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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 3-11 Disease denotes COVID-19 MESH:C000657245
27 3036-3048 Gene denotes hyposmia5–14
28 1674-1684 Species denotes Zika virus Tax:64320
29 3274-3283 Chemical denotes Lopinavir MESH:D061466
30 1697-1707 Disease denotes COVID SARS MESH:C000657245
31 2079-2083 Disease denotes pain MESH:D010146
32 2096-2133 Disease denotes weakness of limbsLess commonAreflexic MESH:D018908
33 2327-2331 Disease denotes rash MESH:D005076
34 2333-2340 Disease denotes myalgia MESH:D063806
35 2369-2377 Disease denotes weakness MESH:D018908
36 2392-2478 Disease denotes facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess commonLess MESH:D005148
37 2643-2651 Disease denotes headache MESH:D006261
38 2653-2657 Disease denotes rash MESH:D005076
39 2659-2669 Disease denotes arthralgia MESH:D018771
40 2671-2679 Disease denotes diarrhea MESH:D003967
41 2735-2748 Disease denotes limb weakness MESH:D018908
42 2750-2810 Disease denotes facial weaknessMore commonAreflexic quadri/paraparesisCommon MESH:D005148
43 3011-3016 Disease denotes cough MESH:D003371
44 3018-3025 Disease denotes dyspnea MESH:D004417
45 3027-3034 Disease denotes ageusia MESH:D000370
46 3072-3085 Disease denotes limb weakness MESH:D018908
47 3087-3162 Disease denotes facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess MESH:D005148
48 3196-3209 Disease denotes AIDPPneumonia
49 3224-3246 Disease denotes pneumonitisEnhancement
50 3329-3337 Disease denotes weakness MESH:D018908
51 3339-3348 Disease denotes dysphagia MESH:D003680
54 1596-1606 Species denotes Zika virus Tax:64320
55 1611-1621 Disease denotes COVID SARS MESH:C000657245
59 3390-3418 Disease denotes demyelinating polyneuropathy MESH:D003711
60 3433-3456 Disease denotes motor axonal neuropathy MESH:C536450
61 3472-3503 Disease denotes motor sensory axonal neuropathy MESH:C536450
93 529-537 Species denotes patients Tax:9606
94 659-667 Species denotes Patients Tax:9606
95 1045-1055 Species denotes Zika virus Tax:64320
96 1090-1098 Species denotes patients Tax:9606
97 1187-1195 Species denotes patients Tax:9606
98 1288-1296 Species denotes patients Tax:9606
99 1441-1449 Species denotes patients Tax:9606
100 1240-1250 Chemical denotes Gadolinium MESH:D005682
101 1306-1324 Chemical denotes hydroxychloroquine MESH:D006886
102 1326-1338 Chemical denotes azithromycin MESH:D017963
103 1340-1349 Chemical denotes lopinavir MESH:D061466
104 1354-1363 Chemical denotes ritonavir MESH:D019438
105 129-150 Disease denotes SARS-Cov-19 infection MESH:C000657245
106 267-275 Disease denotes COVID-19 MESH:C000657245
107 276-285 Disease denotes infection MESH:D007239
108 356-364 Disease denotes COVID-19 MESH:C000657245
109 407-430 Disease denotes areflexic quadriparesis MESH:D011782
110 543-551 Disease denotes COVID-19 MESH:C000657245
111 602-609 Disease denotes ageusia MESH:D000370
112 614-622 Disease denotes hyposmia MESH:D000857
113 639-647 Disease denotes COVID-19 MESH:C000657245
114 648-657 Disease denotes infection MESH:D007239
115 673-681 Disease denotes COVID-19 MESH:C000657245
116 720-739 Disease denotes respiratory failure MESH:D012131
117 753-762 Disease denotes pneumonia MESH:D011014
118 780-791 Disease denotes pneumonitis MESH:D011014
119 958-982 Disease denotes demyelinating neuropathy MESH:D003711
120 1069-1077 Disease denotes COVID-19 MESH:C000657245
121 1127-1162 Disease denotes axonal motor-sensory polyneuropathy MESH:D011115
122 1279-1287 Disease denotes COVID-19 MESH:C000657245
123 1521-1530 Disease denotes dysphagia MESH:D003680
136 3843-3863 Species denotes Campylobacter jejuni Tax:197
137 3881-3887 Species denotes jejuni Tax:197
138 3975-3981 Species denotes jejuni Tax:197
139 3906-3918 Chemical denotes gangliosides MESH:D005732
140 4029-4041 Chemical denotes gangliosides MESH:D005732
141 4070-4073 Chemical denotes GM1 MESH:D005677
142 4081-4087 Chemical denotes GalNac
143 4133-4144 Chemical denotes ganglioside MESH:D005732
144 3508-3516 Disease denotes COVID-19 MESH:C000657245
145 3563-3577 Disease denotes polyneuropathy MESH:D011115
146 3766-3775 Disease denotes infection MESH:D007239
147 3957-3966 Disease denotes infection MESH:D007239
168 4406-4414 Species denotes patients Tax:9606
169 4420-4432 Species denotes dengue virus Tax:12637
170 4510-4518 Species denotes patients Tax:9606
171 4537-4547 Species denotes Zika virus Tax:64320
172 5054-5062 Species denotes patients Tax:9606
173 5166-5174 Species denotes patients Tax:9606
174 5191-5201 Species denotes Zika virus Tax:64320
175 5289-5297 Species denotes patients Tax:9606
176 4472-4483 Chemical denotes ganglioside MESH:D005732
177 4524-4532 Disease denotes COVID-19 MESH:C000657245
178 4625-4635 Disease denotes neuropathy MESH:D009422
179 4639-4655 Disease denotes viral infections MESH:D001102
180 4784-4794 Disease denotes neurotoxic MESH:D020258
181 4852-4861 Disease denotes infection MESH:D007239
182 4959-4974 Disease denotes viral infection MESH:D001102
183 5014-5024 Disease denotes neurotoxic MESH:D020258
184 5045-5053 Disease denotes COVID-19 MESH:C000657245
185 5253-5262 Disease denotes pneumonia MESH:D011014
186 5280-5288 Disease denotes COVID-19 MESH:C000657245
187 5364-5372 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 832-837 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 841-846 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 1225-1236 Body_part denotes nerve roots http://purl.org/sig/ont/fma/fma5981
T4 1225-1230 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132
T5 1267-1272 Body_part denotes spine http://purl.org/sig/ont/fma/fma13478
T6 1391-1405 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871
T7 1872-1886 Body_part denotes cranial nerves http://purl.org/sig/ont/fma/fma63820
T8 1949-1954 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T9 2729-2739 Body_part denotes lower limb http://purl.org/sig/ont/fma/fma7184
T10 2868-2881 Body_part denotes cranial nerve http://purl.org/sig/ont/fma/fma5865
T11 3066-3076 Body_part denotes lower limb http://purl.org/sig/ont/fma/fma7184
T12 3257-3262 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132
T13 3645-3661 Body_part denotes peripheral nerve http://purl.org/sig/ont/fma/fma65239
T14 3713-3725 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T15 3713-3717 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T16 3906-3918 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T17 3993-4001 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T18 4029-4041 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T19 4133-4144 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T20 4301-4317 Body_part denotes peripheral nerve http://purl.org/sig/ont/fma/fma65239
T21 4318-4329 Body_part denotes glycolipids http://purl.org/sig/ont/fma/fma82780
T22 4375-4383 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T23 4472-4483 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T24 4484-4492 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T25 4758-4763 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132
T26 4865-4882 Body_part denotes peripheral nerves http://purl.org/sig/ont/fma/fma65239
T27 5303-5309 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T28 5324-5330 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T29 5611-5619 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T30 5789-5797 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 841-846 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1225-1236 Body_part denotes nerve roots http://purl.obolibrary.org/obo/UBERON_0002211
T3 1225-1230 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T4 1872-1886 Body_part denotes cranial nerves http://purl.obolibrary.org/obo/UBERON_0001785
T5 1949-1954 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955
T6 2735-2739 Body_part denotes limb http://purl.obolibrary.org/obo/UBERON_0002101
T7 2868-2881 Body_part denotes cranial nerve http://purl.obolibrary.org/obo/UBERON_0001785
T8 2876-2881 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T9 3072-3076 Body_part denotes limb http://purl.obolibrary.org/obo/UBERON_0002101
T10 3257-3262 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T11 3656-3661 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T12 4312-4317 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T13 4758-4763 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 417-430 Phenotype denotes quadriparesis http://purl.obolibrary.org/obo/HP_0002273
T2 602-609 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T3 614-622 Phenotype denotes hyposmia http://purl.obolibrary.org/obo/HP_0004409
T4 720-739 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T5 753-762 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 767-791 Phenotype denotes interstitial pneumonitis http://purl.obolibrary.org/obo/HP_0006515
T7 958-971 Phenotype denotes demyelinating http://purl.obolibrary.org/obo/HP_0011096
T8 972-982 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830
T9 1148-1162 Phenotype denotes polyneuropathy http://purl.obolibrary.org/obo/HP_0001271
T10 1521-1530 Phenotype denotes dysphagia http://purl.obolibrary.org/obo/HP_0002015
T11 2079-2083 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T12 2327-2331 Phenotype denotes rash http://purl.obolibrary.org/obo/HP_0000988
T13 2333-2340 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T14 2379-2390 Phenotype denotes paresthesia http://purl.obolibrary.org/obo/HP_0003401
T15 2643-2651 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T16 2653-2657 Phenotype denotes rash http://purl.obolibrary.org/obo/HP_0000988
T17 2659-2669 Phenotype denotes arthralgia http://purl.obolibrary.org/obo/HP_0002829
T18 2671-2679 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T19 2716-2727 Phenotype denotes paresthesia http://purl.obolibrary.org/obo/HP_0003401
T20 2729-2748 Phenotype denotes lower limb weakness http://purl.obolibrary.org/obo/HP_0007340
T21 3011-3016 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T22 3018-3025 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T23 3027-3034 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T24 3066-3085 Phenotype denotes lower limb weakness http://purl.obolibrary.org/obo/HP_0007340
T25 3339-3348 Phenotype denotes dysphagia http://purl.obolibrary.org/obo/HP_0002015
T26 3390-3403 Phenotype denotes demyelinating http://purl.obolibrary.org/obo/HP_0011096
T27 3404-3418 Phenotype denotes polyneuropathy http://purl.obolibrary.org/obo/HP_0001271
T28 3433-3456 Phenotype denotes motor axonal neuropathy http://purl.obolibrary.org/obo/HP_0007002
T29 3478-3503 Phenotype denotes sensory axonal neuropathy http://purl.obolibrary.org/obo/HP_0003390
T30 3563-3577 Phenotype denotes polyneuropathy http://purl.obolibrary.org/obo/HP_0001271
T31 4625-4635 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830
T32 5253-5262 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 3-11 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 20-43 Disease denotes Guillain-Barré syndrome http://purl.obolibrary.org/obo/MONDO_0016218
T3 92-115 Disease denotes Guillain-Barré syndrome http://purl.obolibrary.org/obo/MONDO_0016218
T4 129-133 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 141-150 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 217-240 Disease denotes Guillain-Barré syndrome http://purl.obolibrary.org/obo/MONDO_0016218
T7 242-245 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T8 267-275 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 276-285 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 356-364 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 373-376 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T12 543-551 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 560-563 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T14 639-647 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 648-657 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 673-681 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 690-693 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T18 720-739 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T19 753-762 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 780-791 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T21 972-982 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T22 1011-1014 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T23 1019-1022 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T24 1034-1040 Disease denotes dengue http://purl.obolibrary.org/obo/MONDO_0005502
T25 1045-1049 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T26 1069-1077 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 1086-1089 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T28 1117-1121 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T29 1148-1162 Disease denotes polyneuropathy http://purl.obolibrary.org/obo/MONDO_0001824
T30 1164-1169 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T31 1279-1287 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 1583-1586 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T33 1588-1594 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T34 1596-1600 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T35 1617-1621 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 1630-1633 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T37 1651-1654 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T38 1655-1661 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T39 1670-1673 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T40 1674-1678 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T41 1693-1696 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T42 1703-1707 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 1716-1719 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T44 2525-2530 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T45 2671-2679 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T46 2883-2887 Disease denotes AIDP http://purl.obolibrary.org/obo/MONDO_0020347
T47 2890-2894 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T48 2896-2901 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T49 3183-3188 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T50 3190-3194 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T51 3364-3368 Disease denotes AIDP http://purl.obolibrary.org/obo/MONDO_0020347
T52 3371-3418 Disease denotes Acute inflammatory demyelinating polyneuropathy http://purl.obolibrary.org/obo/MONDO_0016218
T53 3390-3418 Disease denotes demyelinating polyneuropathy http://purl.obolibrary.org/obo/MONDO_0003334
T54 3404-3418 Disease denotes polyneuropathy http://purl.obolibrary.org/obo/MONDO_0001824
T55 3420-3424 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T56 3427-3456 Disease denotes Acute motor axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0020349
T57 3439-3456 Disease denotes axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0004183
T58 3446-3456 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T59 3458-3463 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T60 3466-3503 Disease denotes Acute motor sensory axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0020348
T61 3486-3503 Disease denotes axonal neuropathy http://purl.obolibrary.org/obo/MONDO_0004183
T62 3493-3503 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T63 3508-3516 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 3525-3528 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T65 3563-3577 Disease denotes polyneuropathy http://purl.obolibrary.org/obo/MONDO_0001824
T66 3581-3584 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T67 3766-3775 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T68 3873-3876 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T69 3957-3966 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 4184-4188 Disease denotes AMAN http://purl.obolibrary.org/obo/MONDO_0020349
T71 4190-4195 Disease denotes AMSAN http://purl.obolibrary.org/obo/MONDO_0020348
T72 4215-4230 Disease denotes variants of GBS http://purl.obolibrary.org/obo/MONDO_0016493
T73 4227-4230 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T74 4420-4426 Disease denotes dengue http://purl.obolibrary.org/obo/MONDO_0005502
T75 4441-4444 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T76 4524-4532 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 4537-4541 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T78 4556-4559 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T79 4625-4635 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T80 4639-4655 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T81 4664-4667 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T82 4852-4861 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T83 4959-4974 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T84 4965-4974 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T85 4983-4986 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T86 5045-5053 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 5068-5072 Disease denotes AIDP http://purl.obolibrary.org/obo/MONDO_0020347
T88 5123-5138 Disease denotes variants of GBS http://purl.obolibrary.org/obo/MONDO_0016493
T89 5135-5138 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T90 5180-5186 Disease denotes dengue http://purl.obolibrary.org/obo/MONDO_0005502
T91 5191-5195 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T92 5210-5213 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T93 5253-5262 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T94 5280-5288 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T95 5364-5372 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T96 5381-5384 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 517-521 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T2 698-699 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 832-837 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T4 841-846 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T5 1050-1055 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 1172-1173 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 1225-1230 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T8 1601-1606 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 1679-1684 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T10 1880-1886 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves
T11 1949-1954 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T12 1949-1954 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T13 2735-2739 http://www.ebi.ac.uk/efo/EFO_0000876 denotes limb
T14 2876-2881 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T15 3072-3076 http://www.ebi.ac.uk/efo/EFO_0000876 denotes limb
T16 3257-3262 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T17 3529-3532 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 3533-3534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 3645-3661 http://purl.obolibrary.org/obo/UBERON_0001021 denotes peripheral nerve
T20 3713-3717 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T21 3729-3737 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T22 4060-4068 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T23 4301-4317 http://purl.obolibrary.org/obo/UBERON_0001021 denotes peripheral nerve
T24 4400-4401 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4427-4432 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 4542-4547 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T27 4593-4596 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 4741-4748 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T29 4758-4763 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T30 4876-4882 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves
T31 4886-4893 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T32 5036-5043 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T33 5140-5141 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 5196-5201 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 5225-5226 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 5263-5266 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T37 5303-5309 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T38 5324-5330 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T39 5620-5621 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 5798-5799 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1306-1324 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T2 1326-1338 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T3 1340-1363 Chemical denotes lopinavir and ritonavir http://purl.obolibrary.org/obo/CHEBI_145924
T4 1340-1349 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T5 1354-1363 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T6 3274-3283 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T7 3285-3294 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T8 3906-3918 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T9 3919-3926 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T10 4029-4041 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T11 4070-4073 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T14 4075-4079 Chemical denotes GD1a http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607
T16 4088-4092 Chemical denotes GD1a http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607
T18 4094-4098 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T19 4103-4107 Chemical denotes GQ1b http://purl.obolibrary.org/obo/CHEBI_27515
T20 4133-4144 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T21 4288-4296 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T22 4318-4329 Chemical denotes glycolipids http://purl.obolibrary.org/obo/CHEBI_33563
T23 4370-4374 Chemical denotes GD1a http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607
T25 4472-4483 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3545-3557 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T2 4002-4011 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T3 4639-4655 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T4 4959-4974 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-54 Sentence denotes Is COVID-19-related Guillain-Barré syndrome different?
T2 56-163 Sentence denotes We read with interest the report of Guillain-Barré syndrome secondary to SARS-Cov-19 infection (Coen et al.
T3 164-170 Sentence denotes 2020).
T4 171-350 Sentence denotes Recently, there have been multiple reports of Guillain-Barré syndrome (GBS) associated with the COVID-19 infection (Sedaghat and Karimi, 2020, Toscano et al.,, Zhao et al., 2020).
T5 351-431 Sentence denotes Most COVID-19-related GBS presented with acute onset of areflexic quadriparesis.
T6 432-523 Sentence denotes However, there are some important differences to highlight (table 1 ). (Garg et al., 2018).
T7 524-577 Sentence denotes Most patients with COVID-19-related GBS were elderly.
T8 578-658 Sentence denotes Preceding symptoms like ageusia and hyposmia were unique for COVID-19 infection.
T9 659-792 Sentence denotes Patients with COVID-19-related GBS had a severe disease with respiratory failure due to lobar pneumonia and interstitial pneumonitis.
T10 793-871 Sentence denotes They showed ground-glass appearance of lungs on chest computerized tomography.
T11 872-951 Sentence denotes Increased severity of disease is also evident from the electrophysiology study.
T12 952-1171 Sentence denotes Where demyelinating neuropathy is more common with typical GBS and GBS related to dengue and Zika virus, majority of COVID-19-related GBS patients had axonal motor (AMAN) and axonal motor-sensory polyneuropathy (AMSAN).
T13 1172-1273 Sentence denotes A few of these patients showed enhancement of caudal nerve roots on Gadolinium-enhanced MRI of spine.
T14 1274-1413 Sentence denotes Most COVID-19 patients received hydroxychloroquine, azithromycin, lopinavir and ritonavir in addition to intravenous immunoglobulin (IVIG).
T15 1414-1531 Sentence denotes However, more than half of patients showed poor outcome in the form of long ICU stay, residual paresis and dysphagia.
T16 1532-1634 Sentence denotes Table 1 Differences in the presentation of Typical GBS, Dengue, Zika virus and COVID SARS related GBS.
T17 1635-1719 Sentence denotes Feature Typical GBS Dengue-related GBS Zika virus-related GBS COVID SARS related GBS
T18 1720-3363 Sentence denotes Geographical distributionAgeSexPreceding illnessMean time to GBSInitial symptomsDysphagiaSignsFacial diplegiaDysautonomiaAtaxiaRespiratory failureOther cranial nerves involvedLeukopeniaThrombocytopeniaNerve conductionCT chestMRI Brain/spineTreatmentOutcome GlobalAll age groupsMales 1.5 times more affectedRespiratory or gastrointestinal< 6 weeksParesthesia, pain followed by weakness of limbsLess commonAreflexic quadreparesisCommonCommonLess common25%Ocular nervesUncommonUncommonAIDP--IVIG, PlasmapherisisGood, persistent disability in 20%-30% Latin America, IndiaAll age groupsMales:Females EqualFever, rash, myalgia, headache1–30 daysAscending weakness, paresthesia, facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess commonLess commonGlossopharyngeal nerveCommonCommonAIDP, AMSAN--IVIG, PlasmapheresisGood Latin America, Europe, East Asia, North AmericalMiddle age to elderlyMore malesFever, headache, rash, arthralgia, diarrhea, conjunctivitis0–10 daysLimb pains, paresthesia, lower limb weakness, facial weaknessMore commonAreflexic quadri/paraparesisCommon (>50%)Common (up to 30%)Common (up to 70%)Less common3rd cranial nerve--AIDP > AMAN, AMSAN--IVIG, PlasmapheresisGood, half may require ICU care China, Iran, Europe, USAUsually elderlyMore malesFever, cough, dyspnea, ageusia, hyposmia5–14 daysParesthesia, lower limb weakness, facial weaknessLess commonAreflexic quadri/paraparesisCommonLess commonLess commonCommon-Common-AMSAN, AMAN, AIDPPneumonia, interstitial pneumonitisEnhancement of caudal nerve rootsIVIG, Lopinavir, ritonavir, HCQ, Azithromycin,Poor, residual weakness, dysphagia, long ICU stay
T19 3364-3504 Sentence denotes AIDP – Acute inflammatory demyelinating polyneuropathy, AMAN – Acute motor axonal neuropathy, AMSAN – Acute motor sensory axonal neuropathy.
T20 3505-3558 Sentence denotes Is COVID-19-related GBS has a different pathogenesis?
T21 3559-3776 Sentence denotes The polyneuropathy in GBS is believed to be due to cross-immunity against epitopes of peripheral nerve components that it shares with the epitopes on the cell surface of bacteria that produces an antecedent infection.
T22 3777-3877 Sentence denotes This mechanism of “molecular mimicry” is best understood with the Campylobacter jejuni -related GBS.
T23 3878-3945 Sentence denotes C. jejuni expresses various gangliosides antigen on its outer core.
T24 3946-4109 Sentence denotes Antecedent infection with C. jejuni results in antibody formation against specific gangliosides present on axonal membrane (GM1, GD1a, GalNac-GD1a, GD1b and GQ1b).
T25 4110-4254 Sentence denotes Presence of these anti-ganglioside antibodies is strongly associated with AMAN, AMSAN and Miller-Fischer variants of GBS (Ogawara et al., 2000).
T26 4255-4360 Sentence denotes The cross-immunity between viral antigens and peripheral nerve glycolipids have not been well-documented.
T27 4361-4466 Sentence denotes Positive GD1a antibody was reported in a few patients with dengue virus-related GBS (Simon et al., 2016).
T28 4467-4587 Sentence denotes Anti-ganglioside antibody was not found in patients with COVID-19 and Zika virus-related GBS (Cao-Lormeau et al., 2016).
T29 4588-4803 Sentence denotes This has led to speculation that the neuropathy in viral infections-related GBS could be due to other autoantibodies that are not detected as yet or the viruses produced nerve damage due to other neurotoxic effects.
T30 4804-4924 Sentence denotes However, there is paucity of evidence of direct infection of peripheral nerves by viruses from the pathological studies.
T31 4925-5044 Sentence denotes Good response to immunotherapy in viral infection-related GBS is also against the direct neurotoxic effects of viruses.
T32 5045-5214 Sentence denotes COVID-19 patients with AIDP responded better as compared to those with axonal variants of GBS; a difference also seen in patients with dengue and Zika virus-related GBS.
T33 5215-5318 Sentence denotes Recently, a good clinical response in pneumonia has been seen in COVID-19 patients with plasma therapy.
T34 5319-5403 Sentence denotes Does plasma therapy produce good recovery in COVID-19-related GBS is yet to be seen.
T35 5405-5438 Sentence denotes Declaration of Competing Interest
T36 5439-5609 Sentence denotes The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
T37 5611-5641 Sentence denotes Appendix A Supplementary data
T38 5642-5719 Sentence denotes The following are the Supplementary data to this article:Supplementary data 1
T39 5721-5736 Sentence denotes Acknowledgement
T40 5737-5742 Sentence denotes None.
T41 5743-5750 Sentence denotes Funding
T42 5751-5788 Sentence denotes The work did not receive any funding.
T43 5789-5901 Sentence denotes Appendix A Supplementary data to this article can be found online at https://doi.org/10.1016/j.bbi.2020.05.051.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 4070-4073 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T2 4075-4079 GlycoEpitope denotes GD1a http://www.glycoepitope.jp/epitopes/EP0056
T3 4081-4092 GlycoEpitope denotes GalNac-GD1a http://www.glycoepitope.jp/epitopes/EP0058
T4 4088-4092 GlycoEpitope denotes GD1a http://www.glycoepitope.jp/epitopes/EP0056
T5 4094-4098 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059
T6 4103-4107 GlycoEpitope denotes GQ1b http://www.glycoepitope.jp/epitopes/EP0069
T7 4370-4374 GlycoEpitope denotes GD1a http://www.glycoepitope.jp/epitopes/EP0056