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PMC:7228307 / 58168-58421 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1188 156-160 Gene denotes OX40 Gene:7293
1189 233-236 Gene denotes DR4 Gene:3126
1190 238-241 Gene denotes DR5 Gene:8795
1191 149-154 Gene denotes 4‐1BB Gene:3604
1192 195-200 Disease denotes death MESH:D003643
1193 214-220 Disease denotes cancer MESH:D009369

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T449 101-125 Body_part denotes antigen‐presenting cells http://purl.org/sig/ont/fma/fma273565
T450 120-125 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T451 131-136 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T452 221-226 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T111 214-220 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T974 120-125 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T975 129-136 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T976 221-226 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T977 248-251 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T38447 88-97 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T65735 101-108 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T248 120-125 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T249 131-136 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T250 221-226 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T120 6-15 RB denotes Typically
T121 15-16 -COMMA- denotes ,
T122 17-21 DT denotes this
T123 22-24 VBZ denotes is
T124 25-27 TO denotes to
T125 28-34 CC denotes either
T126 35-42 VB denotes enhance
T127 43-52 NN denotes antitumor
T128 53-61 NN denotes immunity
T129 62-64 IN denotes by
T130 65-73 VBG denotes engaging
T131 74-87 JJ denotes costimulatory
T132 88-97 NNS denotes molecules
T133 98-100 IN denotes on
T134 101-119 JJ denotes antigen‐presenting
T135 120-125 NNS denotes cells
T136 126-128 CC denotes or
T137 129-130 NN denotes T
T138 131-136 NNS denotes cells
T139 137-138 -LRB- denotes (
T140 138-142 FW denotes i.e.
T141 143-147 NN denotes CD40
T142 147-148 -COMMA- denotes ,
T143 149-154 NN denotes 4‐1BB
T144 154-155 -COMMA- denotes ,
T145 156-160 NN denotes OX40
T146 160-161 -RRB- denotes )
T147 162-164 CC denotes or
T148 165-172 VB denotes promote
T149 173-182 NN denotes apoptosis
T150 183-185 IN denotes by
T151 186-194 VBG denotes engaging
T152 195-200 NN denotes death
T153 201-210 NNS denotes receptors
T154 211-213 IN denotes on
T155 214-220 NN denotes cancer
T156 221-226 NNS denotes cells
T157 227-228 -LRB- denotes (
T158 228-232 FW denotes i.e.
T159 233-236 NN denotes DR4
T160 236-237 -COMMA- denotes ,
T161 238-241 NN denotes DR5
T162 241-242 -COMMA- denotes ,
T163 243-246 NN denotes Fas
T164 246-247 -RRB- denotes )
R122 T123 T120 arg1Of is,Typically
R123 T123 T121 arg1Of is,","
R124 T122 T123 arg1Of this,is
R125 T147 T123 arg2Of or,is
R126 T147 T124 arg1Of or,to
R127 T147 T125 arg1Of or,either
R128 T128 T126 arg2Of immunity,enhance
R129 T128 T127 arg1Of immunity,antitumor
R130 T126 T129 arg1Of enhance,by
R131 T130 T129 arg2Of engaging,by
R132 T132 T130 arg2Of molecules,engaging
R133 T132 T131 arg1Of molecules,costimulatory
R134 T132 T133 arg1Of molecules,on
R135 T136 T133 arg2Of or,on
R136 T135 T134 arg1Of cells,antigen‐presenting
R137 T135 T136 arg1Of cells,or
R138 T138 T136 arg2Of cells,or
R139 T138 T137 arg1Of cells,T
R140 T136 T139 arg1Of or,(
R141 T142 T139 arg2Of ",",(
R142 T146 T139 arg3Of ),(
R143 T142 T140 arg1Of ",",i.e.
R144 T141 T142 arg1Of CD40,","
R145 T143 T142 arg2Of 4‐1BB,","
R146 T142 T144 arg1Of ",",","
R147 T145 T144 arg2Of OX40,","
R148 T126 T147 arg1Of enhance,or
R149 T148 T147 arg2Of promote,or
R150 T149 T148 arg2Of apoptosis,promote
R151 T148 T150 arg1Of promote,by
R152 T151 T150 arg2Of engaging,by
R153 T153 T151 arg2Of receptors,engaging
R154 T153 T152 arg1Of receptors,death
R155 T153 T154 arg1Of receptors,on
R156 T156 T154 arg2Of cells,on
R157 T156 T155 arg1Of cells,cancer
R158 T156 T157 arg1Of cells,(
R159 T159 T157 arg2Of DR4,(
R160 T164 T157 arg3Of ),(
R161 T159 T158 arg1Of DR4,i.e.
R162 T159 T160 arg1Of DR4,","
R163 T161 T160 arg2Of DR5,","
R164 T159 T162 arg1Of DR4,","
R165 T163 T162 arg2Of Fas,","

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
1188 156-160 Gene denotes OX40 Gene:7293
1189 233-236 Gene denotes DR4 Gene:3126
1190 238-241 Gene denotes DR5 Gene:8795
1191 149-154 Gene denotes 4‐1BB Gene:3604
1192 195-200 Disease denotes death MESH:D003643
1193 214-220 Disease denotes cancer MESH:D009369

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T323 6-251 Sentence denotes Typically, this is to either enhance antitumor immunity by engaging costimulatory molecules on antigen‐presenting cells or T cells (i.e. CD40, 4‐1BB, OX40) or promote apoptosis by engaging death receptors on cancer cells (i.e. DR4, DR5, Fas).116

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T738 74-97 Protein denotes costimulatory molecules https://www.uniprot.org/uniprot/Q9BXR1|https://www.uniprot.org/uniprot/Q8VE98|https://www.uniprot.org/uniprot/Q8NCB6|https://www.uniprot.org/uniprot/Q8NC34|https://www.uniprot.org/uniprot/Q8NBI8|https://www.uniprot.org/uniprot/Q7TPB4|https://www.uniprot.org/uniprot/Q6UXI2|https://www.uniprot.org/uniprot/Q6P5Y4|https://www.uniprot.org/uniprot/Q5ZPR3
T747 143-147 Protein denotes CD40 https://www.uniprot.org/uniprot/Q9BYU0|https://www.uniprot.org/uniprot/Q99NE3|https://www.uniprot.org/uniprot/Q99NE2|https://www.uniprot.org/uniprot/Q99NE1|https://www.uniprot.org/uniprot/Q99NE0|https://www.uniprot.org/uniprot/Q8SQ34|https://www.uniprot.org/uniprot/Q8K2X6|https://www.uniprot.org/uniprot/Q86YK5|https://www.uniprot.org/uniprot/Q7YRL5|https://www.uniprot.org/uniprot/Q7M4Q8|https://www.uniprot.org/uniprot/Q5U007|https://www.uniprot.org/uniprot/Q5JY15|https://www.uniprot.org/uniprot/Q542B1|https://www.uniprot.org/uniprot/Q53GN5|https://www.uniprot.org/uniprot/Q3ZTK5|https://www.uniprot.org/uniprot/Q3UBH3|https://www.uniprot.org/uniprot/Q3U7C9|https://www.uniprot.org/uniprot/Q3U799|https://www.uniprot.org/uniprot/Q3TSL2|https://www.uniprot.org/uniprot/Q3TS33|https://www.uniprot.org/uniprot/Q3LRP1|https://www.uniprot.org/uniprot/Q28203|https://www.uniprot.org/uniprot/P27512|https://www.uniprot.org/uniprot/P25942|https://www.uniprot.org/uniprot/E1P5S9|https://www.uniprot.org/uniprot/A7YWS9

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T448 101-125 Body_part denotes antigen‐presenting cells http://purl.org/sig/ont/fma/fma273565
T449 120-125 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T450 131-136 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T451 221-226 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T133 173-182 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T134 173-182 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T135 195-200 http://purl.obolibrary.org/obo/GO_0016265 denotes death

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T48 214-220 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T43 214-220 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T133 173-182 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T134 173-182 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T133 173-182 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T134 173-182 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T323 6-251 Sentence denotes Typically, this is to either enhance antitumor immunity by engaging costimulatory molecules on antigen‐presenting cells or T cells (i.e. CD40, 4‐1BB, OX40) or promote apoptosis by engaging death receptors on cancer cells (i.e. DR4, DR5, Fas).116

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T43 214-220 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664