease denotes liver disease MESH:D008107
241 8357-8366 Disease denotes Mortality MESH:D003643
244 7907-7914 Species denotes Persons Tax:9606
245 7920-7928 Disease denotes COVID‐19 MESH:C000657245
253 9278-9282 Gene denotes IL‐6 Gene:3569
254 9145-9155 Chemical denotes remdesivir MESH:C000606551
255 9424-9442 Chemical denotes hydroxychloroquine MESH:D006886
256 9446-9457 Chemical denotes chloroquine MESH:D002738
257 9227-9235 Disease denotes COVID‐19 MESH:C000657245
258 9360-9378 Disease denotes cardiac arrythmias MESH:D001145
259 9475-9483 Disease denotes COVID‐19 MESH:C000657245
266 9784-9792 Species denotes patients Tax:9606
267 10732-10742 Species denotes SARS‐CoV‐2 Tax:2697049
268 9798-9806 Disease denotes COVID‐19 MESH:C000657245
269 10343-10351 Disease denotes COVID‐19 MESH:C000657245
270 10567-10573 Disease denotes deaths MESH:D003643
271 10628-10636 Disease denotes COVID‐19 MESH:C000657245
296 11539-11546 Species denotes persons Tax:9606
297 11626-11633 Species denotes Persons Tax:9606
298 12003-12011 Species denotes patients Tax:9606
299 12159-12167 Species denotes patients Tax:9606
300 12342-12350 Species denotes patients Tax:9606
301 12351-12358 Species denotes Persons Tax:9606
302 12835-12856 Species denotes coronavirus/2019-ncov Tax:2697049
303 11038-11043 Chemical denotes water MESH:D014867
304 11244-11249 Chemical denotes water MESH:D014867
305 11387-11392 Chemical denotes water MESH:D014867
306 10957-10965 Disease denotes COVID‐19 MESH:C000657245
307 11140-11145 Disease denotes cough MESH:D003371
308 11451-11459 Disease denotes COVID‐19 MESH:C000657245
309 11615-11620 Disease denotes COVID MESH:C000657245
310 12072-12080 Disease denotes COVID‐19 MESH:C000657245
311 12237-12246 Disease denotes infection MESH:D007239
312 12376-12384 Disease denotes COVID‐19 MESH:C000657245
313 12717-12725 Disease denotes COVID‐19 MESH:C000657245
314 12942-12977 Disease denotes coronavirus-2019 Infectious Disease MESH:C000657245
315 13038-13046 Disease denotes COVID-19 MESH:C000657245
316 13102-13116 Disease denotes Liver Diseases MESH:D008107
317 13152-13160 Disease denotes covid-19 MESH:C000657245
318 13236-13244 Disease denotes covid-19 MESH:C000657245
319 13342-13350 Disease denotes covid-19 MESH:C000657245
321 10847-10855 Disease denotes COVID‐19 MESH:C000657245
332 13781-13791 Species denotes SARS‐CoV‐2 Tax:2697049
333 13801-13806 Species denotes human Tax:9606
334 13905-13908 Species denotes Men Tax:9606
335 13944-13951 Species denotes persons Tax:9606
336 14181-14188 Species denotes persons Tax:9606
337 13886-13894 Disease denotes COVID‐19 MESH:C000657245
338 13994-14002 Disease denotes COVID‐19 MESH:C000657245
339 14007-14012 Disease denotes death MESH:D003643
340 14164-14172 Disease denotes infected MESH:D007239
341 14225-14233 Disease denotes COVID‐19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 232-245 Body_part denotes interleukin‐6 http://purl.org/sig/ont/fma/fma264829
T2 232-243 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T3 2931-2935 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T4 3691-3716 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T5 3711-3716 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T6 3735-3740 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T7 3768-3773 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T8 3775-3797 Body_part denotes gastrointestinal tract http://purl.org/sig/ont/fma/fma71132
T9 3803-3810 Body_part denotes kidneys http://purl.org/sig/ont/fma/fma7203
T10 3880-3884 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T11 3950-3959 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T12 3967-3980 Body_part denotes interleukin‐6 http://purl.org/sig/ont/fma/fma264829
T13 3967-3978 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T14 4000-4008 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T15 4477-4486 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T16 4531-4538 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T17 4638-4643 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T18 5076-5086 Body_part denotes Leukocytes http://purl.org/sig/ont/fma/fma62852
T19 5156-5163 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 5174-5181 Body_part denotes Alanine http://purl.org/sig/ont/fma/fma82749
T21 5254-5259 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 5952-5960 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T23 5997-6003 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T24 6142-6145 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T25 6150-6153 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T26 6402-6406 Body_part denotes sole http://purl.org/sig/ont/fma/fma25000
T27 7296-7301 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T28 8293-8298 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T29 9184-9194 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T30 9299-9313 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871
T31 11086-11090 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T32 11092-11096 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T33 11102-11107 Body_part denotes mouth http://purl.org/sig/ont/fma/fma49184
T34 11153-11159 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T35 11177-11182 Body_part denotes elbow http://purl.org/sig/ont/fma/fma24901
T36 11822-11826 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T37 13102-13107 Body_part denotes Liver http://purl.org/sig/ont/fma/fma7197
T38 13213-13218 Body_part denotes Liver http://purl.org/sig/ont/fma/fma7197
T39 13253-13258 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 2931-2935 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T2 3768-3773 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T3 4000-4014 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T4 4638-4643 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 5254-5259 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 5997-6003 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T7 7296-7301 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T8 8293-8298 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T9 10374-10379 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T10 10996-11001 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T11 11092-11096 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T12 11102-11107 Body_part denotes mouth http://purl.obolibrary.org/obo/UBERON_0000165
T13 11122-11127 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T14 11153-11159 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T15 11177-11182 Body_part denotes elbow http://purl.obolibrary.org/obo/UBERON_0001461
T16 11800-11804 Body_part denotes feet http://purl.obolibrary.org/obo/UBERON_0002387
T17 11822-11826 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T18 13102-13107 Body_part denotes Liver http://purl.obolibrary.org/obo/UBERON_0002107
T19 13213-13218 Body_part denotes Liver http://purl.obolibrary.org/obo/UBERON_0002107
T20 13253-13258 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T21 14282-14287 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 134-142 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 143-167 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T5 301-305 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T6 306-339 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 452-461 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 463-482 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T9 884-888 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 907-940 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T11 942-946 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 985-989 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 1103-1107 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 1138-1162 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T15 1164-1172 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 1183-1187 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 1564-1572 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 1657-1661 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 1732-1740 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 1781-1785 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 1792-1801 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 1843-1851 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 1891-1899 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 1935-1943 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 2032-2040 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 2184-2192 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 2346-2354 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 2399-2407 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 2452-2460 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 2699-2707 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 2772-2776 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 2990-2994 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 3068-3072 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 3089-3099 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T35 3224-3232 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 3412-3416 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 3506-3510 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 3517-3526 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 3581-3585 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 3591-3595 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 3820-3828 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 3842-3846 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 4090-4099 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T44 4112-4120 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 4214-4222 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 4354-4361 Disease denotes anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T47 4407-4415 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 4494-4505 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T49 4585-4593 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 4690-4705 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T51 4696-4705 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T52 4737-4745 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 5039-5047 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T54 5113-5124 Disease denotes Lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T55 5320-5355 Disease denotes Acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T56 5326-5355 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T57 5569-5577 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 5866-5874 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 6046-6054 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 6131-6135 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 6417-6425 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 6437-6445 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T63 6494-6502 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 6549-6558 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T65 6612-6629 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T66 6652-6656 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T67 6762-6770 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 6892-6900 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 7079-7087 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 7124-7131 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T71 7133-7145 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T72 7147-7155 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T73 7161-7183 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T74 7278-7286 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 7296-7309 Disease denotes liver disease http://purl.obolibrary.org/obo/MONDO_0005154
T76 7321-7330 Disease denotes cirrhosis http://purl.obolibrary.org/obo/MONDO_0005155
T77 7554-7562 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T78 7698-7706 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 7920-7928 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 8128-8135 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T81 8144-8156 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T82 8165-8182 Disease denotes Diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T83 8202-8224 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T84 8244-8265 Disease denotes Chronic renal disease http://purl.obolibrary.org/obo/MONDO_0024327
T85 8252-8265 Disease denotes renal disease http://purl.obolibrary.org/obo/MONDO_0002118|http://purl.obolibrary.org/obo/MONDO_0005240
T87 8293-8306 Disease denotes liver disease http://purl.obolibrary.org/obo/MONDO_0005154
T88 8622-8630 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T89 9227-9235 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T90 9475-9483 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T91 9798-9806 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T92 10343-10351 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T93 10628-10636 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T94 10732-10736 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T95 10847-10855 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 10957-10965 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T97 11451-11459 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 11615-11623 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 12072-12080 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 12237-12246 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T101 12376-12384 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 12717-12725 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 12959-12969 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T104 13038-13046 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T105 13546-13554 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 13781-13785 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 13886-13894 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T108 13994-14002 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T109 14225-14233 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 87-90 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T3 232-245 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin‐6
T4 357-369 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T5 429-431 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T6 518-519 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 525-531 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T8 606-607 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 739-743 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T10 802-808 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T11 865-870 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T12 949-955 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 , 4
T13 1002-1008 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T14 1056-1068 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T15 1097-1102 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 1344-1345 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1346-1348 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T18 1478-1479 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1539-1541 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T20 1573-1574 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1977-1979 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 2418-2424 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T23 2470-2473 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 2588-2591 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 2659-2665 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T26 2931-2935 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T27 2968-2975 http://purl.obolibrary.org/obo/BFO_0000030 denotes objects
T28 3379-3385 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T29 3700-3710 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T30 3711-3716 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T31 3735-3740 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T32 3768-3773 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T33 3768-3773 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T34 3768-3773 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T35 3768-3773 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T36 3775-3797 http://purl.obolibrary.org/obo/UBERON_0005409 denotes gastrointestinal tract
T37 3803-3810 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidneys
T38 3803-3810 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidneys
T39 3803-3810 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidneys
T40 3880-3884 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T41 3923-3924 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 3967-3980 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin‐6
T43 4161-4165 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1‐14
T44 4178-4184 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T45 4334-4337 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T46 4468-4469 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 4599-4600 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 4638-4643 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T49 4942-4944 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T50 4965-4967 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T51 5104-5106 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T52 5254-5259 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T53 5886-5890 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T54 5892-5898 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T55 5934-5941 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T56 6086-6093 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T57 6095-6101 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T58 6115-6120 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T59 6200-6204 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T60 6336-6341 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T61 6458-6459 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 6688-6689 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 6959-6961 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T64 7021-7023 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T65 7189-7191 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T66 7227-7230 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T67 7234-7235 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 7296-7301 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T69 7296-7301 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T70 7332-7335 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T71 7345-7346 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 8109-8111 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T73 8114-8116 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T74 8198-8200 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T75 8240-8242 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T76 8293-8298 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T77 8293-8298 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T78 8308-8313 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1% 1
T79 8342-8347 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3% 6
T80 8437-8440 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T81 8514-8516 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T82 8887-8888 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 8913-8914 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 9157-9158 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 9485-9486 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 9583-9585 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T87 9624-9625 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 9661-9662 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 9971-9978 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T90 10386-10393 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T91 10472-10479 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T92 10651-10658 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T93 10882-10889 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing
T94 11086-11090 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T95 11092-11096 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T96 11102-11107 http://www.ebi.ac.uk/efo/EFO_0000825 denotes mouth
T97 11151-11152 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 11647-11653 http://purl.obolibrary.org/obo/PR_000001898 denotes call a
T99 11814-11815 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 11822-11826 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T101 12278-12285 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T102 12881-12893 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T103 13102-13107 http://purl.obolibrary.org/obo/UBERON_0002107 denotes Liver
T104 13102-13107 http://www.ebi.ac.uk/efo/EFO_0000887 denotes Liver
T105 13213-13218 http://purl.obolibrary.org/obo/UBERON_0002107 denotes Liver
T106 13213-13218 http://www.ebi.ac.uk/efo/EFO_0000887 denotes Liver
T107 13253-13258 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T108 13253-13258 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T109 13339-13341 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T110 13795-13796 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 13801-13806 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T112 14141-14148 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 55-66 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T2 227-229 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T4 3611-3622 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T5 3982-3984 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T7 4531-4538 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T8 5156-5163 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 5174-5181 Chemical denotes Alanine http://purl.obolibrary.org/obo/CHEBI_16449
T10 9145-9155 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T11 9174-9183 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T12 9184-9194 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T13 9195-9202 Chemical denotes prodrug http://purl.obolibrary.org/obo/CHEBI_50266
T14 9278-9280 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T16 9424-9442 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T17 9446-9457 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T18 11038-11043 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T19 11051-11058 Chemical denotes alcohol http://purl.obolibrary.org/obo/CHEBI_16236|http://purl.obolibrary.org/obo/CHEBI_30879
T21 11244-11249 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T22 11307-11320 Chemical denotes disinfectants http://purl.obolibrary.org/obo/CHEBI_48219
T23 11331-11339 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T24 11387-11392 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T25 13339-13341 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 253-274 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 261-274 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 3674-3685 http://purl.obolibrary.org/obo/GO_0006897 denotes endocytosis
T4 3880-3890 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T5 3898-3907 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T6 3898-3907 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T7 4397-4402 http://purl.obolibrary.org/obo/GO_0050909 denotes taste
T8 5802-5823 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T9 5810-5823 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T5 0-35 Sentence denotes Watch the interview with the author
T6 36-49 Sentence denotes Abbreviations
T7 50-86 Sentence denotes ACE2 angiotensin‐converting enzyme 2
T8 87-133 Sentence denotes CDC Centers for Disease Control and Prevention
T9 134-167 Sentence denotes COVID‐19 coronavirus disease 2019
T10 168-190 Sentence denotes CT computed tomography
T11 191-226 Sentence denotes FDA US Food and Drug Administration
T12 227-245 Sentence denotes IL‐6 interleukin‐6
T13 246-300 Sentence denotes RT‐PCR reverse transcription polymerase chain reaction
T14 301-339 Sentence denotes SARS severe acute respiratory syndrome
T15 340-369 Sentence denotes WHO World Health Organization
T16 370-548 Sentence denotes On December 29, 2019, health authorities in China reported 27 cases of an unusual pneumonia, respiratory failure, and death linked to attendance at a live animal market in Wuhan.
T17 549-661 Sentence denotes 1 , 2 On January 7, 2020, Chinese scientists confirmed a novel coronavirus, 2019‐nCoV, as the causative agent.
T18 662-948 Sentence denotes 3 Studies revealed >80% genetic homology of 2019‐nCoV with coronaviruses of bats, presumably the original host; pangolins, suggesting this animal sold at the market as an intermediate host; and another human coronavirus, SARS‐CoV, the cause of severe acute respiratory syndrome (SARS).
T19 949-1035 Sentence denotes 3 , 4 All evidence indicates that SARS‐CoV‐2 is of animal and not laboratory origin.
T20 1036-1174 Sentence denotes 5 The World Health Organization (WHO) later named the novel virus SARS‐CoV‐2 and the related disease coronavirus disease 2019 (COVID‐19).
T21 1175-1267 Sentence denotes 2 , 3 SARS‐CoV‐2 spread quickly through communities in China and other countries (Fig. 1).
T22 1268-1422 Sentence denotes On January 20, 2020, the first case was recognized in the United State when a 35‐year‐old man presented to an urgent care clinic in Snohomish, Washington.
T23 1423-1529 Sentence denotes 6 , 7 On January 30, 2020, WHO declared the outbreak a Public Health Emergency of International Concern.
T24 1530-1584 Sentence denotes On March 11, 2020, WHO designated COVID‐19 a pandemic.
T25 1585-1741 Sentence denotes Almost all countries are implementing public health measures to prevent SARS‐CoV‐2 transmission and are marshaling clinical care for patients with COVID‐19.
T26 1742-1909 Sentence denotes This review highlights key features of SARS‐CoV‐2 infection, the epidemiology and clinical course of COVID‐19, and interventions to stop the growing COVID‐19 pandemic.
T27 1910-1953 Sentence denotes Fig 1 Chronology of the COVID‐19 pandemic.
T28 1955-1967 Sentence denotes Epidemiology
T29 1968-2063 Sentence denotes By March 11, 2020, 105 countries had reported 118,319 confirmed COVID‐19 cases and 4292 deaths.
T30 2064-2138 Sentence denotes 2 Outside China, large epidemics emerged in South Korea, Iran, and Italy.
T31 2139-2225 Sentence denotes By March 14, 2020, approximately one in four COVID‐19 cases and deaths were in Europe.
T32 2226-2293 Sentence denotes The US epidemic accelerated, with cases doubling every 6 to 7 days.
T33 2294-2417 Sentence denotes 7 By March 29, 2020, more than 100,000 persons had COVID‐19 in the United States, the largest burden of COVID‐19 globally.
T34 2418-2565 Sentence denotes 2 , 7 As of April 29, 2020, the COVID‐19 pandemic has grown to more than 3 million confirmed cases and more than 206,000 deaths in 179 countries.
T35 2566-2658 Sentence denotes The United States now has more than 1 million cases (33%) and more than 50,000 deaths (25%).
T36 2659-2771 Sentence denotes 2 , 7 The potential is high for large COVID‐19 epidemics in Brazil, Russia, India, and many African countries.
T37 2772-2976 Sentence denotes SARS‐CoV‐2 is transmitted directly through inhalation or mucosal surface exposure to an infected person’s respiratory droplets or indirectly when touching the face after contact with contaminated objects.
T38 2977-3064 Sentence denotes 2 , 4 , 7 SARS‐CoV‐2 can remain viable on environmental surfaces for up to 72 hours.
T39 3065-3214 Sentence denotes 8 SARS‐CoV‐2 is highly infectious with an R0 of approximately 2.2 to 3.0, meaning each infected person will infect about two to three other persons.
T40 3215-3469 Sentence denotes 7 Large COVID‐19 outbreaks have occurred in health care facilities, households, cruise ships, religious services (e.g., funerals), and other large gatherings 1 , 2 , 7 Individuals can transmit SARS‐CoV‐2 before, during, and after symptomatic disease.
T41 3470-3544 Sentence denotes As many as half of individuals with SARS‐CoV‐2 infection have no symptoms.
T42 3545-3546 Sentence denotes 7
T43 3548-3569 Sentence denotes Clinical Presentation
T44 3570-3811 Sentence denotes Similar to SARS‐CoV, SARS‐CoV‐2 binds to angiotensin‐converting enzyme 2 (ACE2) receptors for entry via endocytosis into alveolar epithelial cells, as well as other cells with ACE2 receptors in the heart, gastrointestinal tract, and kidneys.
T45 3812-4060 Sentence denotes 2 , 4 COVID‐19 results from SARS‐CoV‐2 replication, causing early cell death (i.e., apoptosis) and provoking a storm of proinflammatory cytokines (e.g., interleukin‐6 [IL‐6]) disrupting alveolar walls with resulting fluid accumulation in alveoli.
T46 4061-4062 Sentence denotes 4
T47 4063-4172 Sentence denotes The incubation period from infection to onset of COVID‐19 disease is typically 5 to 7 days (range 1‐14 days).
T48 4173-4267 Sentence denotes 1 , 2 , 7 The most common symptoms of COVID‐19 are fever and nonproductive cough (Table 1).
T49 4268-4425 Sentence denotes 1 , 4 , 7 , 9 The Centers for Disease Control and Prevention (CDC) recently added anosmia and ageusia, the loss of smell and taste, as COVID‐19 symptoms.
T50 4426-4539 Sentence denotes 7 Laboratory findings are remarkable for a normal leukocyte count, lymphopenia, and elevated C‐reactive protein.
T51 4540-4706 Sentence denotes 1 , 6 , 8 Most hospitalized patients with COVID‐19 have a bilateral ground‐glass appearance on chest computed tomography (CT) scan consistent with viral pneumonia.
T52 4707-4792 Sentence denotes Table 1 Clinical Features of COVID‐19 in Wuhan and Multiple Other Locations in China
T53 4793-4851 Sentence denotes Clinical Features Wuhan, China Multiple Locations, China
T54 4852-4885 Sentence denotes Number of patients 10,999 3,062
T55 4886-4894 Sentence denotes Symptoms
T56 4895-4910 Sentence denotes Fever 89% 80%
T57 4911-4926 Sentence denotes Cough 68% 63%
T58 4927-4950 Sentence denotes Expectoration 34% 42%
T59 4951-4968 Sentence denotes Dyspnea 19% 34%
T60 4969-4994 Sentence denotes Fatigue/Myalgia 38% 46%
T61 4995-5013 Sentence denotes Headache 14% 15%
T62 5014-5038 Sentence denotes Nausea/Vomiting 5% 10%
T63 5039-5056 Sentence denotes Diarrhea 4% 13%
T64 5057-5075 Sentence denotes Laboratory results
T65 5076-5112 Sentence denotes Leukocytes in normal range 94% 70%
T66 5113-5134 Sentence denotes Lymphopenia 83% 57%
T67 5135-5173 Sentence denotes Increased C‐reactive protein 61% 74%
T68 5174-5236 Sentence denotes Alanine aminotransferase above upper limit of normal 21% 29%
T69 5237-5244 Sentence denotes Imaging
T70 5245-5272 Sentence denotes Abnormal chest CT 86% 89%
T71 5273-5319 Sentence denotes Bilateral infiltrates (ground glass) 56% 76%
T72 5320-5364 Sentence denotes Acute respiratory distress syndrome 6% 20%
T73 5365-5384 Sentence denotes Mortality 1.4% 6%
T74 5385-5410 Sentence denotes Data are from Guna et al.
T75 5411-5461 Sentence denotes 1 and Centers for Disease Control and Prevention.
T76 5462-5463 Sentence denotes 7
T77 5464-5611 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T78 5612-5794 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.
T79 5795-5891 Sentence denotes Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test.
T80 5892-6041 Sentence denotes 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens.
T81 6042-6094 Sentence denotes 10 COVID‐19 diagnosis might require repeat testing.
T82 6095-6179 Sentence denotes 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available.
T83 6180-6436 Sentence denotes However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis.
T84 6437-6473 Sentence denotes COVID‐19 is commonly a mild disease.
T85 6474-6657 Sentence denotes Of the first 72,314 COVID‐19 disease reported in China, 81% had no or mild pneumonia, 21% had severe dyspnea and radiological evidence of pulmonary disease, and 5% progressed to SARS.
T86 6658-6741 Sentence denotes 1 Individuals can be ill for a week or longer before experiencing severe symptoms.
T87 6742-6853 Sentence denotes The risk for severe COVID‐19 disease is highest for men, older adults, and patients with certain comorbidities.
T88 6854-6948 Sentence denotes In the United States, 80% of reported COVID‐19–related deaths are among people aged ≥65 years.
T89 6949-7010 Sentence denotes 7 , 9 , 11 Deaths are rare among persons <24 years of age.
T90 7011-7203 Sentence denotes 1 , 7 , 11 In the United States, most hospitalized patients with COVID‐19 have comorbid conditions, including obesity, hypertension, diabetes, and cardiovascular disease 7 , 11 (Table 2).
T91 7204-7429 Sentence denotes Although listed by the CDC as a comorbid condition associated with severe COVID‐19, chronic liver disease, including cirrhosis, has not been a common comorbidity associated with hospitalization in the United States (Table 2).
T92 7430-7571 Sentence denotes The high prevalence of comorbid conditions can explain, in part, African Americans’ increased risk for hospitalization with COVID‐19 disease.
T93 7572-7662 Sentence denotes 5 Variable comorbidity prevalence contributes to differences in national COVID mortality.
T94 7663-7870 Sentence denotes Globally, crude fatality rates for COVID‐19 range from 0.2% in Singapore, to 2.0% to 3.0% in South Korea and Germany, to 4.3% for the United States, and to 10% to 13% in Spain, Italy, and the United Kingdom.
T95 7871-7877 Sentence denotes 2 , 5
T96 7878-7951 Sentence denotes Table 2 Comorbidities Among Persons With COVID‐19 Disease, United States
T97 7952-7992 Sentence denotes Condition United States* New York City
T98 7993-8053 Sentence denotes Not Hospitalized Hospitalized Intensive Care Hospitalized
T99 8054-8085 Sentence denotes Patients 5143 1037 457 5700
T100 8086-8127 Sentence denotes One or more condition 27% 71% 78% 88%
T101 8128-8143 Sentence denotes Obesity 42%
T102 8144-8164 Sentence denotes Hypertension 57%
T103 8165-8201 Sentence denotes Diabetes mellitus 6% 24% 32% 34%
T104 8202-8243 Sentence denotes Cardiovascular disease 5% 23% 29% 18%
T105 8244-8284 Sentence denotes Chronic renal disease 1% 9% 12% 0.6%
T106 8285-8322 Sentence denotes Chronic liver disease 1% 1% 2% 9%
T107 8323-8356 Sentence denotes Immunocompromised 3% 6% 9% 2%
T108 8357-8374 Sentence denotes Mortality 21%
T109 8375-8388 Sentence denotes Total 21%
T110 8389-8410 Sentence denotes 1 Comorbidity 88%
T111 8411-8475 Sentence denotes * Based on data from the CDC for all 50 states and territories.
T112 8476-8513 Sentence denotes Otherwise, data are Richardson et al.
T113 8514-8516 Sentence denotes 11
T114 8517-8664 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T115 8665-8847 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.
T116 8848-9081 Sentence denotes The search for effective therapies and a vaccine is occurring at a remarkable pace, with at least 29 studies of therapeutic agents and 5 studies of candidate vaccines registered on ClinicalTrials.org (https://www.clinicaltrials.gov).
T117 9082-9236 Sentence denotes On May 1, 2020, the FDA granted Emergency Use Authorization of remdesivir, a broad‐spectrum antiviral nucleotide prodrug for treatment of severe COVID‐19.
T118 9237-9330 Sentence denotes Studies of monoclonal antibodies against IL‐6 and hyperimmune immunoglobulin are in progress.
T119 9331-9484 Sentence denotes Following reports of serious cardiac arrythmias, the FDA cautioned clinicians of prescribing hydroxychloroquine or chloroquine for treatment of COVID‐19.
T120 9485-9593 Sentence denotes A safe and effective vaccine, if successfully developed, probably will not be available for 12 to 18 months.
T121 9595-9605 Sentence denotes Prevention
T122 9606-9869 Sentence denotes In the absence of a vaccine, prevention is composed of a combination of nonpharmacological interventions for suppression of transmission to R0 <1 and mitigation of the number of patients with COVID‐19 who require intensive care and mechanical respiratory support.
T123 9870-10103 Sentence denotes 12 Interventions include improved personal hygiene promotions, symptomatic screening and laboratory testing for case detection, contact tracing, household quarantine of those with transmission risks, and social distancing (Table 3).
T124 10104-10285 Sentence denotes The United States and most other countries have implemented extensive travel restrictions, workplace and school closures, and cancellation of sporting and other large public events.
T125 10286-10427 Sentence denotes China, South Korea, and Taiwan successfully curbed large COVID‐19 epidemics with prompt scale‐up of testing, contact tracing, and quarantine.
T126 10428-10574 Sentence denotes 2 , 4 , 7 In the United States, although testing rates are low, models suggest prevention measures are reducing transmission and future deaths.
T127 10575-10794 Sentence denotes 13 The US government recently recommended increased COVID‐19 surveillance, testing, and contact tracing with modified social distancing measures to sustain SARS‐CoV‐2 prevention while opening up education and commerce.
T128 10795-10797 Sentence denotes 14
T129 10798-10916 Sentence denotes Table 3 Prevention Measures to Reduce Risks for COVID‐19, Priority Populations for Testing, and Information Resources
T130 10917-10988 Sentence denotes Prevention measures to reduce risks for COVID‐19 Practice good hygiene
T131 10989-11068 Sentence denotes ○ Wash hands often for >20 seconds with soap and water or 60% alcohol sanitizer
T132 11069-11127 Sentence denotes ○ Avoid touching eyes, nose, and mouth with unwashed hands
T133 11128-11182 Sentence denotes ○ Sneeze or cough into a tissue or inside of the elbow
T134 11183-11393 Sentence denotes ○ Disinfect surfaces and used items frequently with soap and water and Environmental Protection Agency–registered household disinfectants or bleach solution (4 teaspoons [20 mL] bleach per quart [or 1 L] water)
T135 11394-11420 Sentence denotes Limit close social contact
T136 11421-11492 Sentence denotes ○ Learn signs and symptoms of COVID‐19, and follow local disease trends
T137 11493-11623 Sentence denotes ○ Stay home as much as possible, particularly persons who are ill, older (>65 years) adults, and those at risk for severe COVID‐19
T138 11624-11674 Sentence denotes ○ Persons who are ill, call a health care provider
T139 11675-11742 Sentence denotes ○ Consider 2‐week supply of medications, food, and other essentials
T140 11743-11832 Sentence denotes ○ When out in public, keep social distance of at least 6 feet and wear a cloth face cover
T141 11833-11866 Sentence denotes ○ Avoid gatherings of >10 persons
T142 11867-11900 Sentence denotes ○ Work or attend school from home
T143 11901-11927 Sentence denotes ○ Avoid unnecessary travel
T144 11928-11994 Sentence denotes ○ Avoid visits to nursing homes or long‐term retirement facilities
T145 11995-12035 Sentence denotes Protect patients and health care workers
T146 12036-12136 Sentence denotes ○ Reduce facility risks: screen for COVID‐19 symptoms on entry; reduce visits; practice telemedicine
T147 12137-12187 Sentence denotes ○ Isolate symptomatic patients as soon as possible
T148 12188-12265 Sentence denotes ○ Protect health care personnel with recommended infection‐control procedures
T149 12266-12350 Sentence denotes Recommended testing in consultation with health care provider Hospitalized patients
T150 12351-12384 Sentence denotes Persons with symptoms of COVID‐19
T151 12385-12415 Sentence denotes ○ Health care facility workers
T152 12416-12455 Sentence denotes ○ Patients in long‐term care facilities
T153 12456-12483 Sentence denotes ○ Patients >65 years of age
T154 12484-12535 Sentence denotes ○ Patients with underlying conditions with symptoms
T155 12536-12554 Sentence denotes ○ First responders
T156 12555-12611 Sentence denotes Critical infrastructure workers and others with symptoms
T157 12612-12661 Sentence denotes Health care facility workers and first responders
T158 12662-12742 Sentence denotes Persons mildly ill in communities with high numbers of COVID‐19 hospitalizations
T159 12743-12867 Sentence denotes Good information resources Centers for Disease Control and Prevention: https://www.cdc.gov/coronavirus/2019-ncov/index.html
T160 12868-12958 Sentence denotes World Health Organization: https://www.who.int/emergencies/diseases/novel-coronavirus-2019
T161 12959-13063 Sentence denotes Infectious Disease Society of America: https://www.idsociety.org/public-health/COVID-19-Resource-Center/
T162 13064-13170 Sentence denotes American Association for the Study of Liver Diseases: https://www.aasld.org/about-aasld/covid-19-resources
T163 13171-13259 Sentence denotes European Association for the Study of the Liver: https://easl.eu/covid-19-and-the-liver/
T164 13260-13359 Sentence denotes European Centre for Disease Control and Prevention: https://www.ecdc.europa.eu/en/covid-19-pandemic
T165 13360-13440 Sentence denotes The Society for Healthcare Epidemiology of America: https://www.shea-online.org/
T166 13441-13588 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T167 13589-13771 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.
T168 13773-13780 Sentence denotes Summary
T169 13781-13904 Sentence denotes SARS‐CoV‐2 is a new human pathogen, readily spread via respiratory droplets and the cause of the growing COVID‐19 pandemic.
T170 13905-14013 Sentence denotes Men, older adults (>65 years old), and persons with comorbidities are at risk for severe COVID‐19 and death.
T171 14014-14212 Sentence denotes Countries have successfully suppressed transmission and mitigated needs for intensive care with robust case/contact detection (testing), isolation of infected/exposed persons, and social distancing.
T172 14213-14386 Sentence denotes To stop the COVID‐19 pandemic, the challenge is for all countries to scale up and sustain prevention measures while awaiting the arrival of effective vaccines and therapies.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 452-461 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 463-482 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T3 4227-4232 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 4237-4256 Phenotype denotes nonproductive cough http://purl.obolibrary.org/obo/HP_0031246
T5 4354-4361 Phenotype denotes anosmia http://purl.obolibrary.org/obo/HP_0000458
T6 4366-4373 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T7 4379-4392 Phenotype denotes loss of smell http://purl.obolibrary.org/obo/HP_0000458
T8 4494-4505 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T9 4696-4705 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 4895-4900 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T11 4911-4916 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T12 4951-4958 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T13 4969-4976 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T14 4977-4984 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T15 4995-5003 Phenotype denotes Headache http://purl.obolibrary.org/obo/HP_0002315
T16 5014-5029 Phenotype denotes Nausea/Vomiting http://purl.obolibrary.org/obo/HP_0002017
T17 5039-5047 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T18 5113-5124 Phenotype denotes Lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T19 5326-5346 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T20 6549-6558 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T21 6575-6582 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T22 7124-7131 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513
T23 7133-7145 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T24 7161-7183 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T25 7296-7309 Phenotype denotes liver disease http://purl.obolibrary.org/obo/HP_0001392
T26 7321-7330 Phenotype denotes cirrhosis http://purl.obolibrary.org/obo/HP_0001394
T27 8128-8135 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T28 8144-8156 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T29 8165-8182 Phenotype denotes Diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T30 8202-8224 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T31 8293-8306 Phenotype denotes liver disease http://purl.obolibrary.org/obo/HP_0001392
T32 11130-11136 Phenotype denotes Sneeze http://purl.obolibrary.org/obo/HP_0025095
T33 11140-11145 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T34 13102-13116 Phenotype denotes Liver Diseases http://purl.obolibrary.org/obo/HP_0001392