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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
27 2980-2992 Gene denotes hyposmia5–14
28 1618-1628 Species denotes Zika virus Tax:64320
29 3218-3227 Chemical denotes Lopinavir MESH:D061466
30 1641-1651 Disease denotes COVID SARS MESH:C000657245
31 2023-2027 Disease denotes pain MESH:D010146
32 2040-2077 Disease denotes weakness of limbsLess commonAreflexic MESH:D018908
33 2271-2275 Disease denotes rash MESH:D005076
34 2277-2284 Disease denotes myalgia MESH:D063806
35 2313-2321 Disease denotes weakness MESH:D018908
36 2336-2422 Disease denotes facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess commonLess MESH:D005148
37 2587-2595 Disease denotes headache MESH:D006261
38 2597-2601 Disease denotes rash MESH:D005076
39 2603-2613 Disease denotes arthralgia MESH:D018771
40 2615-2623 Disease denotes diarrhea MESH:D003967
41 2679-2692 Disease denotes limb weakness MESH:D018908
42 2694-2754 Disease denotes facial weaknessMore commonAreflexic quadri/paraparesisCommon MESH:D005148
43 2955-2960 Disease denotes cough MESH:D003371
44 2962-2969 Disease denotes dyspnea MESH:D004417
45 2971-2978 Disease denotes ageusia MESH:D000370
46 3016-3029 Disease denotes limb weakness MESH:D018908
47 3031-3106 Disease denotes facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess MESH:D005148
48 3140-3153 Disease denotes AIDPPneumonia
49 3168-3190 Disease denotes pneumonitisEnhancement
50 3273-3281 Disease denotes weakness MESH:D018908
51 3283-3292 Disease denotes dysphagia MESH:D003680
54 1540-1550 Species denotes Zika virus Tax:64320
55 1555-1565 Disease denotes COVID SARS MESH:C000657245
59 3334-3362 Disease denotes demyelinating polyneuropathy MESH:D003711
60 3377-3400 Disease denotes motor axonal neuropathy MESH:C536450
61 3416-3447 Disease denotes motor sensory axonal neuropathy MESH:C536450
93 473-481 Species denotes patients Tax:9606
94 603-611 Species denotes Patients Tax:9606
95 989-999 Species denotes Zika virus Tax:64320
96 1034-1042 Species denotes patients Tax:9606
97 1131-1139 Species denotes patients Tax:9606
98 1232-1240 Species denotes patients Tax:9606
99 1385-1393 Species denotes patients Tax:9606
100 1184-1194 Chemical denotes Gadolinium MESH:D005682
101 1250-1268 Chemical denotes hydroxychloroquine MESH:D006886
102 1270-1282 Chemical denotes azithromycin MESH:D017963
103 1284-1293 Chemical denotes lopinavir MESH:D061466
104 1298-1307 Chemical denotes ritonavir MESH:D019438
105 73-94 Disease denotes SARS-Cov-19 infection MESH:C000657245
106 211-219 Disease denotes COVID-19 MESH:C000657245
107 220-229 Disease denotes infection MESH:D007239
108 300-308 Disease denotes COVID-19 MESH:C000657245
109 351-374 Disease denotes areflexic quadriparesis MESH:D011782
110 487-495 Disease denotes COVID-19 MESH:C000657245
111 546-553 Disease denotes ageusia MESH:D000370
112 558-566 Disease denotes hyposmia MESH:D000857
113 583-591 Disease denotes COVID-19 MESH:C000657245
114 592-601 Disease denotes infection MESH:D007239
115 617-625 Disease denotes COVID-19 MESH:C000657245
116 664-683 Disease denotes respiratory failure MESH:D012131
117 697-706 Disease denotes pneumonia MESH:D011014
118 724-735 Disease denotes pneumonitis MESH:D011014
119 902-926 Disease denotes demyelinating neuropathy MESH:D003711
120 1013-1021 Disease denotes COVID-19 MESH:C000657245
121 1071-1106 Disease denotes axonal motor-sensory polyneuropathy MESH:D011115
122 1223-1231 Disease denotes COVID-19 MESH:C000657245
123 1465-1474 Disease denotes dysphagia MESH:D003680

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 776-781 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 785-790 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 1169-1180 Body_part denotes nerve roots http://purl.org/sig/ont/fma/fma5981
T4 1169-1174 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132
T5 1211-1216 Body_part denotes spine http://purl.org/sig/ont/fma/fma13478
T6 1335-1349 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871
T7 1816-1830 Body_part denotes cranial nerves http://purl.org/sig/ont/fma/fma63820
T8 1893-1898 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T9 2673-2683 Body_part denotes lower limb http://purl.org/sig/ont/fma/fma7184
T10 2812-2825 Body_part denotes cranial nerve http://purl.org/sig/ont/fma/fma5865
T11 3010-3020 Body_part denotes lower limb http://purl.org/sig/ont/fma/fma7184
T12 3201-3206 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 785-790 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1169-1180 Body_part denotes nerve roots http://purl.obolibrary.org/obo/UBERON_0002211
T3 1169-1174 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T4 1816-1830 Body_part denotes cranial nerves http://purl.obolibrary.org/obo/UBERON_0001785
T5 1893-1898 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955
T6 2679-2683 Body_part denotes limb http://purl.obolibrary.org/obo/UBERON_0002101
T7 2812-2825 Body_part denotes cranial nerve http://purl.obolibrary.org/obo/UBERON_0001785
T8 2820-2825 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T9 3016-3020 Body_part denotes limb http://purl.obolibrary.org/obo/UBERON_0002101
T10 3201-3206 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 361-374 Phenotype denotes quadriparesis http://purl.obolibrary.org/obo/HP_0002273
T2 546-553 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T3 558-566 Phenotype denotes hyposmia http://purl.obolibrary.org/obo/HP_0004409
T4 664-683 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T5 697-706 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 711-735 Phenotype denotes interstitial pneumonitis http://purl.obolibrary.org/obo/HP_0006515
T7 902-915 Phenotype denotes demyelinating http://purl.obolibrary.org/obo/HP_0011096
T8 916-926 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830
T9 1092-1106 Phenotype denotes polyneuropathy http://purl.obolibrary.org/obo/HP_0001271
T10 1465-1474 Phenotype denotes dysphagia http://purl.obolibrary.org/obo/HP_0002015
T11 2023-2027 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T12 2271-2275 Phenotype denotes rash http://purl.obolibrary.org/obo/HP_0000988
T13 2277-2284 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T14 2323-2334 Phenotype denotes paresthesia http://purl.obolibrary.org/obo/HP_0003401
T15 2587-2595 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T16 2597-2601 Phenotype denotes rash http://purl.obolibrary.org/obo/HP_0000988
T17 2603-2613 Phenotype denotes arthralgia http://purl.obolibrary.org/obo/HP_0002829
T18 2615-2623 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T19 2660-2671 Phenotype denotes paresthesia http://purl.obolibrary.org/obo/HP_0003401
T20 2673-2692 Phenotype denotes lower limb weakness http://purl.obolibrary.org/obo/HP_0007340
T21 2955-2960 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T22 2962-2969 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T23 2971-2978 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T24 3010-3029 Phenotype denotes lower limb weakness http://purl.obolibrary.org/obo/HP_0007340
T25 3283-3292 Phenotype denotes dysphagia http://purl.obolibrary.org/obo/HP_0002015
T26 3334-3347 Phenotype denotes demyelinating http://purl.obolibrary.org/obo/HP_0011096
T27 3348-3362 Phenotype denotes polyneuropathy http://purl.obolibrary.org/obo/HP_0001271
T28 3377-3400 Phenotype denotes motor axonal neuropathy http://purl.obolibrary.org/obo/HP_0007002
T29 3422-3447 Phenotype denotes sensory axonal neuropathy http://purl.obolibrary.org/obo/HP_0003390

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 36-59 Disease denotes Guillain-Barré syndrome http://purl.obolibrary.org/obo/MONDO_0016218
T4 73-77 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 85-94 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 161-184 Disease denotes Guillain-Barré syndrome http://purl.obolibrary.org/obo/MONDO_0016218
T7 186-189 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T8 211-219 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 220-229 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 300-308 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 317-320 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T12 487-495 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 504-507 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T14 583-591 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 592-601 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 617-625 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 634-637 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T18 664-683 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T19 697-706 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 724-735 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T21 916-926 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T22 955-958 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T23 963-966 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T24 978-984 Disease denotes dengue http://purl.obolibrary.org/obo/MONDO_0005502
T25 989-993 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T26 1013-1021 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 1030-1033 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T28 1061-1065 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T29 1092-1106 Disease denotes polyneuropathy http://purl.obolibrary.org/obo/MONDO_0001824
T30 1108-1113 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T31 1223-1231 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 1527-1530 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T33 1532-1538 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T34 1540-1544 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T35 1561-1565 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 1574-1577 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T37 1595-1598 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T38 1599-1605 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T39 1614-1617 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T40 1618-1622 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T41 1637-1640 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T42 1647-1651 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 1660-1663 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T44 2469-2474 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T45 2615-2623 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T46 2827-2831 Disease denotes AIDP http://purl.obolibrary.org/obo/MONDO_0020347
T47 2834-2838 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T48 2840-2845 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T49 3127-3132 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T50 3134-3138 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T51 3308-3312 Disease denotes AIDP http://purl.obolibrary.org/obo/MONDO_0020347
T52 3315-3362 Disease denotes Acute inflammatory demyelinating polyneuropathy http://purl.obolibrary.org/obo/MONDO_0016218
T53 3334-3362 Disease denotes demyelinating polyneuropathy http://purl.obolibrary.org/obo/MONDO_0003334
T54 3348-3362 Disease denotes polyneuropathy http://purl.obolibrary.org/obo/MONDO_0001824
T55 3364-3368 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T56 3371-3400 Disease denotes Acute motor axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0020349
T57 3383-3400 Disease denotes axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0004183
T58 3390-3400 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T59 3402-3407 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T60 3410-3447 Disease denotes Acute motor sensory axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0020348
T61 3430-3447 Disease denotes axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0004183
T62 3437-3447 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 461-465 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T2 642-643 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 776-781 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T4 785-790 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T5 994-999 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 1116-1117 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 1169-1174 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T8 1545-1550 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 1623-1628 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T10 1824-1830 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves
T11 1893-1898 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T12 1893-1898 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T13 2679-2683 http://www.ebi.ac.uk/efo/EFO_0000876 denotes limb
T14 2820-2825 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T15 3016-3020 http://www.ebi.ac.uk/efo/EFO_0000876 denotes limb
T16 3201-3206 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1250-1268 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T2 1270-1282 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T3 1284-1307 Chemical denotes lopinavir and ritonavir http://purl.obolibrary.org/obo/CHEBI_145924
T4 1284-1293 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T5 1298-1307 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T6 3218-3227 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T7 3229-3238 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-107 Sentence denotes We read with interest the report of Guillain-Barré syndrome secondary to SARS-Cov-19 infection (Coen et al.
T3 108-114 Sentence denotes 2020).
T4 115-294 Sentence denotes Recently, there have been multiple reports of Guillain-Barré syndrome (GBS) associated with the COVID-19 infection (Sedaghat and Karimi, 2020, Toscano et al.,, Zhao et al., 2020).
T5 295-375 Sentence denotes Most COVID-19-related GBS presented with acute onset of areflexic quadriparesis.
T6 376-467 Sentence denotes However, there are some important differences to highlight (table 1 ). (Garg et al., 2018).
T7 468-521 Sentence denotes Most patients with COVID-19-related GBS were elderly.
T8 522-602 Sentence denotes Preceding symptoms like ageusia and hyposmia were unique for COVID-19 infection.
T9 603-736 Sentence denotes Patients with COVID-19-related GBS had a severe disease with respiratory failure due to lobar pneumonia and interstitial pneumonitis.
T10 737-815 Sentence denotes They showed ground-glass appearance of lungs on chest computerized tomography.
T11 816-895 Sentence denotes Increased severity of disease is also evident from the electrophysiology study.
T12 896-1115 Sentence denotes Where demyelinating neuropathy is more common with typical GBS and GBS related to dengue and Zika virus, majority of COVID-19-related GBS patients had axonal motor (AMAN) and axonal motor-sensory polyneuropathy (AMSAN).
T13 1116-1217 Sentence denotes A few of these patients showed enhancement of caudal nerve roots on Gadolinium-enhanced MRI of spine.
T14 1218-1357 Sentence denotes Most COVID-19 patients received hydroxychloroquine, azithromycin, lopinavir and ritonavir in addition to intravenous immunoglobulin (IVIG).
T15 1358-1475 Sentence denotes However, more than half of patients showed poor outcome in the form of long ICU stay, residual paresis and dysphagia.
T16 1476-1578 Sentence denotes Table 1 Differences in the presentation of Typical GBS, Dengue, Zika virus and COVID SARS related GBS.
T17 1579-1663 Sentence denotes Feature Typical GBS Dengue-related GBS Zika virus-related GBS COVID SARS related GBS
T18 1664-3307 Sentence denotes Geographical distributionAgeSexPreceding illnessMean time to GBSInitial symptomsDysphagiaSignsFacial diplegiaDysautonomiaAtaxiaRespiratory failureOther cranial nerves involvedLeukopeniaThrombocytopeniaNerve conductionCT chestMRI Brain/spineTreatmentOutcome GlobalAll age groupsMales 1.5 times more affectedRespiratory or gastrointestinal< 6 weeksParesthesia, pain followed by weakness of limbsLess commonAreflexic quadreparesisCommonCommonLess common25%Ocular nervesUncommonUncommonAIDP--IVIG, PlasmapherisisGood, persistent disability in 20%-30% Latin America, IndiaAll age groupsMales:Females EqualFever, rash, myalgia, headache1–30 daysAscending weakness, paresthesia, facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess commonLess commonGlossopharyngeal nerveCommonCommonAIDP, AMSAN--IVIG, PlasmapheresisGood Latin America, Europe, East Asia, North AmericalMiddle age to elderlyMore malesFever, headache, rash, arthralgia, diarrhea, conjunctivitis0–10 daysLimb pains, paresthesia, lower limb weakness, facial weaknessMore commonAreflexic quadri/paraparesisCommon (>50%)Common (up to 30%)Common (up to 70%)Less common3rd cranial nerve--AIDP > AMAN, AMSAN--IVIG, PlasmapheresisGood, half may require ICU care China, Iran, Europe, USAUsually elderlyMore malesFever, cough, dyspnea, ageusia, hyposmia5–14 daysParesthesia, lower limb weakness, facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess commonCommon-Common-AMSAN, AMAN, AIDPPneumonia, interstitial pneumonitisEnhancement of caudal nerve rootsIVIG, Lopinavir, ritonavir, HCQ, Azithromycin,Poor, residual weakness, dysphagia, long ICU stay
T19 3308-3448 Sentence denotes AIDP – Acute inflammatory demyelinating polyneuropathy, AMAN – Acute motor axonal neuropathy, AMSAN – Acute motor sensory axonal neuropathy.