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PMC:7242012 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 4-12 Disease denotes COVID‐19 MESH:C000657245
3 170-199 Gene denotes angiotensin‐converting enzyme Gene:1636
5 79-87 Disease denotes COVID‐19 MESH:C000657245
7 258-282 Disease denotes coronavirus disease 2019 MESH:C000657245
9 428-454 Disease denotes acute respiratory syndrome MESH:D012120
32 723-740 Species denotes novel coronavirus Tax:2697049
33 742-751 Species denotes 2019‐nCoV Tax:2697049
34 822-831 Species denotes 2019‐nCoV Tax:2697049
35 837-850 Species denotes coronaviruses Tax:11118
36 980-1003 Species denotes human coronavirus, SARS Tax:694009
37 1004-1007 Species denotes CoV Tax:11118
38 1100-1110 Species denotes SARS‐CoV‐2 Tax:2697049
39 1218-1228 Species denotes SARS‐CoV‐2 Tax:2697049
40 1298-1308 Species denotes SARS‐CoV‐2 Tax:2697049
41 1772-1782 Species denotes SARS‐CoV‐2 Tax:2697049
42 1833-1841 Species denotes patients Tax:9606
43 567-576 Disease denotes pneumonia MESH:D011014
44 578-597 Disease denotes respiratory failure MESH:D012131
45 603-608 Disease denotes death MESH:D003643
46 1029-1055 Disease denotes acute respiratory syndrome MESH:D012120
47 1253-1277 Disease denotes coronavirus disease 2019 MESH:C000657245
48 1279-1287 Disease denotes COVID‐19 MESH:C000657245
49 1679-1687 Disease denotes COVID‐19 MESH:C000657245
50 1847-1855 Disease denotes COVID‐19 MESH:C000657245
51 1896-1916 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
52 1958-1966 Disease denotes COVID‐19 MESH:C000657245
53 2006-2014 Disease denotes COVID‐19 MESH:C000657245
55 2050-2058 Disease denotes COVID‐19 MESH:C000657245
67 2449-2456 Species denotes persons Tax:9606
68 2147-2155 Disease denotes COVID‐19 MESH:C000657245
69 2171-2177 Disease denotes deaths MESH:D003643
70 2299-2307 Disease denotes COVID‐19 MESH:C000657245
71 2318-2324 Disease denotes deaths MESH:D003643
72 2461-2469 Disease denotes COVID‐19 MESH:C000657245
73 2514-2522 Disease denotes COVID‐19 MESH:C000657245
74 2567-2575 Disease denotes COVID‐19 MESH:C000657245
75 2656-2662 Disease denotes deaths MESH:D003643
76 2760-2766 Disease denotes deaths MESH:D003643
77 2814-2822 Disease denotes COVID‐19 MESH:C000657245
87 2887-2897 Species denotes SARS‐CoV‐2 Tax:2697049
88 3105-3115 Species denotes SARS‐CoV‐2 Tax:2697049
89 3183-3193 Species denotes SARS‐CoV‐2 Tax:2697049
90 3321-3328 Species denotes persons Tax:9606
91 3527-3537 Species denotes SARS‐CoV‐2 Tax:2697049
92 2975-2983 Disease denotes infected MESH:D007239
93 3268-3276 Disease denotes infected MESH:D007239
94 3339-3347 Disease denotes COVID‐19 MESH:C000657245
95 3621-3641 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
106 3726-3757 Gene denotes angiotensin‐converting enzyme 2 Gene:59272
107 3759-3763 Gene denotes ACE2 Gene:59272
108 3861-3865 Gene denotes ACE2 Gene:59272
109 4082-4095 Gene denotes interleukin‐6 Gene:3569
110 4097-4101 Gene denotes IL‐6 Gene:3569
111 3696-3704 Species denotes SARS‐CoV Tax:694009
112 3706-3716 Species denotes SARS‐CoV‐2 Tax:2697049
113 3957-3967 Species denotes SARS‐CoV‐2 Tax:2697049
114 3935-3943 Disease denotes COVID‐19 MESH:C000657245
115 4000-4005 Disease denotes death MESH:D003643
128 4686-4694 Species denotes patients Tax:9606
129 4205-4214 Disease denotes infection MESH:D007239
130 4227-4235 Disease denotes COVID‐19 MESH:C000657245
131 4329-4337 Disease denotes COVID‐19 MESH:C000657245
132 4342-4347 Disease denotes fever MESH:D005334
133 4366-4371 Disease denotes cough MESH:D003371
134 4469-4476 Disease denotes anosmia MESH:D000857
135 4481-4488 Disease denotes ageusia MESH:D000370
136 4522-4530 Disease denotes COVID‐19 MESH:C000657245
137 4609-4620 Disease denotes lymphopenia MESH:D008231
138 4700-4708 Disease denotes COVID‐19 MESH:C000657245
139 4805-4820 Disease denotes viral pneumonia
153 5260-5278 Gene denotes C‐reactive protein Gene:1401
154 4977-4985 Species denotes patients Tax:9606
155 5010-5015 Disease denotes Fever MESH:D005334
156 5026-5031 Disease denotes Cough MESH:D003371
157 5066-5077 Disease denotes Dyspnea 19 MESH:C000657245
158 5084-5091 Disease denotes Fatigue MESH:D005221
159 5092-5099 Disease denotes Myalgia MESH:D063806
160 5110-5118 Disease denotes Headache MESH:D006261
161 5129-5135 Disease denotes Nausea MESH:D009325
162 5154-5162 Disease denotes Diarrhea MESH:D003967
163 5228-5239 Disease denotes Lymphopenia MESH:D008231
164 5435-5470 Disease denotes Acute respiratory distress syndrome MESH:D012128
165 5480-5489 Disease denotes Mortality MESH:D003643
167 4852-4860 Disease denotes COVID‐19 MESH:C000657245
172 6246-6256 Species denotes SARS‐CoV‐2 Tax:2697049
173 5981-5989 Disease denotes COVID‐19 MESH:C000657245
174 6161-6169 Disease denotes COVID‐19 MESH:C000657245
175 6532-6540 Disease denotes COVID‐19 MESH:C000657245
181 6552-6560 Disease denotes COVID‐19 MESH:C000657245
182 6609-6617 Disease denotes COVID‐19 MESH:C000657245
183 6664-6673 Disease denotes pneumonia MESH:D011014
184 6690-6697 Disease denotes dyspnea MESH:D004417
185 6727-6744 Disease denotes pulmonary disease MESH:D008171
207 6909-6912 Species denotes men Tax:9606
208 6932-6940 Species denotes patients Tax:9606
209 7041-7047 Species denotes people Tax:9606
210 7100-7107 Species denotes persons Tax:9606
211 7180-7188 Species denotes patients Tax:9606
212 6877-6885 Disease denotes COVID‐19 MESH:C000657245
213 7007-7015 Disease denotes COVID‐19 MESH:C000657245
214 7024-7030 Disease denotes deaths MESH:D003643
215 7078-7084 Disease denotes Deaths MESH:D003643
216 7194-7202 Disease denotes COVID‐19 MESH:C000657245
217 7239-7246 Disease denotes obesity MESH:D009765
218 7248-7260 Disease denotes hypertension MESH:D006973
219 7262-7270 Disease denotes diabetes MESH:D003920
220 7276-7298 Disease denotes cardiovascular disease MESH:D002318
221 7393-7401 Disease denotes COVID‐19 MESH:C000657245
222 7411-7424 Disease denotes liver disease MESH:D008107
223 7436-7445 Disease denotes cirrhosis MESH:D005355
224 7669-7677 Disease denotes COVID‐19 MESH:C000657245
225 7761-7766 Disease denotes COVID MESH:C000657245
226 7767-7776 Disease denotes mortality MESH:D003643
227 7813-7821 Disease denotes COVID‐19 MESH:C000657245
235 8169-8177 Species denotes Patients Tax:9606
236 8259-8271 Disease denotes Hypertension MESH:D006973
237 8280-8297 Disease denotes Diabetes mellitus MESH:D003920
238 8317-8339 Disease denotes Cardiovascular disease MESH:D002318
239 8359-8380 Disease denotes Chronic renal disease MESH:D051436
240 8408-8421 Disease denotes liver disease MESH:D008107
241 8472-8481 Disease denotes Mortality MESH:D003643
244 8022-8029 Species denotes Persons Tax:9606
245 8035-8043 Disease denotes COVID‐19 MESH:C000657245
253 9393-9397 Gene denotes IL‐6 Gene:3569
254 9260-9270 Chemical denotes remdesivir MESH:C000606551
255 9539-9557 Chemical denotes hydroxychloroquine MESH:D006886
256 9561-9572 Chemical denotes chloroquine MESH:D002738
257 9342-9350 Disease denotes COVID‐19 MESH:C000657245
258 9475-9493 Disease denotes cardiac arrythmias MESH:D001145
259 9590-9598 Disease denotes COVID‐19 MESH:C000657245
266 9899-9907 Species denotes patients Tax:9606
267 10847-10857 Species denotes SARS‐CoV‐2 Tax:2697049
268 9913-9921 Disease denotes COVID‐19 MESH:C000657245
269 10458-10466 Disease denotes COVID‐19 MESH:C000657245
270 10682-10688 Disease denotes deaths MESH:D003643
271 10743-10751 Disease denotes COVID‐19 MESH:C000657245
296 11654-11661 Species denotes persons Tax:9606
297 11741-11748 Species denotes Persons Tax:9606
298 12118-12126 Species denotes patients Tax:9606
299 12274-12282 Species denotes patients Tax:9606
300 12457-12465 Species denotes patients Tax:9606
301 12466-12473 Species denotes Persons Tax:9606
302 12950-12971 Species denotes coronavirus/2019-ncov Tax:2697049
303 11153-11158 Chemical denotes water MESH:D014867
304 11359-11364 Chemical denotes water MESH:D014867
305 11502-11507 Chemical denotes water MESH:D014867
306 11072-11080 Disease denotes COVID‐19 MESH:C000657245
307 11255-11260 Disease denotes cough MESH:D003371
308 11566-11574 Disease denotes COVID‐19 MESH:C000657245
309 11730-11735 Disease denotes COVID MESH:C000657245
310 12187-12195 Disease denotes COVID‐19 MESH:C000657245
311 12352-12361 Disease denotes infection MESH:D007239
312 12491-12499 Disease denotes COVID‐19 MESH:C000657245
313 12832-12840 Disease denotes COVID‐19 MESH:C000657245
314 13057-13092 Disease denotes coronavirus-2019 Infectious Disease MESH:C000657245
315 13153-13161 Disease denotes COVID-19 MESH:C000657245
316 13217-13231 Disease denotes Liver Diseases MESH:D008107
317 13267-13275 Disease denotes covid-19 MESH:C000657245
318 13351-13359 Disease denotes covid-19 MESH:C000657245
319 13457-13465 Disease denotes covid-19 MESH:C000657245
321 10962-10970 Disease denotes COVID‐19 MESH:C000657245
332 13896-13906 Species denotes SARS‐CoV‐2 Tax:2697049
333 13916-13921 Species denotes human Tax:9606
334 14020-14023 Species denotes Men Tax:9606
335 14059-14066 Species denotes persons Tax:9606
336 14296-14303 Species denotes persons Tax:9606
337 14001-14009 Disease denotes COVID‐19 MESH:C000657245
338 14109-14117 Disease denotes COVID‐19 MESH:C000657245
339 14122-14127 Disease denotes death MESH:D003643
340 14279-14287 Disease denotes infected MESH:D007239
341 14340-14348 Disease denotes COVID‐19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 347-360 Body_part denotes interleukin‐6 http://purl.org/sig/ont/fma/fma264829
T2 347-358 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T3 3046-3050 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T4 3806-3831 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T5 3826-3831 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T6 3850-3855 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T7 3883-3888 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T8 3890-3912 Body_part denotes gastrointestinal tract http://purl.org/sig/ont/fma/fma71132
T9 3918-3925 Body_part denotes kidneys http://purl.org/sig/ont/fma/fma7203
T10 3995-3999 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T11 4065-4074 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T12 4082-4095 Body_part denotes interleukin‐6 http://purl.org/sig/ont/fma/fma264829
T13 4082-4093 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T14 4115-4123 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T15 4592-4601 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T16 4646-4653 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T17 4753-4758 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T18 5191-5201 Body_part denotes Leukocytes http://purl.org/sig/ont/fma/fma62852
T19 5271-5278 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 5289-5296 Body_part denotes Alanine http://purl.org/sig/ont/fma/fma82749
T21 5369-5374 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 6067-6075 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T23 6112-6118 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T24 6257-6260 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T25 6265-6268 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T26 6517-6521 Body_part denotes sole http://purl.org/sig/ont/fma/fma25000
T27 7411-7416 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T28 8408-8413 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T29 9299-9309 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T30 9414-9428 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871
T31 11201-11205 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T32 11207-11211 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T33 11217-11222 Body_part denotes mouth http://purl.org/sig/ont/fma/fma49184
T34 11268-11274 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T35 11292-11297 Body_part denotes elbow http://purl.org/sig/ont/fma/fma24901
T36 11937-11941 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T37 13217-13222 Body_part denotes Liver http://purl.org/sig/ont/fma/fma7197
T38 13328-13333 Body_part denotes Liver http://purl.org/sig/ont/fma/fma7197
T39 13368-13373 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3046-3050 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T2 3883-3888 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T3 4115-4129 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T4 4753-4758 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 5369-5374 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 6112-6118 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T7 7411-7416 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T8 8408-8413 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T9 10489-10494 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T10 11111-11116 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T11 11207-11211 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T12 11217-11222 Body_part denotes mouth http://purl.obolibrary.org/obo/UBERON_0000165
T13 11237-11242 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T14 11268-11274 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T15 11292-11297 Body_part denotes elbow http://purl.obolibrary.org/obo/UBERON_0001461
T16 11915-11919 Body_part denotes feet http://purl.obolibrary.org/obo/UBERON_0002387
T17 11937-11941 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T18 13217-13222 Body_part denotes Liver http://purl.obolibrary.org/obo/UBERON_0002107
T19 13328-13333 Body_part denotes Liver http://purl.obolibrary.org/obo/UBERON_0002107
T20 13368-13373 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T21 14397-14402 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 4-12 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 79-87 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 249-257 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 258-282 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T5 416-420 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T6 421-454 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 567-576 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 578-597 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T9 999-1003 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 1022-1055 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T11 1057-1061 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 1100-1104 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 1218-1222 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 1253-1277 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T15 1279-1287 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 1298-1302 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 1679-1687 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 1772-1776 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 1847-1855 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 1896-1900 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 1907-1916 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 1958-1966 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 2006-2014 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 2050-2058 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 2147-2155 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 2299-2307 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 2461-2469 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 2514-2522 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 2567-2575 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 2814-2822 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 2887-2891 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 3105-3109 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 3183-3187 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 3204-3214 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T35 3339-3347 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 3527-3531 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 3621-3625 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 3632-3641 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 3696-3700 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 3706-3710 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 3935-3943 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 3957-3961 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 4205-4214 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T44 4227-4235 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 4329-4337 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 4469-4476 Disease denotes anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T47 4522-4530 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 4609-4620 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T49 4700-4708 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 4805-4820 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T51 4811-4820 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T52 4852-4860 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 5154-5162 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T54 5228-5239 Disease denotes Lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T55 5435-5470 Disease denotes Acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T56 5441-5470 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T57 5684-5692 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 5981-5989 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 6161-6169 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 6246-6250 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 6532-6540 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 6552-6560 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T63 6609-6617 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 6664-6673 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T65 6727-6744 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T66 6767-6771 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T67 6877-6885 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 7007-7015 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 7194-7202 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 7239-7246 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T71 7248-7260 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T72 7262-7270 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T73 7276-7298 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T74 7393-7401 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 7411-7424 Disease denotes liver disease http://purl.obolibrary.org/obo/MONDO_0005154
T76 7436-7445 Disease denotes cirrhosis http://purl.obolibrary.org/obo/MONDO_0005155
T77 7669-7677 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T78 7813-7821 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 8035-8043 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 8243-8250 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T81 8259-8271 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T82 8280-8297 Disease denotes Diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T83 8317-8339 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T84 8359-8380 Disease denotes Chronic renal disease http://purl.obolibrary.org/obo/MONDO_0024327
T85 8367-8380 Disease denotes renal disease http://purl.obolibrary.org/obo/MONDO_0002118|http://purl.obolibrary.org/obo/MONDO_0005240
T87 8408-8421 Disease denotes liver disease http://purl.obolibrary.org/obo/MONDO_0005154
T88 8737-8745 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T89 9342-9350 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T90 9590-9598 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T91 9913-9921 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T92 10458-10466 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T93 10743-10751 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T94 10847-10851 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T95 10962-10970 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 11072-11080 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T97 11566-11574 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 11730-11738 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 12187-12195 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 12352-12361 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T101 12491-12499 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 12832-12840 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 13074-13084 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T104 13153-13161 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T105 13661-13669 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 13896-13900 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 14001-14009 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T108 14109-14117 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T109 14340-14348 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 106-109 http://purl.obolibrary.org/obo/CLO_0002742 denotes Del
T2 202-205 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T3 347-360 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin‐6
T4 472-484 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T5 544-546 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T6 633-634 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 640-646 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T8 721-722 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 854-858 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T10 917-923 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T11 980-985 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T12 1064-1070 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 , 4
T13 1117-1123 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T14 1171-1183 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T15 1212-1217 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 1459-1460 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1461-1463 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T18 1593-1594 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1654-1656 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T20 1688-1689 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2092-2094 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 2533-2539 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T23 2585-2588 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 2703-2706 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 2774-2780 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T26 3046-3050 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T27 3083-3090 http://purl.obolibrary.org/obo/BFO_0000030 denotes objects
T28 3494-3500 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T29 3815-3825 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T30 3826-3831 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T31 3850-3855 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T32 3883-3888 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T33 3883-3888 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T34 3883-3888 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T35 3883-3888 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T36 3890-3912 http://purl.obolibrary.org/obo/UBERON_0005409 denotes gastrointestinal tract
T37 3918-3925 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidneys
T38 3918-3925 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidneys
T39 3918-3925 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidneys
T40 3995-3999 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T41 4038-4039 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 4082-4095 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin‐6
T43 4276-4280 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1‐14
T44 4293-4299 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T45 4449-4452 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T46 4583-4584 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 4714-4715 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 4753-4758 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T49 5057-5059 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T50 5080-5082 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T51 5219-5221 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T52 5369-5374 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T53 6001-6005 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T54 6007-6013 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T55 6049-6056 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T56 6201-6208 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T57 6210-6216 http://purl.obolibrary.org/obo/CLO_0050509 denotes 2 , 7
T58 6230-6235 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T59 6315-6319 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T60 6451-6456 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T61 6573-6574 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 6803-6804 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 7074-7076 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T64 7136-7138 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T65 7304-7306 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T66 7342-7345 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T67 7349-7350 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 7411-7416 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T69 7411-7416 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T70 7447-7450 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T71 7460-7461 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 8224-8226 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T73 8229-8231 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T74 8313-8315 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T75 8355-8357 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T76 8408-8413 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T77 8408-8413 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T78 8423-8428 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1% 1
T79 8457-8462 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3% 6
T80 8552-8555 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T81 8629-8631 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T82 9002-9003 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 9028-9029 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 9272-9273 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 9600-9601 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 9698-9700 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T87 9739-9740 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 9776-9777 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 10086-10093 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T90 10501-10508 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T91 10587-10594 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T92 10766-10773 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T93 10997-11004 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing
T94 11201-11205 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T95 11207-11211 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T96 11217-11222 http://www.ebi.ac.uk/efo/EFO_0000825 denotes mouth
T97 11266-11267 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 11762-11768 http://purl.obolibrary.org/obo/PR_000001898 denotes call a
T99 11929-11930 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 11937-11941 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T101 12393-12400 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T102 12996-13008 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T103 13217-13222 http://purl.obolibrary.org/obo/UBERON_0002107 denotes Liver
T104 13217-13222 http://www.ebi.ac.uk/efo/EFO_0000887 denotes Liver
T105 13328-13333 http://purl.obolibrary.org/obo/UBERON_0002107 denotes Liver
T106 13328-13333 http://www.ebi.ac.uk/efo/EFO_0000887 denotes Liver
T107 13368-13373 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T108 13368-13373 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T109 13454-13456 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T110 13910-13911 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 13916-13921 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T112 14256-14263 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 170-181 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T2 342-344 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T4 3726-3737 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T5 4097-4099 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T7 4646-4653 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T8 5271-5278 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 5289-5296 Chemical denotes Alanine http://purl.obolibrary.org/obo/CHEBI_16449
T10 9260-9270 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T11 9289-9298 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T12 9299-9309 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T13 9310-9317 Chemical denotes prodrug http://purl.obolibrary.org/obo/CHEBI_50266
T14 9393-9395 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T16 9539-9557 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T17 9561-9572 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T18 11153-11158 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T19 11166-11173 Chemical denotes alcohol http://purl.obolibrary.org/obo/CHEBI_16236|http://purl.obolibrary.org/obo/CHEBI_30879
T21 11359-11364 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T22 11422-11435 Chemical denotes disinfectants http://purl.obolibrary.org/obo/CHEBI_48219
T23 11446-11454 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T24 11502-11507 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T25 13454-13456 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 368-389 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 376-389 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 3789-3800 http://purl.obolibrary.org/obo/GO_0006897 denotes endocytosis
T4 3995-4005 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T5 4013-4022 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T6 4013-4022 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T7 4512-4517 http://purl.obolibrary.org/obo/GO_0050909 denotes taste
T8 5917-5938 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T9 5925-5938 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-22 Sentence denotes The COVID‐19 Pandemic:
T2 23-74 Sentence denotes An Epidemiologic, Public Health, and Clinical Brief
T3 75-96 Sentence denotes The COVID‐19 Pandemic
T4 97-113 Sentence denotes Ward and Del Rio
T5 115-150 Sentence denotes Watch the interview with the author
T6 151-164 Sentence denotes Abbreviations
T7 165-201 Sentence denotes ACE2 angiotensin‐converting enzyme 2
T8 202-248 Sentence denotes CDC Centers for Disease Control and Prevention
T9 249-282 Sentence denotes COVID‐19 coronavirus disease 2019
T10 283-305 Sentence denotes CT computed tomography
T11 306-341 Sentence denotes FDA US Food and Drug Administration
T12 342-360 Sentence denotes IL‐6 interleukin‐6
T13 361-415 Sentence denotes RT‐PCR reverse transcription polymerase chain reaction
T14 416-454 Sentence denotes SARS severe acute respiratory syndrome
T15 455-484 Sentence denotes WHO World Health Organization
T16 485-663 Sentence denotes On December 29, 2019, health authorities in China reported 27 cases of an unusual pneumonia, respiratory failure, and death linked to attendance at a live animal market in Wuhan.
T17 664-776 Sentence denotes 1 , 2 On January 7, 2020, Chinese scientists confirmed a novel coronavirus, 2019‐nCoV, as the causative agent.
T18 777-1063 Sentence denotes 3 Studies revealed >80% genetic homology of 2019‐nCoV with coronaviruses of bats, presumably the original host; pangolins, suggesting this animal sold at the market as an intermediate host; and another human coronavirus, SARS‐CoV, the cause of severe acute respiratory syndrome (SARS).
T19 1064-1150 Sentence denotes 3 , 4 All evidence indicates that SARS‐CoV‐2 is of animal and not laboratory origin.
T20 1151-1289 Sentence denotes 5 The World Health Organization (WHO) later named the novel virus SARS‐CoV‐2 and the related disease coronavirus disease 2019 (COVID‐19).
T21 1290-1382 Sentence denotes 2 , 3 SARS‐CoV‐2 spread quickly through communities in China and other countries (Fig. 1).
T22 1383-1537 Sentence denotes On January 20, 2020, the first case was recognized in the United State when a 35‐year‐old man presented to an urgent care clinic in Snohomish, Washington.
T23 1538-1644 Sentence denotes 6 , 7 On January 30, 2020, WHO declared the outbreak a Public Health Emergency of International Concern.
T24 1645-1699 Sentence denotes On March 11, 2020, WHO designated COVID‐19 a pandemic.
T25 1700-1856 Sentence denotes Almost all countries are implementing public health measures to prevent SARS‐CoV‐2 transmission and are marshaling clinical care for patients with COVID‐19.
T26 1857-2024 Sentence denotes This review highlights key features of SARS‐CoV‐2 infection, the epidemiology and clinical course of COVID‐19, and interventions to stop the growing COVID‐19 pandemic.
T27 2025-2068 Sentence denotes Fig 1 Chronology of the COVID‐19 pandemic.
T28 2070-2082 Sentence denotes Epidemiology
T29 2083-2178 Sentence denotes By March 11, 2020, 105 countries had reported 118,319 confirmed COVID‐19 cases and 4292 deaths.
T30 2179-2253 Sentence denotes 2 Outside China, large epidemics emerged in South Korea, Iran, and Italy.
T31 2254-2340 Sentence denotes By March 14, 2020, approximately one in four COVID‐19 cases and deaths were in Europe.
T32 2341-2408 Sentence denotes The US epidemic accelerated, with cases doubling every 6 to 7 days.
T33 2409-2532 Sentence denotes 7 By March 29, 2020, more than 100,000 persons had COVID‐19 in the United States, the largest burden of COVID‐19 globally.
T34 2533-2680 Sentence denotes 2 , 7 As of April 29, 2020, the COVID‐19 pandemic has grown to more than 3 million confirmed cases and more than 206,000 deaths in 179 countries.
T35 2681-2773 Sentence denotes The United States now has more than 1 million cases (33%) and more than 50,000 deaths (25%).
T36 2774-2886 Sentence denotes 2 , 7 The potential is high for large COVID‐19 epidemics in Brazil, Russia, India, and many African countries.
T37 2887-3091 Sentence denotes SARS‐CoV‐2 is transmitted directly through inhalation or mucosal surface exposure to an infected person’s respiratory droplets or indirectly when touching the face after contact with contaminated objects.
T38 3092-3179 Sentence denotes 2 , 4 , 7 SARS‐CoV‐2 can remain viable on environmental surfaces for up to 72 hours.
T39 3180-3329 Sentence denotes 8 SARS‐CoV‐2 is highly infectious with an R0 of approximately 2.2 to 3.0, meaning each infected person will infect about two to three other persons.
T40 3330-3584 Sentence denotes 7 Large COVID‐19 outbreaks have occurred in health care facilities, households, cruise ships, religious services (e.g., funerals), and other large gatherings 1 , 2 , 7 Individuals can transmit SARS‐CoV‐2 before, during, and after symptomatic disease.
T41 3585-3659 Sentence denotes As many as half of individuals with SARS‐CoV‐2 infection have no symptoms.
T42 3660-3661 Sentence denotes 7
T43 3663-3684 Sentence denotes Clinical Presentation
T44 3685-3926 Sentence denotes Similar to SARS‐CoV, SARS‐CoV‐2 binds to angiotensin‐converting enzyme 2 (ACE2) receptors for entry via endocytosis into alveolar epithelial cells, as well as other cells with ACE2 receptors in the heart, gastrointestinal tract, and kidneys.
T45 3927-4175 Sentence denotes 2 , 4 COVID‐19 results from SARS‐CoV‐2 replication, causing early cell death (i.e., apoptosis) and provoking a storm of proinflammatory cytokines (e.g., interleukin‐6 [IL‐6]) disrupting alveolar walls with resulting fluid accumulation in alveoli.
T46 4176-4177 Sentence denotes 4
T47 4178-4287 Sentence denotes The incubation period from infection to onset of COVID‐19 disease is typically 5 to 7 days (range 1‐14 days).
T48 4288-4382 Sentence denotes 1 , 2 , 7 The most common symptoms of COVID‐19 are fever and nonproductive cough (Table 1).
T49 4383-4540 Sentence denotes 1 , 4 , 7 , 9 The Centers for Disease Control and Prevention (CDC) recently added anosmia and ageusia, the loss of smell and taste, as COVID‐19 symptoms.
T50 4541-4654 Sentence denotes 7 Laboratory findings are remarkable for a normal leukocyte count, lymphopenia, and elevated C‐reactive protein.
T51 4655-4821 Sentence denotes 1 , 6 , 8 Most hospitalized patients with COVID‐19 have a bilateral ground‐glass appearance on chest computed tomography (CT) scan consistent with viral pneumonia.
T52 4822-4907 Sentence denotes Table 1 Clinical Features of COVID‐19 in Wuhan and Multiple Other Locations in China
T53 4908-4966 Sentence denotes Clinical Features Wuhan, China Multiple Locations, China
T54 4967-5000 Sentence denotes Number of patients 10,999 3,062
T55 5001-5009 Sentence denotes Symptoms
T56 5010-5025 Sentence denotes Fever 89% 80%
T57 5026-5041 Sentence denotes Cough 68% 63%
T58 5042-5065 Sentence denotes Expectoration 34% 42%
T59 5066-5083 Sentence denotes Dyspnea 19% 34%
T60 5084-5109 Sentence denotes Fatigue/Myalgia 38% 46%
T61 5110-5128 Sentence denotes Headache 14% 15%
T62 5129-5153 Sentence denotes Nausea/Vomiting 5% 10%
T63 5154-5171 Sentence denotes Diarrhea 4% 13%
T64 5172-5190 Sentence denotes Laboratory results
T65 5191-5227 Sentence denotes Leukocytes in normal range 94% 70%
T66 5228-5249 Sentence denotes Lymphopenia 83% 57%
T67 5250-5288 Sentence denotes Increased C‐reactive protein 61% 74%
T68 5289-5351 Sentence denotes Alanine aminotransferase above upper limit of normal 21% 29%
T69 5352-5359 Sentence denotes Imaging
T70 5360-5387 Sentence denotes Abnormal chest CT 86% 89%
T71 5388-5434 Sentence denotes Bilateral infiltrates (ground glass) 56% 76%
T72 5435-5479 Sentence denotes Acute respiratory distress syndrome 6% 20%
T73 5480-5499 Sentence denotes Mortality 1.4% 6%
T74 5500-5525 Sentence denotes Data are from Guna et al.
T75 5526-5576 Sentence denotes 1 and Centers for Disease Control and Prevention.
T76 5577-5578 Sentence denotes 7
T77 5579-5726 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T78 5727-5909 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.
T79 5910-6006 Sentence denotes Today, reverse transcription polymerase chain reaction (RT‐PCR) is the COVID‐19 diagnostic test.
T80 6007-6156 Sentence denotes 2 , 7 RT‐PCR sensitivity is highest for testing bronchial alveolar lavage fluid (93%) and declines for sputum (72%) and nasal swab (63%) specimens.
T81 6157-6209 Sentence denotes 10 COVID‐19 diagnosis might require repeat testing.
T82 6210-6294 Sentence denotes 2 , 7 Serological tests to detect SARS‐CoV‐2 IgM and IgG antibodies are available.
T83 6295-6551 Sentence denotes However, because of test sensitivity and other quality concerns, the US Food and Drug Administration (FDA; https://www.fda.gov) advises current serological tests are best used for surveillance and research, and not as the sole basis for COVID‐19 diagnosis.
T84 6552-6588 Sentence denotes COVID‐19 is commonly a mild disease.
T85 6589-6772 Sentence denotes Of the first 72,314 COVID‐19 disease reported in China, 81% had no or mild pneumonia, 21% had severe dyspnea and radiological evidence of pulmonary disease, and 5% progressed to SARS.
T86 6773-6856 Sentence denotes 1 Individuals can be ill for a week or longer before experiencing severe symptoms.
T87 6857-6968 Sentence denotes The risk for severe COVID‐19 disease is highest for men, older adults, and patients with certain comorbidities.
T88 6969-7063 Sentence denotes In the United States, 80% of reported COVID‐19–related deaths are among people aged ≥65 years.
T89 7064-7125 Sentence denotes 7 , 9 , 11 Deaths are rare among persons <24 years of age.
T90 7126-7318 Sentence denotes 1 , 7 , 11 In the United States, most hospitalized patients with COVID‐19 have comorbid conditions, including obesity, hypertension, diabetes, and cardiovascular disease 7 , 11 (Table 2).
T91 7319-7544 Sentence denotes Although listed by the CDC as a comorbid condition associated with severe COVID‐19, chronic liver disease, including cirrhosis, has not been a common comorbidity associated with hospitalization in the United States (Table 2).
T92 7545-7686 Sentence denotes The high prevalence of comorbid conditions can explain, in part, African Americans’ increased risk for hospitalization with COVID‐19 disease.
T93 7687-7777 Sentence denotes 5 Variable comorbidity prevalence contributes to differences in national COVID mortality.
T94 7778-7985 Sentence denotes Globally, crude fatality rates for COVID‐19 range from 0.2% in Singapore, to 2.0% to 3.0% in South Korea and Germany, to 4.3% for the United States, and to 10% to 13% in Spain, Italy, and the United Kingdom.
T95 7986-7992 Sentence denotes 2 , 5
T96 7993-8066 Sentence denotes Table 2 Comorbidities Among Persons With COVID‐19 Disease, United States
T97 8067-8107 Sentence denotes Condition United States* New York City
T98 8108-8168 Sentence denotes Not Hospitalized Hospitalized Intensive Care Hospitalized
T99 8169-8200 Sentence denotes Patients 5143 1037 457 5700
T100 8201-8242 Sentence denotes One or more condition 27% 71% 78% 88%
T101 8243-8258 Sentence denotes Obesity 42%
T102 8259-8279 Sentence denotes Hypertension 57%
T103 8280-8316 Sentence denotes Diabetes mellitus 6% 24% 32% 34%
T104 8317-8358 Sentence denotes Cardiovascular disease 5% 23% 29% 18%
T105 8359-8399 Sentence denotes Chronic renal disease 1% 9% 12% 0.6%
T106 8400-8437 Sentence denotes Chronic liver disease 1% 1% 2% 9%
T107 8438-8471 Sentence denotes Immunocompromised 3% 6% 9% 2%
T108 8472-8489 Sentence denotes Mortality 21%
T109 8490-8503 Sentence denotes Total 21%
T110 8504-8525 Sentence denotes 1 Comorbidity 88%
T111 8526-8590 Sentence denotes * Based on data from the CDC for all 50 states and territories.
T112 8591-8628 Sentence denotes Otherwise, data are Richardson et al.
T113 8629-8631 Sentence denotes 11
T114 8632-8779 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T115 8780-8962 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.
T116 8963-9196 Sentence denotes The search for effective therapies and a vaccine is occurring at a remarkable pace, with at least 29 studies of therapeutic agents and 5 studies of candidate vaccines registered on ClinicalTrials.org (https://www.clinicaltrials.gov).
T117 9197-9351 Sentence denotes On May 1, 2020, the FDA granted Emergency Use Authorization of remdesivir, a broad‐spectrum antiviral nucleotide prodrug for treatment of severe COVID‐19.
T118 9352-9445 Sentence denotes Studies of monoclonal antibodies against IL‐6 and hyperimmune immunoglobulin are in progress.
T119 9446-9599 Sentence denotes Following reports of serious cardiac arrythmias, the FDA cautioned clinicians of prescribing hydroxychloroquine or chloroquine for treatment of COVID‐19.
T120 9600-9708 Sentence denotes A safe and effective vaccine, if successfully developed, probably will not be available for 12 to 18 months.
T121 9710-9720 Sentence denotes Prevention
T122 9721-9984 Sentence denotes In the absence of a vaccine, prevention is composed of a combination of nonpharmacological interventions for suppression of transmission to R0 <1 and mitigation of the number of patients with COVID‐19 who require intensive care and mechanical respiratory support.
T123 9985-10218 Sentence denotes 12 Interventions include improved personal hygiene promotions, symptomatic screening and laboratory testing for case detection, contact tracing, household quarantine of those with transmission risks, and social distancing (Table 3).
T124 10219-10400 Sentence denotes The United States and most other countries have implemented extensive travel restrictions, workplace and school closures, and cancellation of sporting and other large public events.
T125 10401-10542 Sentence denotes China, South Korea, and Taiwan successfully curbed large COVID‐19 epidemics with prompt scale‐up of testing, contact tracing, and quarantine.
T126 10543-10689 Sentence denotes 2 , 4 , 7 In the United States, although testing rates are low, models suggest prevention measures are reducing transmission and future deaths.
T127 10690-10909 Sentence denotes 13 The US government recently recommended increased COVID‐19 surveillance, testing, and contact tracing with modified social distancing measures to sustain SARS‐CoV‐2 prevention while opening up education and commerce.
T128 10910-10912 Sentence denotes 14
T129 10913-11031 Sentence denotes Table 3 Prevention Measures to Reduce Risks for COVID‐19, Priority Populations for Testing, and Information Resources
T130 11032-11103 Sentence denotes Prevention measures to reduce risks for COVID‐19 Practice good hygiene
T131 11104-11183 Sentence denotes ○ Wash hands often for >20 seconds with soap and water or 60% alcohol sanitizer
T132 11184-11242 Sentence denotes ○ Avoid touching eyes, nose, and mouth with unwashed hands
T133 11243-11297 Sentence denotes ○ Sneeze or cough into a tissue or inside of the elbow
T134 11298-11508 Sentence denotes ○ Disinfect surfaces and used items frequently with soap and water and Environmental Protection Agency–registered household disinfectants or bleach solution (4 teaspoons [20 mL] bleach per quart [or 1 L] water)
T135 11509-11535 Sentence denotes Limit close social contact
T136 11536-11607 Sentence denotes ○ Learn signs and symptoms of COVID‐19, and follow local disease trends
T137 11608-11738 Sentence denotes ○ Stay home as much as possible, particularly persons who are ill, older (>65 years) adults, and those at risk for severe COVID‐19
T138 11739-11789 Sentence denotes ○ Persons who are ill, call a health care provider
T139 11790-11857 Sentence denotes ○ Consider 2‐week supply of medications, food, and other essentials
T140 11858-11947 Sentence denotes ○ When out in public, keep social distance of at least 6 feet and wear a cloth face cover
T141 11948-11981 Sentence denotes ○ Avoid gatherings of >10 persons
T142 11982-12015 Sentence denotes ○ Work or attend school from home
T143 12016-12042 Sentence denotes ○ Avoid unnecessary travel
T144 12043-12109 Sentence denotes ○ Avoid visits to nursing homes or long‐term retirement facilities
T145 12110-12150 Sentence denotes Protect patients and health care workers
T146 12151-12251 Sentence denotes ○ Reduce facility risks: screen for COVID‐19 symptoms on entry; reduce visits; practice telemedicine
T147 12252-12302 Sentence denotes ○ Isolate symptomatic patients as soon as possible
T148 12303-12380 Sentence denotes ○ Protect health care personnel with recommended infection‐control procedures
T149 12381-12465 Sentence denotes Recommended testing in consultation with health care provider Hospitalized patients
T150 12466-12499 Sentence denotes Persons with symptoms of COVID‐19
T151 12500-12530 Sentence denotes ○ Health care facility workers
T152 12531-12570 Sentence denotes ○ Patients in long‐term care facilities
T153 12571-12598 Sentence denotes ○ Patients >65 years of age
T154 12599-12650 Sentence denotes ○ Patients with underlying conditions with symptoms
T155 12651-12669 Sentence denotes ○ First responders
T156 12670-12726 Sentence denotes Critical infrastructure workers and others with symptoms
T157 12727-12776 Sentence denotes Health care facility workers and first responders
T158 12777-12857 Sentence denotes Persons mildly ill in communities with high numbers of COVID‐19 hospitalizations
T159 12858-12982 Sentence denotes Good information resources Centers for Disease Control and Prevention: https://www.cdc.gov/coronavirus/2019-ncov/index.html
T160 12983-13073 Sentence denotes World Health Organization: https://www.who.int/emergencies/diseases/novel-coronavirus-2019
T161 13074-13178 Sentence denotes Infectious Disease Society of America: https://www.idsociety.org/public-health/COVID-19-Resource-Center/
T162 13179-13285 Sentence denotes American Association for the Study of Liver Diseases: https://www.aasld.org/about-aasld/covid-19-resources
T163 13286-13374 Sentence denotes European Association for the Study of the Liver: https://easl.eu/covid-19-and-the-liver/
T164 13375-13474 Sentence denotes European Centre for Disease Control and Prevention: https://www.ecdc.europa.eu/en/covid-19-pandemic
T165 13475-13555 Sentence denotes The Society for Healthcare Epidemiology of America: https://www.shea-online.org/
T166 13556-13703 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T167 13704-13886 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.
T168 13888-13895 Sentence denotes Summary
T169 13896-14019 Sentence denotes SARS‐CoV‐2 is a new human pathogen, readily spread via respiratory droplets and the cause of the growing COVID‐19 pandemic.
T170 14020-14128 Sentence denotes Men, older adults (>65 years old), and persons with comorbidities are at risk for severe COVID‐19 and death.
T171 14129-14327 Sentence denotes Countries have successfully suppressed transmission and mitigated needs for intensive care with robust case/contact detection (testing), isolation of infected/exposed persons, and social distancing.
T172 14328-14501 Sentence denotes To stop the COVID‐19 pandemic, the challenge is for all countries to scale up and sustain prevention measures while awaiting the arrival of effective vaccines and therapies.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 567-576 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 578-597 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T3 4342-4347 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 4352-4371 Phenotype denotes nonproductive cough http://purl.obolibrary.org/obo/HP_0031246
T5 4469-4476 Phenotype denotes anosmia http://purl.obolibrary.org/obo/HP_0000458
T6 4481-4488 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T7 4494-4507 Phenotype denotes loss of smell http://purl.obolibrary.org/obo/HP_0000458
T8 4609-4620 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T9 4811-4820 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 5010-5015 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T11 5026-5031 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T12 5066-5073 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T13 5084-5091 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T14 5092-5099 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T15 5110-5118 Phenotype denotes Headache http://purl.obolibrary.org/obo/HP_0002315
T16 5129-5144 Phenotype denotes Nausea/Vomiting http://purl.obolibrary.org/obo/HP_0002017
T17 5154-5162 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T18 5228-5239 Phenotype denotes Lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T19 5441-5461 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T20 6664-6673 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T21 6690-6697 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T22 7239-7246 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513
T23 7248-7260 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T24 7276-7298 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T25 7411-7424 Phenotype denotes liver disease http://purl.obolibrary.org/obo/HP_0001392
T26 7436-7445 Phenotype denotes cirrhosis http://purl.obolibrary.org/obo/HP_0001394
T27 8243-8250 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T28 8259-8271 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T29 8280-8297 Phenotype denotes Diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T30 8317-8339 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T31 8408-8421 Phenotype denotes liver disease http://purl.obolibrary.org/obo/HP_0001392
T32 11245-11251 Phenotype denotes Sneeze http://purl.obolibrary.org/obo/HP_0025095
T33 11255-11260 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T34 13217-13231 Phenotype denotes Liver Diseases http://purl.obolibrary.org/obo/HP_0001392