PMC:7234792 / 79-730
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 9 | 16-63 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
| 10 | 65-75 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 11 | 166-176 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 12 | 134-142 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 13 | 151-160 | Disease | denotes | Infection | MESH:D007239 |
| 14 | 498-515 | Disease | denotes | pulmonary disease | MESH:D008171 |
| 15 | 573-581 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 291-314 | Body_part | denotes | lower respiratory tract | http://purl.org/sig/ont/fma/fma45662 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 291-314 | Body_part | denotes | lower respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001558 |
| T2 | 297-314 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T2 | 16-63 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T3 | 16-49 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T4 | 65-73 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T5 | 151-160 | Disease | denotes | Infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T6 | 166-174 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T7 | 498-515 | Disease | denotes | pulmonary disease | http://purl.obolibrary.org/obo/MONDO_0005275 |
| T8 | 573-581 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 104-105 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T4 | 245-247 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
| T5 | 291-314 | http://purl.obolibrary.org/obo/UBERON_0001558 | denotes | lower respiratory tract |
| T6 | 430-432 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
| T7 | 458-459 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T8 | 544-546 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
| T9 | 547-552 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 245-247 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
| T4 | 350-353 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T5 | 416-419 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T6 | 430-432 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
| T9 | 544-546 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
| T12 | 623-626 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 0-651 | Sentence | denotes | The pandemic of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) challenges clinicians with a variety of presentations of COVID-19.1, 2, 3 Infection with SARS-CoV-2 is confirmed by real-time RT-PCR, typically done on nasopharyngeal (NP) swabs or, less commonly, samples from the lower respiratory tract, including bronchoalveolar lavage (BAL).4 Some data suggest that RT-PCR might be more sensitive with BAL than with NP swabs.5 Here, we present a man who developed rapidly progressive pulmonary disease and, following two negative NP tests, was diagnosed with COVID-19 on the basis of bronchoscopic biopsy and BAL after 9 days of illness. |