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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 12-19 Disease denotes seizure MESH:D012640
3 45-65 Disease denotes SARS-CoV-2 infection MESH:C000657245
14 81-91 Species denotes SARS-CoV-2 Tax:2697049
15 430-438 Species denotes patients Tax:9606
16 449-457 Species denotes patients Tax:9606
17 421-429 Disease denotes infected MESH:D007239
18 463-481 Disease denotes SARS-CoV-2 disease MESH:C000657245
19 505-525 Disease denotes respiratory symptoms MESH:D012818
20 651-658 Disease denotes seizure MESH:D012640
21 684-704 Disease denotes SARS-CoV-2 infection MESH:C000657245
22 774-801 Disease denotes novel Coronavirus infection MESH:C000657245
23 919-939 Disease denotes SARS-CoV-2 infection MESH:C000657245
25 4198-4207 Disease denotes pneumonia MESH:D011014
57 1992-1994 Gene denotes μL Gene:4591
58 2154-2157 Gene denotes AST Gene:26503
59 2035-2037 Gene denotes μL Gene:4591
60 1315-1322 Species denotes patient Tax:9606
61 2394-2418 Species denotes Streptococcus pneumoniae Tax:1313
62 2463-2470 Species denotes patient Tax:9606
63 2576-2597 Species denotes Mycoplasma pneumoniae Tax:2104
64 2679-2686 Species denotes patient Tax:9606
65 2836-2843 Species denotes patient Tax:9606
66 3420-3430 Species denotes SARS-CoV-2 Tax:2697049
67 3447-3454 Species denotes patient Tax:9606
68 1627-1635 Chemical denotes steroids MESH:D013256
69 1766-1772 Chemical denotes oxygen MESH:D010100
70 2609-2621 Chemical denotes Azithromycin MESH:D017963
71 3039-3045 Chemical denotes oxygen MESH:D010100
72 3613-3632 Chemical denotes Lopinavir-Ritonavir MESH:C558899
73 1057-1064 Disease denotes seizure MESH:D012640
74 1120-1141 Disease denotes loss of consciousness MESH:D014474
75 1479-1493 Disease denotes conjunctivitis MESH:D003231
76 1523-1528 Disease denotes fever MESH:D005334
77 1868-1882 Disease denotes focal deficits MESH:D009461
78 1916-1928 Disease denotes neutrophilia MESH:C563010
79 2010-2021 Disease denotes lymphopenia MESH:D008231
80 2598-2607 Disease denotes infection MESH:D007239
81 2740-2747 Disease denotes seizure MESH:D012640
82 2767-2776 Disease denotes epileptic MESH:D004827
83 2883-2888 Disease denotes cough MESH:D003371
84 2890-2900 Disease denotes high fever MESH:D005334
85 2906-2925 Disease denotes shortness of breath MESH:D004417
86 2956-2961 Disease denotes fever MESH:D005334
87 3646-3653 Disease denotes seizure MESH:D012640
93 4354-4357 Gene denotes She Gene:126669
94 4400-4403 Gene denotes she Gene:126669
95 4278-4285 Species denotes patient Tax:9606
96 4424-4434 Species denotes SARS-CoV-2 Tax:2697049
97 4386-4395 Disease denotes infection MESH:D007239
121 4492-4502 Species denotes SARS-CoV-2 Tax:2697049
122 4895-4902 Species denotes patient Tax:9606
123 5024-5041 Species denotes novel Coronavirus Tax:2697049
124 5088-5095 Species denotes patient Tax:9606
125 5426-5433 Species denotes patient Tax:9606
126 5467-5477 Species denotes SARS-CoV-2 Tax:2697049
127 5600-5606 Chemical denotes sodium MESH:D012964
128 4533-4552 Disease denotes respiratory disease MESH:D012140
129 4563-4568 Disease denotes cough MESH:D003371
130 4570-4575 Disease denotes fever MESH:D005334
131 4581-4600 Disease denotes shortness of breath MESH:D004417
132 4759-4780 Disease denotes neurological symptoms MESH:D009422
133 4817-4830 Disease denotes muscle damage MESH:D009135
134 4836-4860 Disease denotes cerebrovascular diseases MESH:D002561
135 4926-4933 Disease denotes seizure MESH:D012640
136 4970-4990 Disease denotes SARS-CoV-2 infection MESH:C000657245
137 5113-5128 Disease denotes lymphocytopenia MESH:D008231
138 5205-5225 Disease denotes SARS-CoV-2 infection MESH:C000657245
139 5276-5283 Disease denotes seizure MESH:D012640
140 5294-5321 Disease denotes novel Coronavirus infection MESH:C000657245
141 5348-5357 Disease denotes infection MESH:D007239
142 5409-5417 Disease denotes seizures MESH:D012640
143 5540-5548 Disease denotes seizures MESH:D012640
156 5731-5741 Species denotes SARS-CoV-2 Tax:2697049
157 5863-5870 Species denotes patient Tax:9606
158 6025-6032 Species denotes patient Tax:9606
159 6345-6352 Species denotes patient Tax:9606
160 5815-5820 Disease denotes fever MESH:D005334
161 5825-5839 Disease denotes conjunctivitis MESH:D003231
162 5885-5905 Disease denotes SARS-CoV-2 infection MESH:C000657245
163 6004-6019 Disease denotes cardiac syncope MESH:D006331
164 6067-6081 Disease denotes heart diseases MESH:D006331
165 6142-6149 Disease denotes seizure MESH:D012640
166 6427-6434 Disease denotes seizure MESH:D012640
167 6530-6549 Disease denotes focal abnormalities MESH:D005490
176 6739-6756 Species denotes novel Coronavirus Tax:2697049
177 6923-6933 Species denotes SARS-CoV-2 Tax:2697049
178 6989-6997 Species denotes patients Tax:9606
179 7037-7045 Species denotes patients Tax:9606
180 6621-6629 Disease denotes seizures MESH:D012640
181 6640-6660 Disease denotes SARS-CoV-2 infection MESH:C000657245
182 6710-6731 Disease denotes neurological symptoms MESH:D009422
183 7246-7266 Disease denotes SARS-CoV-2 infection MESH:C000657245
185 8403-8410 Species denotes patient Tax:9606
187 8450-8457 Species denotes patient Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1106-1115 Body_part denotes right arm http://purl.org/sig/ont/fma/fma24895
T2 1233-1243 Body_part denotes right hand http://purl.org/sig/ont/fma/fma9713
T3 1248-1251 Body_part denotes arm http://purl.org/sig/ont/fma/fma24890
T4 1806-1810 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T5 1884-1889 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T6 1956-1972 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T7 1968-1972 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T8 2059-2064 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T9 2223-2227 Body_part denotes Head http://purl.org/sig/ont/fma/fma7154
T10 2264-2269 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T11 2349-2354 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T12 2996-3001 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T13 3112-3117 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T14 3205-3210 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T15 3667-3672 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T16 3681-3686 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T17 3693-3698 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T18 3726-3731 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T19 3782-3787 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T20 3934-3939 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T21 4040-4045 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T22 4098-4103 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T23 4817-4823 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T24 5133-5138 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T25 5487-5495 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T26 5594-5599 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T27 6067-6072 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T28 6229-6234 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T29 6330-6335 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T30 6481-6486 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T31 6500-6505 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T32 7031-7035 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T33 7176-7180 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1112-1115 Body_part denotes arm http://purl.obolibrary.org/obo/UBERON_0001460
T2 1239-1243 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T3 1248-1251 Body_part denotes arm http://purl.obolibrary.org/obo/UBERON_0001460
T4 1884-1889 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T5 1962-1967 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T6 2059-2064 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T7 2223-2227 Body_part denotes Head http://purl.obolibrary.org/obo/UBERON_0000033
T8 2264-2269 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 2349-2354 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T10 2996-3001 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T11 3112-3117 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 3205-3210 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 3667-3672 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 3681-3686 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T15 3693-3698 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T16 3726-3731 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955
T17 3782-3787 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T18 3934-3939 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T19 4040-4045 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T20 4098-4103 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T21 5133-5138 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T22 5594-5599 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T23 6067-6072 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T24 6229-6234 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T25 6330-6335 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T26 6481-6486 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T27 6500-6505 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T28 7031-7035 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T29 7176-7180 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 45-53 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 56-65 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T3 81-89 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 463-471 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 684-692 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 695-704 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 792-801 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 919-927 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 930-939 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 1356-1358 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T11 1384-1386 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T12 1397-1399 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T13 1452-1454 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T14 1479-1493 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T15 1597-1599 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T16 1665-1667 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T17 2010-2021 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T18 2394-2418 Disease denotes Streptococcus pneumoniae http://purl.obolibrary.org/obo/MONDO_0005972
T19 2423-2433 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824
T20 2576-2597 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T21 2598-2607 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 2728-2747 Disease denotes focal motor seizure http://purl.obolibrary.org/obo/MONDO_0006891
T23 3420-3428 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T24 3635-3637 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T25 4198-4207 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T26 4386-4395 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 4424-4432 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 4492-4500 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 4533-4552 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T30 4836-4860 Disease denotes cerebrovascular diseases http://purl.obolibrary.org/obo/MONDO_0011057
T31 4970-4978 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 4981-4990 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T33 5113-5128 Disease denotes lymphocytopenia http://purl.obolibrary.org/obo/MONDO_0003783
T34 5205-5213 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 5216-5225 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 5312-5321 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 5348-5357 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 5467-5475 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 5496-5510 Disease denotes storm syndrome http://purl.obolibrary.org/obo/MONDO_0008496
T40 5731-5739 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 5825-5839 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T42 5885-5893 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 5896-5905 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T44 6067-6081 Disease denotes heart diseases http://purl.obolibrary.org/obo/MONDO_0005267
T45 6083-6085 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T46 6161-6163 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T47 6194-6196 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T48 6640-6648 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 6651-6660 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T50 6923-6931 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 7246-7254 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 7257-7266 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 162-167 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T2 311-312 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 351-354 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 401-402 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 566-571 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 629-630 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 976-980 http://purl.obolibrary.org/obo/CLO_0001599 denotes a 54
T8 1048-1049 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1112-1115 http://www.ebi.ac.uk/efo/EFO_0001410 denotes arm
T10 1166-1167 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1248-1251 http://www.ebi.ac.uk/efo/EFO_0001410 denotes arm
T12 1901-1906 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T13 1962-1967 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T14 1968-1972 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T15 2223-2227 http://purl.obolibrary.org/obo/UBERON_0000033 denotes Head
T16 2223-2227 http://www.ebi.ac.uk/efo/EFO_0000964 denotes Head
T17 2264-2269 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T18 2283-2284 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2343-2347 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T20 2384-2389 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T21 2706-2707 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 2949-2950 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 2996-3001 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T24 2996-3001 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T25 2996-3001 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T26 2996-3001 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T27 3061-3063 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T28 3070-3075 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T29 3112-3117 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T30 3205-3210 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T31 3667-3672 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T32 3681-3686 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T33 3693-3698 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T34 3693-3698 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T35 3726-3731 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T36 3726-3731 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T37 3772-3773 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 3782-3787 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T39 3828-3829 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 3860-3861 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T41 3934-3939 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T42 4040-4045 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T43 4098-4103 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T44 4404-4410 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T45 4481-4491 http://purl.obolibrary.org/obo/UBERON_0001456 denotes facing the
T46 4531-4532 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 4618-4621 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T48 4700-4701 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T49 4714-4715 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 4808-4823 http://purl.obolibrary.org/obo/UBERON_0001134 denotes skeletal muscle
T51 4808-4823 http://purl.obolibrary.org/obo/UBERON_0014892 denotes skeletal muscle
T52 4808-4823 http://www.ebi.ac.uk/efo/EFO_0000888 denotes skeletal muscle
T53 4883-4884 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 4893-4894 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 4918-4919 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 4937-4938 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 5133-5138 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T58 5742-5749 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T59 6002-6003 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 6067-6072 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T61 6067-6072 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T62 6067-6072 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T63 6067-6072 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T64 6118-6126 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T65 6168-6169 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 6229-6234 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T67 6229-6234 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T68 6328-6329 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 6330-6335 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T70 6330-6335 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T71 6481-6486 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T72 6481-6486 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T73 6500-6505 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T74 6500-6505 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T75 6590-6591 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 8087-8090 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1616-1626 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T2 1627-1635 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T3 1727-1731 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T4 1766-1772 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T5 1937-1939 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T6 1996-1998 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T7 2039-2041 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T8 2065-2071 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T9 2087-2089 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T10 2139-2141 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T11 2154-2157 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T12 2204-2206 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T13 2376-2383 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T14 2629-2631 Chemical denotes QD http://purl.obolibrary.org/obo/CHEBI_50853
T15 3039-3045 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T16 3594-3603 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T17 3613-3622 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T18 3712-3715 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T19 3886-3889 Chemical denotes EEG http://purl.obolibrary.org/obo/CHEBI_73494
T20 5600-5606 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-65 Sentence denotes First motor seizure as presenting symptom of SARS-CoV-2 infection
T2 67-76 Sentence denotes Dear Sir,
T3 77-210 Sentence denotes The SARS-CoV-2 pandemic is currently causing concern in the medical community as the virus is rapidly spreading around the world [1].
T4 211-439 Sentence denotes Since its identification in late December 2019 in China, the epidemiological picture is changing on a daily basis: in the last month, Italy has been the center of the European outbreak with a growing number of infected patients.
T5 440-618 Sentence denotes Although patients with SARS-CoV-2 disease typically present with respiratory symptoms, pieces of information suggest that the virus may also have neurological manifestations [2].
T6 619-705 Sentence denotes We report a case of first motor seizure as presenting symptom of SARS-CoV-2 infection.
T7 706-940 Sentence denotes The present case further underscores that initial manifestations of novel Coronavirus infection might be non-specific and it highlights the need for physicians to consider potential neurological manifestations of SARS-CoV-2 infection.
T8 942-953 Sentence denotes Case report
T9 954-1142 Sentence denotes On February 28, 2020, a 54-year-old firefighter was admitted to our emergency room (ER) after a single seizure characterized by clonic movements in the right arm and loss of consciousness.
T10 1143-1378 Sentence denotes His relatives reported a sudden onset of involuntary and rhythmic movements involving the right hand and arm lasting about 1 or 2 min; after that, it was reported that the patient appeared generally stiffened and he lost consciousness.
T11 1379-1430 Sentence denotes When he awakened, he was confused for about 30 min.
T12 1431-1546 Sentence denotes At the ER admission, he reported suffering from conjunctivitis in the last 10 days and mild fever in the past week.
T13 1547-1736 Sentence denotes He had no remote medical or neurological history; he had been taking ophthalmic steroids during the previous days but he was not under regular medications; there was no history of drug use.
T14 1737-1883 Sentence denotes Vital parameters, peripheral oxygen saturation, and EKG were normal (body temperature 36.5 °C); neurological examination showed no focal deficits.
T15 1884-2222 Sentence denotes Serum laboratory tests revealed neutrophilia (85.5%, NR 40–75%), normal white blood cell count (6.38 × 1000/μL, NR 4.0–10.0), lymphopenia (0.69 × 1000/μL, NR 0.8–4.0), normal serum sodium (140.8 mmol/L, NR 132.0–146.0), slightly elevated CRP (1.29 mg/dL, NR 0–0.5), and AST and ALT enzymes (57 and 59 UI/L respectively, NR 2–40 and 4–49).
T16 2223-2263 Sentence denotes Head CT scan was unremarkable (Fig. 1a).
T17 2264-2331 Sentence denotes Chest X-ray showed a single lingular disventilatory band (Fig. 1b).
T18 2332-2458 Sentence denotes Urinalysis test, urine culture, and urinary antigen tests for Streptococcus pneumoniae and Legionella pneumophila were normal.
T19 2459-2555 Sentence denotes The patient’s electroencephalogram recorded the following day showed no abnormalities (Fig. 1c).
T20 2556-2658 Sentence denotes In the suspicion of Mycoplasma pneumoniae infection, Azithromycin 500 mg QD for 3 days was prescribed.
T21 2659-2805 Sentence denotes On February 29, the patient was discharged and a diagnosis of “first focal motor seizure” was made; no anti-epileptic medications were prescribed.
T22 2806-2962 Sentence denotes After 4 days, on March 4, the patient was admitted to the ER again reporting cough, high fever, and shortness of breath; his daughter also had a high fever.
T23 2963-3065 Sentence denotes His temperature was 38.5 °C, the heart rate was 100 bpm, and the peripheral oxygen saturation was 94%.
T24 3066-3272 Sentence denotes Lab tests showed raised inflammatory markers; chest X-ray pointed out the appearance of mild bilateral perihilar consolidations (Fig. 1d); chest HR-CT scan showed bilateral ground-glass opacities (Fig. 1e).
T25 3273-3442 Sentence denotes Based on epidemiological data and according to the government guidelines, two nasopharyngeal swabs were obtained and were found to be positive for SARS-CoV-2 on qRT-PCR.
T26 3443-3552 Sentence denotes The patient was hospitalized in the Intermediate Care Unit and non-invasive ventilation (NIV) was undertaken.
T27 3553-3659 Sentence denotes He completely recovered after 2 weeks of antiviral therapy (Lopinavir-Ritonavir); he remains seizure-free.
T28 3660-3725 Sentence denotes Fig. 1 Chest x-rays, chest HRCT, brain CT scan, and EEG findings.
T29 3726-3775 Sentence denotes Brain CT scan did not show any abnormalities (a).
T30 3776-3863 Sentence denotes First chest x-ray performed on February 28th showed a lingular disventilatory band (b).
T31 3864-3926 Sentence denotes Electroencephalogram (EEG) did not show any abnormalities (c).
T32 3927-4039 Sentence denotes Second chest x-ray performed on March 4th showed the appearance of mild bilateral peri-hilar consolidations (d).
T33 4040-4211 Sentence denotes Chest HRCT scan carried out on the same day of the second chest x-ray revealed bilateral peripheral ground-glass opacities (GGO) compatible with interstitial pneumonia (e)
T34 4212-4353 Sentence denotes The consultant neurologist who had been in close contact with the patient during the first ER admission was isolated for clinical monitoring.
T35 4354-4435 Sentence denotes She had no signs or symptoms of infection and she tested negative for SARS-CoV-2.
T36 4437-4447 Sentence denotes Discussion
T37 4448-4512 Sentence denotes Europe and the USA are currently facing the SARS-CoV-2 pandemic.
T38 4513-4605 Sentence denotes This is primarily a respiratory disease marked by cough, fever, and shortness of breath [3].
T39 4606-4699 Sentence denotes However, it has been suggested that it might have neurologic complications in some instances.
T40 4700-4865 Sentence denotes A report from a Chinese hospital pointed out that frequent neurological symptoms are altered consciousness, skeletal muscle damage, and cerebrovascular diseases [2].
T41 4866-4991 Sentence denotes We are reporting a case of a patient suffering from a first seizure as a possible presenting symptom of SARS-CoV-2 infection.
T42 4992-5230 Sentence denotes The initial presentation of the novel Coronavirus can be non-specific [3]: retrospectively, the patient’s initial exams (lymphocytopenia and chest X-ray disventilatory band) were consistent with manifestations of SARS-CoV-2 infection [3].
T43 5231-5434 Sentence denotes Considering the temporal association between seizure onset and novel Coronavirus infection, we hypothesize that this infection might have been responsible for the development of seizures in this patient.
T44 5435-5684 Sentence denotes We speculate that the suggested SARS-CoV-2-induced “cytokine storm syndrome” [4] may have contributed to seizures onset, considering the normality of both the serum sodium level and the peripheral saturation at the time of first hospitalization [5].
T45 5685-5773 Sentence denotes One limitation of this case is the absence of SARS-CoV-2 testing on the first admission.
T46 5774-5955 Sentence denotes Considering the previous history of mild fever and conjunctivitis, it is likely that the patient suffered from SARS-CoV-2 infection even at the time of the first hospital admission.
T47 5956-6292 Sentence denotes Secondly, the differential diagnosis included a cardiac syncope: our patient, however, did not suffer from any heart diseases, he was not performing any physical activity at the time of seizure onset, and he had a long recovery time when he awakened; moreover, his EKG and blood pressure were normal during the first hospital admission.
T48 6293-6340 Sentence denotes Finally, we have not yet performed a brain MRI.
T49 6341-6550 Sentence denotes The patient’s neurological examination, however, was normal both before and after the seizure with no clinical deficits possibly related to brain lesions; the brain CT, moreover, showed no focal abnormalities.
T50 6551-6857 Sentence denotes In conclusion, this case only suggests a possible association between seizures onset and SARS-CoV-2 infection and it points out the need to consider potential neurological symptoms of the novel Coronavirus; further cases with epidemiological data will clarify if the association is accidental or causative.
T51 6858-6961 Sentence denotes This case also highlights the need for clinicians to be alert to SARS-CoV-2 neurological complications.
T52 6962-7019 Sentence denotes This is important both for patients and for neurologists.
T53 7020-7299 Sentence denotes On the one hand, patients need to be quickly and accurately diagnosed in order to avoid delayed diagnoses and to prevent further transmission; on the other hand, neurologists must be protected from the risk of contracting the SARS-CoV-2 infection even in non-specific situations.
T54 7301-7317 Sentence denotes Publisher’s note
T55 7318-7436 Sentence denotes Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
T56 7438-7460 Sentence denotes Authors’ contributions
T57 7461-7478 Sentence denotes • Antonio Fasano:
T58 7479-7618 Sentence denotes Design and conceptualized study; major role in the acquisition of data; analyzed the data; drafted the manuscript for intellectual content.
T59 7619-7642 Sentence denotes • Francesco Cavallieri:
T60 7643-7752 Sentence denotes Major role in the acquisition of data; interpreted the data; revised the manuscript for intellectual content.
T61 7753-7768 Sentence denotes • Elena Canali:
T62 7769-7860 Sentence denotes Acquisition of data; interpreted the data; revised the manuscript for intellectual content.
T63 7861-7879 Sentence denotes • Franco Valzania:
T64 7880-7983 Sentence denotes Design and conceptualized study; interpreted the data; revised the manuscript for intellectual content.
T65 7984-8028 Sentence denotes All authors have approved the final article.
T66 8030-8047 Sentence denotes Data availability
T67 8048-8139 Sentence denotes Dr. Fasano as the corresponding author has full access to all the data (data transparency).
T68 8141-8174 Sentence denotes Compliance with ethical standards
T69 8176-8196 Sentence denotes Conflict of Interest
T70 8197-8256 Sentence denotes The authors declare that they have no conflict of interest.
T71 8258-8274 Sentence denotes Ethical approval
T72 8275-8290 Sentence denotes Not applicable.
T73 8292-8314 Sentence denotes Consent to participate
T74 8315-8330 Sentence denotes Not applicable.
T75 8332-8355 Sentence denotes Consent for publication
T76 8356-8427 Sentence denotes Written informed consent was obtained from the patient for publication.
T77 8429-8445 Sentence denotes Informed consent
T78 8446-8505 Sentence denotes The patient gave his informed consent for case description.
T79 8507-8524 Sentence denotes Code availability
T80 8525-8540 Sentence denotes Not applicable.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 6-19 Phenotype denotes motor seizure http://purl.obolibrary.org/obo/HP_0020219
T2 645-658 Phenotype denotes motor seizure http://purl.obolibrary.org/obo/HP_0020219
T3 1057-1064 Phenotype denotes seizure http://purl.obolibrary.org/obo/HP_0001250
T4 1120-1141 Phenotype denotes loss of consciousness http://purl.obolibrary.org/obo/HP_0007185
T5 1479-1493 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T6 1518-1528 Phenotype denotes mild fever http://purl.obolibrary.org/obo/HP_0011134
T7 1916-1928 Phenotype denotes neutrophilia http://purl.obolibrary.org/obo/HP_0011897
T8 2010-2021 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T9 2113-2125 Phenotype denotes elevated CRP http://purl.obolibrary.org/obo/HP_0011227
T10 2408-2418 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T11 2587-2597 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T12 2728-2747 Phenotype denotes focal motor seizure http://purl.obolibrary.org/obo/HP_0011153
T13 2883-2888 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T14 2895-2900 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T15 2906-2925 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T16 2956-2961 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 3646-3653 Phenotype denotes seizure http://purl.obolibrary.org/obo/HP_0001250
T18 4198-4207 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T19 4563-4568 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T20 4570-4575 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T21 4581-4600 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T22 4926-4933 Phenotype denotes seizure http://purl.obolibrary.org/obo/HP_0001250
T23 5113-5128 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T24 5276-5283 Phenotype denotes seizure http://purl.obolibrary.org/obo/HP_0001250
T25 5409-5417 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250
T26 5487-5501 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T27 5540-5548 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250
T28 5810-5820 Phenotype denotes mild fever http://purl.obolibrary.org/obo/HP_0011134
T29 5825-5839 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T30 6012-6019 Phenotype denotes syncope http://purl.obolibrary.org/obo/HP_0001279
T31 6142-6149 Phenotype denotes seizure http://purl.obolibrary.org/obo/HP_0001250
T32 6427-6434 Phenotype denotes seizure http://purl.obolibrary.org/obo/HP_0001250
T33 6621-6629 Phenotype denotes seizures http://purl.obolibrary.org/obo/HP_0001250

2_test

Id Subject Object Predicate Lexical cue
32417987-32109013-75885144 4602-4603 32109013 denotes 3
32417987-32109013-75885145 5063-5064 32109013 denotes 3
32417987-32109013-75885146 5227-5228 32109013 denotes 3
32417987-32192578-75885147 5513-5514 32192578 denotes 4
32417987-31520167-75885148 5681-5682 31520167 denotes 5