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PMC:7228307 / 58174-58419 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1188 150-154 Gene denotes OX40 Gene:7293
1189 227-230 Gene denotes DR4 Gene:3126
1190 232-235 Gene denotes DR5 Gene:8795
1191 143-148 Gene denotes 4‐1BB Gene:3604
1192 189-194 Disease denotes death MESH:D003643
1193 208-214 Disease denotes cancer MESH:D009369

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T449 95-119 Body_part denotes antigen‐presenting cells http://purl.org/sig/ont/fma/fma273565
T450 114-119 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T451 125-130 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T452 215-220 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T111 208-214 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T974 114-119 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T975 123-130 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T976 215-220 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T977 242-245 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T38447 82-91 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T65735 95-102 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T248 114-119 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T249 125-130 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T250 215-220 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T120 0-9 RB denotes Typically
T121 9-10 -COMMA- denotes ,
T122 11-15 DT denotes this
T123 16-18 VBZ denotes is
T124 19-21 TO denotes to
T125 22-28 CC denotes either
T126 29-36 VB denotes enhance
T127 37-46 NN denotes antitumor
T128 47-55 NN denotes immunity
T129 56-58 IN denotes by
T130 59-67 VBG denotes engaging
T131 68-81 JJ denotes costimulatory
T132 82-91 NNS denotes molecules
T133 92-94 IN denotes on
T134 95-113 JJ denotes antigen‐presenting
T135 114-119 NNS denotes cells
T136 120-122 CC denotes or
T137 123-124 NN denotes T
T138 125-130 NNS denotes cells
T139 131-132 -LRB- denotes (
T140 132-136 FW denotes i.e.
T141 137-141 NN denotes CD40
T142 141-142 -COMMA- denotes ,
T143 143-148 NN denotes 4‐1BB
T144 148-149 -COMMA- denotes ,
T145 150-154 NN denotes OX40
T146 154-155 -RRB- denotes )
T147 156-158 CC denotes or
T148 159-166 VB denotes promote
T149 167-176 NN denotes apoptosis
T150 177-179 IN denotes by
T151 180-188 VBG denotes engaging
T152 189-194 NN denotes death
T153 195-204 NNS denotes receptors
T154 205-207 IN denotes on
T155 208-214 NN denotes cancer
T156 215-220 NNS denotes cells
T157 221-222 -LRB- denotes (
T158 222-226 FW denotes i.e.
T159 227-230 NN denotes DR4
T160 230-231 -COMMA- denotes ,
T161 232-235 NN denotes DR5
T162 235-236 -COMMA- denotes ,
T163 237-240 NN denotes Fas
T164 240-241 -RRB- denotes )
R122 T123 T120 arg1Of is,Typically
R123 T123 T121 arg1Of is,","
R124 T122 T123 arg1Of this,is
R125 T147 T123 arg2Of or,is
R126 T147 T124 arg1Of or,to
R127 T147 T125 arg1Of or,either
R128 T128 T126 arg2Of immunity,enhance
R129 T128 T127 arg1Of immunity,antitumor
R130 T126 T129 arg1Of enhance,by
R131 T130 T129 arg2Of engaging,by
R132 T132 T130 arg2Of molecules,engaging
R133 T132 T131 arg1Of molecules,costimulatory
R134 T132 T133 arg1Of molecules,on
R135 T136 T133 arg2Of or,on
R136 T135 T134 arg1Of cells,antigen‐presenting
R137 T135 T136 arg1Of cells,or
R138 T138 T136 arg2Of cells,or
R139 T138 T137 arg1Of cells,T
R140 T136 T139 arg1Of or,(
R141 T142 T139 arg2Of ",",(
R142 T146 T139 arg3Of ),(
R143 T142 T140 arg1Of ",",i.e.
R144 T141 T142 arg1Of CD40,","
R145 T143 T142 arg2Of 4‐1BB,","
R146 T142 T144 arg1Of ",",","
R147 T145 T144 arg2Of OX40,","
R148 T126 T147 arg1Of enhance,or
R149 T148 T147 arg2Of promote,or
R150 T149 T148 arg2Of apoptosis,promote
R151 T148 T150 arg1Of promote,by
R152 T151 T150 arg2Of engaging,by
R153 T153 T151 arg2Of receptors,engaging
R154 T153 T152 arg1Of receptors,death
R155 T153 T154 arg1Of receptors,on
R156 T156 T154 arg2Of cells,on
R157 T156 T155 arg1Of cells,cancer
R158 T156 T157 arg1Of cells,(
R159 T159 T157 arg2Of DR4,(
R160 T164 T157 arg3Of ),(
R161 T159 T158 arg1Of DR4,i.e.
R162 T159 T160 arg1Of DR4,","
R163 T161 T160 arg2Of DR5,","
R164 T159 T162 arg1Of DR4,","
R165 T163 T162 arg2Of Fas,","

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
1188 150-154 Gene denotes OX40 Gene:7293
1189 227-230 Gene denotes DR4 Gene:3126
1190 232-235 Gene denotes DR5 Gene:8795
1191 143-148 Gene denotes 4‐1BB Gene:3604
1192 189-194 Disease denotes death MESH:D003643
1193 208-214 Disease denotes cancer MESH:D009369

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T323 0-245 Sentence denotes Typically, this is to either enhance antitumor immunity by engaging costimulatory molecules on antigen‐presenting cells or T cells (i.e. CD40, 4‐1BB, OX40) or promote apoptosis by engaging death receptors on cancer cells (i.e. DR4, DR5, Fas).116

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T738 68-91 Protein denotes costimulatory molecules https://www.uniprot.org/uniprot/Q9BXR1|https://www.uniprot.org/uniprot/Q8VE98|https://www.uniprot.org/uniprot/Q8NCB6|https://www.uniprot.org/uniprot/Q8NC34|https://www.uniprot.org/uniprot/Q8NBI8|https://www.uniprot.org/uniprot/Q7TPB4|https://www.uniprot.org/uniprot/Q6UXI2|https://www.uniprot.org/uniprot/Q6P5Y4|https://www.uniprot.org/uniprot/Q5ZPR3
T747 137-141 Protein denotes CD40 https://www.uniprot.org/uniprot/Q9BYU0|https://www.uniprot.org/uniprot/Q99NE3|https://www.uniprot.org/uniprot/Q99NE2|https://www.uniprot.org/uniprot/Q99NE1|https://www.uniprot.org/uniprot/Q99NE0|https://www.uniprot.org/uniprot/Q8SQ34|https://www.uniprot.org/uniprot/Q8K2X6|https://www.uniprot.org/uniprot/Q86YK5|https://www.uniprot.org/uniprot/Q7YRL5|https://www.uniprot.org/uniprot/Q7M4Q8|https://www.uniprot.org/uniprot/Q5U007|https://www.uniprot.org/uniprot/Q5JY15|https://www.uniprot.org/uniprot/Q542B1|https://www.uniprot.org/uniprot/Q53GN5|https://www.uniprot.org/uniprot/Q3ZTK5|https://www.uniprot.org/uniprot/Q3UBH3|https://www.uniprot.org/uniprot/Q3U7C9|https://www.uniprot.org/uniprot/Q3U799|https://www.uniprot.org/uniprot/Q3TSL2|https://www.uniprot.org/uniprot/Q3TS33|https://www.uniprot.org/uniprot/Q3LRP1|https://www.uniprot.org/uniprot/Q28203|https://www.uniprot.org/uniprot/P27512|https://www.uniprot.org/uniprot/P25942|https://www.uniprot.org/uniprot/E1P5S9|https://www.uniprot.org/uniprot/A7YWS9

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T448 95-119 Body_part denotes antigen‐presenting cells http://purl.org/sig/ont/fma/fma273565
T449 114-119 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T450 125-130 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T451 215-220 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T133 167-176 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T134 167-176 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T135 189-194 http://purl.obolibrary.org/obo/GO_0016265 denotes death

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T48 208-214 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T43 208-214 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T133 167-176 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T134 167-176 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T133 167-176 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T134 167-176 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T323 0-245 Sentence denotes Typically, this is to either enhance antitumor immunity by engaging costimulatory molecules on antigen‐presenting cells or T cells (i.e. CD40, 4‐1BB, OX40) or promote apoptosis by engaging death receptors on cancer cells (i.e. DR4, DR5, Fas).116

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T43 208-214 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664