PMC:7228307 / 2471-9469
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 35 | 325-346 | Disease | denotes | inflammatory diseases | MESH:D007249 |
| 36 | 359-366 | Disease | denotes | cancers | MESH:D009369 |
| 37 | 397-409 | Disease | denotes | malignancies | MESH:D009369 |
| 42 | 1463-1467 | Gene | denotes | FcγR | Gene:2213 |
| 43 | 831-849 | Disease | denotes | autoimmune disease | MESH:D001327 |
| 44 | 892-901 | Disease | denotes | infection | MESH:D007239 |
| 45 | 929-936 | Disease | denotes | allergy | MESH:D004342 |
| 48 | 2000-2004 | Gene | denotes | FcγR | Gene:2213 |
| 49 | 1788-1792 | Gene | denotes | FcγR | Gene:2213 |
| 58 | 2503-2510 | Gene | denotes | FcγRIIb | Gene:2213 |
| 59 | 3016-3023 | Gene | denotes | FcγRIIb | Gene:2213 |
| 60 | 2672-2676 | Gene | denotes | FcγR | Gene:2213 |
| 61 | 2215-2219 | Gene | denotes | FcγR | Gene:2213 |
| 62 | 2073-2077 | Gene | denotes | FcγR | Gene:2213 |
| 63 | 3050-3062 | Species | denotes | participants | Tax:9606 |
| 64 | 2571-2579 | Chemical | denotes | tyrosine | MESH:D014443 |
| 65 | 2322-2334 | Disease | denotes | cytotoxicity | MESH:D064420 |
| 84 | 3417-3425 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 85 | 3580-3588 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 86 | 3808-3815 | Gene | denotes | FcγRIIb | Gene:2213 |
| 87 | 4109-4116 | Gene | denotes | FcγRIIb | Gene:2213 |
| 88 | 4550-4557 | Gene | denotes | FcγRIIb | Gene:2213 |
| 89 | 3940-3944 | Gene | denotes | FcγR | Gene:2213 |
| 90 | 3567-3571 | Gene | denotes | FcγR | Gene:2213 |
| 91 | 3318-3322 | Gene | denotes | FcγR | Gene:2213 |
| 92 | 4663-4667 | Gene | denotes | FcγR | Gene:2213 |
| 93 | 4155-4162 | Gene | denotes | FcγRIIb | Gene:2213 |
| 94 | 4980-4983 | Gene | denotes | BCR | Gene:613 |
| 95 | 3593-3600 | Gene | denotes | FcγRIIa | Gene:2212 |
| 96 | 3836-3844 | Chemical | denotes | tyrosine | MESH:D014443 |
| 97 | 4178-4186 | Chemical | denotes | tyrosine | MESH:D014443 |
| 98 | 4278-4282 | Chemical | denotes | ITAM | |
| 99 | 3400-3412 | Disease | denotes | cytotoxicity | MESH:D064420 |
| 100 | 4439-4442 | Disease | denotes | APC | MESH:D011125 |
| 101 | 4953-4965 | Disease | denotes | cytotoxicity | MESH:D064420 |
| 119 | 5291-5299 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 120 | 5392-5400 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 121 | 5402-5409 | Gene | denotes | FcγRIIa | Gene:2212 |
| 122 | 5411-5416 | Gene | denotes | FcγRI | Gene:2214 |
| 123 | 5488-5493 | Gene | denotes | FcγRI | Gene:2214 |
| 124 | 5495-5503 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 125 | 5634-5637 | Gene | denotes | BCR | Gene:613 |
| 126 | 5703-5710 | Gene | denotes | FcγRIIb | Gene:2213 |
| 127 | 5771-5778 | Gene | denotes | FcγRIIb | Gene:2213 |
| 128 | 6016-6023 | Gene | denotes | FcγRIIb | Gene:2213 |
| 129 | 6030-6037 | Gene | denotes | FcγRIIa | Gene:2212 |
| 130 | 6039-6044 | Gene | denotes | FcγRI | Gene:2214 |
| 131 | 5990-5994 | Gene | denotes | FcγR | Gene:2213 |
| 132 | 5668-5672 | Gene | denotes | FcγR | Gene:2213 |
| 133 | 5120-5124 | Gene | denotes | FcγR | Gene:2213 |
| 134 | 5479-5486 | Gene | denotes | FcγRIIa | Gene:2212 |
| 135 | 5246-5258 | Disease | denotes | cytotoxicity | MESH:D064420 |
| 137 | 5051-5055 | Gene | denotes | FcγR | Gene:2213 |
| 140 | 6046-6049 | Gene | denotes | BCR | Gene:613 |
| 141 | 6089-6097 | Chemical | denotes | tyrosine | MESH:D014443 |
| 143 | 6130-6134 | Gene | denotes | FcγR | Gene:2213 |
| 145 | 6285-6293 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 150 | 6843-6847 | Gene | denotes | FcRn | Gene:2217 |
| 151 | 6972-6988 | Gene | denotes | Fc receptor‐like | Gene:84824 |
| 152 | 6642-6646 | Gene | denotes | FcγR | Gene:2213 |
| 153 | 6626-6631 | Species | denotes | human | Tax:9606 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T14 | 818-827 | Body_part | denotes | cytokines | http://purl.org/sig/ont/fma/fma84050 |
| T15 | 905-919 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T16 | 920-925 | Body_part | denotes | (Ig)E | http://purl.org/sig/ont/fma/fma62875 |
| T17 | 921-923 | Body_part | denotes | Ig | http://purl.org/sig/ont/fma/fma62871 |
| T18 | 967-971 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T19 | 1130-1133 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T20 | 1241-1247 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T21 | 1432-1444 | Body_part | denotes | cell surface | http://purl.org/sig/ont/fma/fma67653 |
| T22 | 1432-1436 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T23 | 1556-1559 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T24 | 2281-2285 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T25 | 2289-2297 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T26 | 2308-2312 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T27 | 2356-2364 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T28 | 2375-2379 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T29 | 2571-2579 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T30 | 2772-2780 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
| T31 | 2865-2870 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T32 | 2880-2904 | Body_part | denotes | antigen‐presenting cells | http://purl.org/sig/ont/fma/fma273565 |
| T33 | 2899-2904 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T34 | 3270-3274 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T35 | 3347-3366 | Body_part | denotes | Natural killer cell | http://purl.org/sig/ont/fma/fma63147 |
| T36 | 3362-3366 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T37 | 3367-3375 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T38 | 3386-3390 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T39 | 3431-3439 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
| T40 | 3450-3454 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T41 | 3738-3762 | Body_part | denotes | antigen‐presenting cells | http://purl.org/sig/ont/fma/fma273565 |
| T42 | 3757-3762 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T43 | 3789-3793 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T44 | 3836-3844 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T45 | 3893-3897 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T46 | 3970-3975 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T47 | 3984-3995 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T48 | 4000-4009 | Body_part | denotes | basophils | http://purl.org/sig/ont/fma/fma62862 |
| T49 | 4026-4029 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T50 | 4178-4186 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T51 | 4332-4336 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T52 | 4598-4602 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T53 | 4647-4655 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T54 | 4675-4679 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T55 | 4724-4728 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T56 | 4806-4811 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T57 | 4838-4847 | Body_part | denotes | cytokines | http://purl.org/sig/ont/fma/fma84050 |
| T58 | 4898-4906 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
| T59 | 4920-4928 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T60 | 4939-4943 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T61 | 4967-4969 | Body_part | denotes | Ag | http://purl.org/sig/ont/fma/fma61898 |
| T62 | 4987-4991 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T63 | 5002-5004 | Body_part | denotes | Ig | http://purl.org/sig/ont/fma/fma62871 |
| T64 | 5006-5020 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T65 | 5213-5221 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
| T66 | 5232-5236 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T67 | 5285-5289 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T68 | 5300-5308 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
| T69 | 5319-5323 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T70 | 5386-5390 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T71 | 5525-5529 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T72 | 5554-5558 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T73 | 5573-5581 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T74 | 5612-5616 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T75 | 5950-5954 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T76 | 6010-6014 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T77 | 6053-6057 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T78 | 6089-6097 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T79 | 6538-6542 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T80 | 6603-6606 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T81 | 6632-6641 | Body_part | denotes | leukocyte | http://purl.org/sig/ont/fma/fma62852 |
| T82 | 6719-6722 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T83 | 6763-6773 | Body_part | denotes | antibody’s | http://purl.org/sig/ont/fma/fma62871 |
| T84 | 6797-6802 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 6797-6802 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T8 | 325-346 | Disease | denotes | inflammatory diseases | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T9 | 831-849 | Disease | denotes | autoimmune disease | http://purl.obolibrary.org/obo/MONDO_0007179 |
| T10 | 883-901 | Disease | denotes | virus in infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T11 | 892-901 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T12 | 929-936 | Disease | denotes | allergy | http://purl.obolibrary.org/obo/MONDO_0005271 |
| T13 | 1811-1817 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T14 | 2138-2141 | Disease | denotes | MOA | http://purl.obolibrary.org/obo/MONDO_0016702 |
| T15 | 2240-2243 | Disease | denotes | MOA | http://purl.obolibrary.org/obo/MONDO_0016702 |
| T16 | 2336-2340 | Disease | denotes | ADCC | http://purl.obolibrary.org/obo/MONDO_0008734 |
| T17 | 2419-2423 | Disease | denotes | ADCP | http://purl.obolibrary.org/obo/MONDO_0022697 |
| T18 | 3070-3073 | Disease | denotes | MOA | http://purl.obolibrary.org/obo/MONDO_0016702 |
| T19 | 4914-4918 | Disease | denotes | ADCC | http://purl.obolibrary.org/obo/MONDO_0008734 |
| T20 | 6285-6293 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31 | 246-247 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T32 | 536-539 | http://purl.obolibrary.org/obo/CLO_0050884 | denotes | ten |
| T33 | 883-888 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T34 | 967-971 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T35 | 972-982 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T36 | 1241-1247 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T37 | 1271-1281 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T38 | 1407-1409 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T39 | 1432-1436 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T40 | 1463-1465 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T41 | 1538-1539 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T42 | 1575-1585 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T43 | 1627-1637 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activating |
| T44 | 1643-1645 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T45 | 1646-1648 | http://purl.obolibrary.org/obo/CLO_0008882 | denotes | Rs |
| T46 | 1788-1790 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T47 | 1888-1898 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activities |
| T48 | 1997-1999 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T49 | 2000-2002 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T50 | 2073-2075 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T51 | 2215-2217 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T52 | 2272-2273 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T53 | 2281-2285 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T54 | 2308-2312 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T55 | 2375-2379 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T56 | 2503-2505 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T57 | 2580-2590 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T58 | 2623-2632 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T59 | 2672-2674 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T60 | 2686-2687 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T61 | 2784-2789 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T62 | 2865-2870 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T63 | 2899-2904 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T64 | 2996-2998 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T65 | 2999-3001 | http://purl.obolibrary.org/obo/CLO_0008882 | denotes | Rs |
| T66 | 3016-3018 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T67 | 3142-3143 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T68 | 3211-3212 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T69 | 3247-3248 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T70 | 3249-3255 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
| T71 | 3270-3274 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T72 | 3318-3320 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T73 | 3344-3345 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T74 | 3347-3366 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | Natural killer cell |
| T75 | 3386-3390 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T76 | 3417-3419 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T77 | 3428-3429 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T78 | 3450-3454 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T79 | 3541-3551 | http://purl.obolibrary.org/obo/CL_0000234 | denotes | phagocytes |
| T80 | 3556-3566 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activating |
| T81 | 3567-3569 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T82 | 3580-3582 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T83 | 3593-3595 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T84 | 3757-3762 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T85 | 3789-3793 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T86 | 3794-3804 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T87 | 3808-3810 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T88 | 3845-3855 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T89 | 3878-3887 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T90 | 3891-3897 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B‐cell |
| T91 | 3929-3939 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activating |
| T92 | 3940-3942 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T93 | 3970-3975 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T94 | 4030-4032 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T95 | 4068-4078 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activating |
| T96 | 4109-4111 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T97 | 4155-4157 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T98 | 4290-4299 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T99 | 4332-4336 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T100 | 4503-4505 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T101 | 4506-4508 | http://purl.obolibrary.org/obo/CLO_0008882 | denotes | Rs |
| T102 | 4514-4515 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T103 | 4550-4552 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T104 | 4562-4568 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
| T105 | 4598-4602 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T106 | 4663-4665 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T107 | 4675-4679 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T108 | 4690-4691 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T109 | 4692-4698 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
| T110 | 4724-4728 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T111 | 4769-4779 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T112 | 4806-4811 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T113 | 4852-4859 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extreme |
| T114 | 4939-4943 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T115 | 4985-4991 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B‐cell |
| T116 | 5051-5053 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T117 | 5120-5122 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T118 | 5201-5211 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | Activation |
| T119 | 5232-5236 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T120 | 5285-5289 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T121 | 5291-5293 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T122 | 5319-5323 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T123 | 5386-5390 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T124 | 5392-5394 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T125 | 5402-5404 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T126 | 5411-5413 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T127 | 5479-5481 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T128 | 5488-5490 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T129 | 5495-5497 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T130 | 5523-5529 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B‐cell |
| T131 | 5554-5558 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T132 | 5559-5569 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T133 | 5612-5616 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T134 | 5617-5627 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T135 | 5642-5652 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activating |
| T136 | 5668-5670 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T137 | 5674-5676 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T138 | 5681-5683 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T139 | 5703-5705 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T140 | 5749-5759 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activating |
| T141 | 5771-5773 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T142 | 5841-5843 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T143 | 5849-5850 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T144 | 5950-5954 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T145 | 5990-5992 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T146 | 6010-6014 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T147 | 6016-6018 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T148 | 6030-6032 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T149 | 6039-6041 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T150 | 6051-6057 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B‐cell |
| T151 | 6098-6108 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T152 | 6116-6117 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T153 | 6119-6129 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | Activating |
| T154 | 6130-6132 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T155 | 6523-6542 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focuses on the cell |
| T156 | 6626-6631 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T157 | 6642-6644 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T158 | 6723-6725 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
| T159 | 6856-6866 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T160 | 6972-6974 | http://purl.obolibrary.org/obo/CLO_0052676 | denotes | Fc |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T9 | 505-510 | Chemical | denotes | sales | http://purl.obolibrary.org/obo/CHEBI_24866 |
| T10 | 540-545 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
| T11 | 958-966 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T12 | 1746-1754 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T13 | 1922-1927 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
| T14 | 2571-2579 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T15 | 2880-2887 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T16 | 2923-2930 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T17 | 2940-2947 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T18 | 3323-3331 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T19 | 3692-3699 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T20 | 3705-3712 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T21 | 3738-3745 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T22 | 3836-3844 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T23 | 3898-3905 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T24 | 4178-4186 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T25 | 4439-4442 | Chemical | denotes | APC | http://purl.obolibrary.org/obo/CHEBI_80551 |
| T26 | 4589-4597 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T27 | 4967-4969 | Chemical | denotes | Ag | http://purl.obolibrary.org/obo/CHEBI_30512|http://purl.obolibrary.org/obo/CHEBI_9141 |
| T29 | 4971-4978 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T30 | 5175-5181 | Chemical | denotes | Action | http://purl.obolibrary.org/obo/CHEBI_5133 |
| T31 | 5414-5416 | Chemical | denotes | RI | http://purl.obolibrary.org/obo/CHEBI_73814|http://purl.obolibrary.org/obo/CHEBI_8753 |
| T33 | 5491-5493 | Chemical | denotes | RI | http://purl.obolibrary.org/obo/CHEBI_73814|http://purl.obolibrary.org/obo/CHEBI_8753 |
| T35 | 5677-5679 | Chemical | denotes | RI | http://purl.obolibrary.org/obo/CHEBI_73814|http://purl.obolibrary.org/obo/CHEBI_8753 |
| T37 | 5684-5686 | Chemical | denotes | RI | http://purl.obolibrary.org/obo/CHEBI_73814|http://purl.obolibrary.org/obo/CHEBI_8753 |
| T39 | 6042-6044 | Chemical | denotes | RI | http://purl.obolibrary.org/obo/CHEBI_73814|http://purl.obolibrary.org/obo/CHEBI_8753 |
| T41 | 6089-6097 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T42 | 6549-6557 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T43 | 6886-6895 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
LitCovid-sample-MedDRA
| Id | Subject | Object | Predicate | Lexical cue | meddra_id |
|---|---|---|---|---|---|
| T5 | 905-919 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | immunoglobulin | http://purl.bioontology.org/ontology/MEDDRA/10021496 |
| T6 | 921-923 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | Ig | http://purl.bioontology.org/ontology/MEDDRA/10021496 |
| T7 | 2799-2822 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | neutralizing antibodies | http://purl.bioontology.org/ontology/MEDDRA/10058063 |
| T8 | 5002-5004 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | Ig | http://purl.bioontology.org/ontology/MEDDRA/10021496 |
| T9 | 5006-5020 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | immunoglobulin | http://purl.bioontology.org/ontology/MEDDRA/10021496 |
LitCovid-sample-PD-IDO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T13 | 265-273 | http://purl.obolibrary.org/obo/OGMS_0000031 | denotes | diseases |
| T14 | 338-346 | http://purl.obolibrary.org/obo/OGMS_0000031 | denotes | diseases |
| T15 | 842-849 | http://purl.obolibrary.org/obo/OGMS_0000031 | denotes | disease |
| T16 | 883-888 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T17 | 892-901 | http://purl.obolibrary.org/obo/IDO_0000586 | denotes | infection |
| T18 | 967-971 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T19 | 1432-1436 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T20 | 1693-1702 | http://purl.obolibrary.org/obo/IDO_0000528 | denotes | pathogens |
| T21 | 1825-1829 | http://purl.obolibrary.org/obo/IDO_0000531 | denotes | host |
| T22 | 2078-2086 | http://purl.obolibrary.org/obo/BFO_0000034 | denotes | function |
| T23 | 2281-2285 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T24 | 2308-2312 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T25 | 2375-2379 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T26 | 2784-2789 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T27 | 2865-2870 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
| T28 | 2899-2904 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
| T29 | 3270-3274 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T30 | 3332-3341 | http://purl.obolibrary.org/obo/BFO_0000034 | denotes | functions |
| T31 | 3362-3366 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T32 | 3386-3390 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T33 | 3450-3454 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T34 | 3757-3762 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
| T35 | 3789-3793 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T36 | 3893-3897 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T37 | 3970-3975 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
| T38 | 4332-4336 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T39 | 4456-4472 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T40 | 4598-4602 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T41 | 4675-4679 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T42 | 4724-4728 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T43 | 4806-4811 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
| T44 | 4939-4943 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T45 | 4987-4991 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T46 | 5232-5236 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T47 | 5285-5289 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T48 | 5319-5323 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T49 | 5386-5390 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T50 | 5525-5529 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T51 | 5554-5558 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T52 | 5612-5616 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T53 | 5950-5954 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T54 | 6010-6014 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T55 | 6053-6057 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T56 | 6538-6542 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T57 | 6558-6567 | http://purl.obolibrary.org/obo/BFO_0000034 | denotes | functions |
| T58 | 6632-6641 | http://purl.obolibrary.org/obo/CL_0000738 | denotes | leukocyte |
| T59 | 6886-6895 | http://purl.obolibrary.org/obo/IDO_0000559 | denotes | antiviral |
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T3 | 2571-2579 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T4 | 3836-3844 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T5 | 4178-4186 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
| T6 | 6089-6097 | Chemical | denotes | tyrosine | http://purl.obolibrary.org/obo/CHEBI_18186 |
LitCovid-sample-Pubtator
| Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
|---|---|---|---|---|---|
| 100 | 4439-4442 | Disease | denotes | APC | MESH:D011125 |
| 101 | 4953-4965 | Disease | denotes | cytotoxicity | MESH:D064420 |
| 119 | 5291-5299 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 120 | 5392-5400 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 121 | 5402-5409 | Gene | denotes | FcγRIIa | Gene:2212 |
| 122 | 5411-5416 | Gene | denotes | FcγRI | Gene:2214 |
| 123 | 5488-5493 | Gene | denotes | FcγRI | Gene:2214 |
| 124 | 5495-5503 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 125 | 5634-5637 | Gene | denotes | BCR | Gene:613 |
| 126 | 5703-5710 | Gene | denotes | FcγRIIb | Gene:2213 |
| 127 | 5771-5778 | Gene | denotes | FcγRIIb | Gene:2213 |
| 128 | 6016-6023 | Gene | denotes | FcγRIIb | Gene:2213 |
| 129 | 6030-6037 | Gene | denotes | FcγRIIa | Gene:2212 |
| 131 | 5990-5994 | Gene | denotes | FcγR | Gene:2213 |
| 132 | 5668-5672 | Gene | denotes | FcγR | Gene:2213 |
| 134 | 5479-5486 | Gene | denotes | FcγRIIa | Gene:2212 |
| 135 | 5246-5258 | Disease | denotes | cytotoxicity | MESH:D064420 |
| 141 | 6089-6097 | Chemical | denotes | tyrosine | MESH:D014443 |
| 145 | 6285-6293 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 150 | 6843-6847 | Gene | denotes | FcRn | Gene:2217 |
| 151 | 6972-6988 | Gene | denotes | Fc receptor‐like | Gene:84824 |
| 152 | 6642-6646 | Gene | denotes | FcγR | Gene:2213 |
| 153 | 6626-6631 | Species | denotes | human | Tax:9606 |
| 235 | 6285-6293 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 257 | 6285-6293 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 35 | 325-346 | Disease | denotes | inflammatory diseases | MESH:D007249 |
| 36 | 359-366 | Disease | denotes | cancers | MESH:D009369 |
| 37 | 397-409 | Disease | denotes | malignancies | MESH:D009369 |
| 42 | 1463-1467 | Gene | denotes | FcγR | Gene:2213 |
| 43 | 831-849 | Disease | denotes | autoimmune disease | MESH:D001327 |
| 44 | 892-901 | Disease | denotes | infection | MESH:D007239 |
| 45 | 929-936 | Disease | denotes | allergy | MESH:D004342 |
| 48 | 2000-2004 | Gene | denotes | FcγR | Gene:2213 |
| 49 | 1788-1792 | Gene | denotes | FcγR | Gene:2213 |
| 58 | 2503-2510 | Gene | denotes | FcγRIIb | Gene:2213 |
| 59 | 3016-3023 | Gene | denotes | FcγRIIb | Gene:2213 |
| 60 | 2672-2676 | Gene | denotes | FcγR | Gene:2213 |
| 61 | 2215-2219 | Gene | denotes | FcγR | Gene:2213 |
| 62 | 2073-2077 | Gene | denotes | FcγR | Gene:2213 |
| 63 | 3050-3062 | Species | denotes | participants | Tax:9606 |
| 64 | 2571-2579 | Chemical | denotes | tyrosine | MESH:D014443 |
| 65 | 2322-2334 | Disease | denotes | cytotoxicity | MESH:D064420 |
| 84 | 3417-3425 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 85 | 3580-3588 | Gene | denotes | FcγRIIIa | Gene:2214 |
| 86 | 3808-3815 | Gene | denotes | FcγRIIb | Gene:2213 |
| 861 | 6285-6293 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 87 | 4109-4116 | Gene | denotes | FcγRIIb | Gene:2213 |
| 88 | 4550-4557 | Gene | denotes | FcγRIIb | Gene:2213 |
| 89 | 3940-3944 | Gene | denotes | FcγR | Gene:2213 |
| 90 | 3567-3571 | Gene | denotes | FcγR | Gene:2213 |
| 91 | 3318-3322 | Gene | denotes | FcγR | Gene:2213 |
| 92 | 4663-4667 | Gene | denotes | FcγR | Gene:2213 |
| 93 | 4155-4162 | Gene | denotes | FcγRIIb | Gene:2213 |
| 94 | 4980-4983 | Gene | denotes | BCR | Gene:613 |
| 95 | 3593-3600 | Gene | denotes | FcγRIIa | Gene:2212 |
| 96 | 3836-3844 | Chemical | denotes | tyrosine | MESH:D014443 |
| 97 | 4178-4186 | Chemical | denotes | tyrosine | MESH:D014443 |
| 98 | 4278-4282 | Chemical | denotes | ITAM | |
| 99 | 3400-3412 | Disease | denotes | cytotoxicity | MESH:D064420 |
LitCovid-sample-PD-NCBITaxon
| Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
|---|---|---|---|---|---|
| T4 | 6285-6293 | Species | denotes | COVID-19 | NCBItxid:2697049 |
| T5 | 6626-6631 | Species | denotes | human | NCBItxid:9606 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17 | 0-12 | Sentence | denotes | Introduction |
| T18 | 13-148 | Sentence | denotes | The regulatory approval of the first therapeutic monoclonal antibodies (mAbs) in the 1980s ushered in the modern era of immune therapy. |
| T19 | 149-274 | Sentence | denotes | Since then, mAbs have become one of the most clinically successful therapeutic modalities across a diverse array of diseases. |
| T20 | 275-728 | Sentence | denotes | They have revolutionized the treatment of chronic inflammatory diseases and of some cancers including otherwise incurable malignancies.1 They are commercially important and in 2017, five mAbs collectively grossed $45.6 billion in sales, placing them in the top ten drugs globally.2 MAb development is expanding rapidly with over 100 mAbs approved for clinical use or in late‐stage clinical trials and over 600 in various stages of clinical development.1 |
| T21 | 729-1103 | Sentence | denotes | The therapeutic actions of mAbs can take many forms—neutralization of the target such as cytokines in autoimmune disease, clearance of the target such as virus in infection or immunoglobulin (Ig)E in allergy, induction of innate effector cell activation that leads to target destruction by direct killing or the induction of apoptosis and the induction of adaptive immunity. |
| T22 | 1104-1496 | Sentence | denotes | Most therapeutic mAbs are IgG in origin and the heavy‐chain subclass determines many of their biological properties including their long plasma half‐life3; complement activation, which is important in the action of some cytotoxic mAbs4, 5, 6 and importantly engagement by their fragment crystallizable (Fc) region with specific cell surface receptors, called FcγR, the subject of this review. |
| T23 | 1497-1830 | Sentence | denotes | In normal homeostatic immunity, there is a balance between IgG immune complex activation of proinflammatory responses through the activating‐type FcγRs—which leads to the destruction of opsonized pathogens—and of the modulation of these destructive effector responses by the inhibitory‐type FcγR, thereby avoiding injury to the host. |
| T24 | 1831-2019 | Sentence | denotes | Thus, therapeutic mAbs powerfully exploit these opposing activities, making them versatile drugs whose therapeutic potency can be improved by specific engineering of Fc–FcγR interactions.7 |
| T25 | 2020-2183 | Sentence | denotes | Many therapeutic mAbs depend, to varying degrees, on FcγR function (Figure 1, Table 1) for their mechanism of action (MOA) and/or their pharmacokinetic properties. |
| T26 | 2184-2436 | Sentence | denotes | For some mAbs interaction with FcγR is central to their MOA, such as the destruction of a target cell by antibody‐dependent cell‐mediated cytotoxicity (ADCC; Figure 1a) or antibody‐dependent cell‐mediated phagocytosis (phagocytosis or ADCP; Figure 1b). |
| T27 | 2437-2655 | Sentence | denotes | This also includes mAbs that may harness the inhibitory action of FcγRIIb to modulate the proinflammatory responses of immunoreceptor tyrosine activation motif (ITAM)‐dependent receptor signaling complexes (Figure 1c). |
| T28 | 2656-2982 | Sentence | denotes | For other mAbs, FcγR may play a secondary role, such as the removal or “sweeping” of all immune complexes formed by cytokine or virus‐specific neutralizing antibodies or of opsonized fragments of lysed target cells which in antigen‐presenting cells may also feed the antigen into the antigen‐presentation pathways (Figure 1d). |
| T29 | 2983-3275 | Sentence | denotes | In addition, FcγRs, particularly FcγRIIb (Figure 1e), are also key participants in the MOA of immune‐stimulating agonistic mAbs or apoptotic mAbs by acting as a scaffold for the additional cross‐linking of mAbs already bound to a cellular target, thereby inducing a signal in the target cell. |
| T30 | 3276-3601 | Sentence | denotes | Figure 1 Graphical representation of the FcγR effector functions. (a) Natural killer cell antibody‐dependent cell‐mediated cytotoxicity via FcγRIIIa. (b) Antibody‐dependent cell‐mediated phagocytosis, and/or trogocytosis of large immune complexes, by professional phagocytes via activating FcγR such as FcγRIIIa and FcγRIIa. |
| T31 | 3602-3816 | Sentence | denotes | Biological sequelae include the destruction of the ingested complexes which may also feed antigen into antigen‐presentation pathways of antigen‐presenting cells (APCs). (c) Inhibition of cell activation by FcγRIIb. |
| T32 | 3817-4117 | Sentence | denotes | The immunoreceptor tyrosine activation motif (ITAM)‐mediated signaling of B‐cell antigen receptors (left) or of activating FcγR (right) on innate immune cells such as macrophages and basophils is inhibited by IgG Fc‐mediated co‐cross‐linking of these activating receptors with the inhibitory FcγRIIb. |
| T33 | 4118-4529 | Sentence | denotes | This leads to phosphorylation of the FcγRIIb immunoreceptor tyrosine‐based inhibitory motif (ITIM) and consequently recruits the phosphatases that modulate the ITAM‐driven signaling responses leading to diminished cell responses. (d) Sweeping or internalization of small immune complexes leading to their removal and, in APC, to enhanced immune responses. (e) Scaffolding in which the FcγRs play a passive role. |
| T34 | 4530-4848 | Sentence | denotes | Typically involving FcγRIIb, no signal is generated in the effector cell but “super‐cross‐linking” of the opsonizing antibody by the FcγR on one cell generates a signal in the conjugated target cell, for example, induction of apoptosis or activation in agonistic expansion of cells and/or their secretion of cytokines. |
| T35 | 4849-4913 | Sentence | denotes | In extreme cases, this leads to life‐threatening cytokine storm. |
| T36 | 4914-5041 | Sentence | denotes | ADCC, antibody‐dependent cell‐mediated cytotoxicity; Ag, antigen; BCR, B‐cell receptor; Ig, immunoglobulin; NK, natural killer. |
| T37 | 5042-5119 | Sentence | denotes | Table 1 FcγR responses relevant to therapeutic monoclonal antibodies (mAbs). |
| T38 | 5120-5200 | Sentence | denotes | FcγR‐mediated mechanism of action Effector responses Action Dominant receptor |
| T39 | 5201-5299 | Sentence | denotes | Activation Antibody‐dependent cell‐mediated cytotoxicity Direct killing of target cell FcγRIIIa |
| T40 | 5300-5416 | Sentence | denotes | Antibody‐dependent cell‐mediated phagocytosis, trogocytosis Direct killing of target cell FcγRIIIa, FcγRIIa, FcγRI |
| T41 | 5417-5503 | Sentence | denotes | Antigen presentation Vaccine‐like immunity post‐mAb therapy FcγRIIa, FcγRI, FcγRIIIa |
| T42 | 5504-5688 | Sentence | denotes | Inhibition Reduce B‐cell proliferation or innate cell activation by antibody complexes Inhibition of ITAM cell activation (i.e. BCR) or activating‐type FcR (i.e. FcγR, FcεRI, FcαRI). |
| T43 | 5689-5769 | Sentence | denotes | Note that the FcγRIIb must be co‐cross‐linked with the ITAM activating receptor. |
| T44 | 5771-5778 | Sentence | denotes | FcγRIIb |
| T45 | 5779-5850 | Sentence | denotes | Sweeping Internalization Removal of small immune complexes FcγRIIb a |
| T46 | 5851-6045 | Sentence | denotes | Scaffolding Target agonism or apoptosis Passive “super‐cross‐linking” of mAb on opsonized target cell, for example, CD40, CD28, CD20, by FcγR on an adjacent cell FcγRIIb; also FcγRIIa, FcγRI? |
| T47 | 6046-6115 | Sentence | denotes | BCR, B‐cell receptor; ITAM, immunoreceptor tyrosine activation motif. |
| T48 | 6116-6179 | Sentence | denotes | a Activating FcγR can also contribute to removal of complexes. |
| T49 | 6180-6327 | Sentence | denotes | John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response. |
| T50 | 6328-6510 | Sentence | denotes | It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency. |
| T51 | 6511-6998 | Sentence | denotes | This review focuses on the cell‐based effector functions that arise from the interaction of IgG with the classical human leukocyte FcγR.7 Although beyond the scope of this review, it should be noted that the IgG‐Fc portion dictates other aspects of an antibody’s biology, including its serum half‐life mediated by the neonatal FcR (FcRn), 3 the activation of complement C1,8 antiviral protection via the intracellular receptor TRIM219 and interactions with the Fc receptor‐like family.10 |
LitCovid-sample-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 6797-6802 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-sample-UniProt
| Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
|---|---|---|---|---|---|
| T1 | 4439-4442 | Protein | denotes | APC | https://www.uniprot.org/uniprot/P0C1F2|https://www.uniprot.org/uniprot/P01532 |
| T3 | 5969-5973 | Protein | denotes | CD40 | https://www.uniprot.org/uniprot/Q9BYU0|https://www.uniprot.org/uniprot/Q99NE3|https://www.uniprot.org/uniprot/Q99NE2|https://www.uniprot.org/uniprot/Q99NE1|https://www.uniprot.org/uniprot/Q99NE0|https://www.uniprot.org/uniprot/Q8SQ34|https://www.uniprot.org/uniprot/Q8K2X6|https://www.uniprot.org/uniprot/Q86YK5|https://www.uniprot.org/uniprot/Q7YRL5|https://www.uniprot.org/uniprot/Q7M4Q8|https://www.uniprot.org/uniprot/Q5U007|https://www.uniprot.org/uniprot/Q5JY15|https://www.uniprot.org/uniprot/Q542B1|https://www.uniprot.org/uniprot/Q53GN5|https://www.uniprot.org/uniprot/Q3ZTK5|https://www.uniprot.org/uniprot/Q3UBH3|https://www.uniprot.org/uniprot/Q3U7C9|https://www.uniprot.org/uniprot/Q3U799|https://www.uniprot.org/uniprot/Q3TSL2|https://www.uniprot.org/uniprot/Q3TS33|https://www.uniprot.org/uniprot/Q3LRP1|https://www.uniprot.org/uniprot/Q28203|https://www.uniprot.org/uniprot/P27512|https://www.uniprot.org/uniprot/P25942|https://www.uniprot.org/uniprot/E1P5S9|https://www.uniprot.org/uniprot/A7YWS9 |
| T29 | 5975-5979 | Protein | denotes | CD28 | https://www.uniprot.org/uniprot/Q9BYV0|https://www.uniprot.org/uniprot/Q8WXJ2|https://www.uniprot.org/uniprot/Q8NI56|https://www.uniprot.org/uniprot/Q8NI55|https://www.uniprot.org/uniprot/Q8NI54|https://www.uniprot.org/uniprot/Q70WG0|https://www.uniprot.org/uniprot/Q6GSH7|https://www.uniprot.org/uniprot/Q52M23|https://www.uniprot.org/uniprot/Q28071|https://www.uniprot.org/uniprot/Q13964|https://www.uniprot.org/uniprot/P42069|https://www.uniprot.org/uniprot/P31042|https://www.uniprot.org/uniprot/P31041|https://www.uniprot.org/uniprot/P10747|https://www.uniprot.org/uniprot/O02757|https://www.uniprot.org/uniprot/A8KAC1 |
| T45 | 5981-5985 | Protein | denotes | CD20 | https://www.uniprot.org/uniprot/Q3C2E2|https://www.uniprot.org/uniprot/Q13963|https://www.uniprot.org/uniprot/P19437|https://www.uniprot.org/uniprot/P08984|https://www.uniprot.org/uniprot/B4DT24|https://www.uniprot.org/uniprot/A6NMS4|https://www.uniprot.org/uniprot/P11836 |
| T52 | 6843-6847 | Protein | denotes | FcRn | https://www.uniprot.org/uniprot/Q9R2A5|https://www.uniprot.org/uniprot/Q9QUR0|https://www.uniprot.org/uniprot/Q9NZ19|https://www.uniprot.org/uniprot/Q9HBV7|https://www.uniprot.org/uniprot/Q8SPV9|https://www.uniprot.org/uniprot/Q61559|https://www.uniprot.org/uniprot/Q5HYM5|https://www.uniprot.org/uniprot/Q2KN22|https://www.uniprot.org/uniprot/P55899|https://www.uniprot.org/uniprot/P13599 |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T14 | 818-827 | Body_part | denotes | cytokines | http://purl.org/sig/ont/fma/fma84050 |
| T15 | 905-919 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T16 | 920-925 | Body_part | denotes | (Ig)E | http://purl.org/sig/ont/fma/fma62875 |
| T17 | 921-923 | Body_part | denotes | Ig | http://purl.org/sig/ont/fma/fma62871 |
| T18 | 967-971 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T19 | 1130-1133 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T20 | 1241-1247 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T21 | 1432-1444 | Body_part | denotes | cell surface | http://purl.org/sig/ont/fma/fma67653 |
| T22 | 1432-1436 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T23 | 1556-1559 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T24 | 2281-2285 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T25 | 2289-2297 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T26 | 2308-2312 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T27 | 2356-2364 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T28 | 2375-2379 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T29 | 2571-2579 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T30 | 2772-2780 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
| T31 | 2865-2870 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T32 | 2880-2904 | Body_part | denotes | antigen‐presenting cells | http://purl.org/sig/ont/fma/fma273565 |
| T33 | 2899-2904 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T34 | 3270-3274 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T35 | 3347-3366 | Body_part | denotes | Natural killer cell | http://purl.org/sig/ont/fma/fma63147 |
| T36 | 3362-3366 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T37 | 3367-3375 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T38 | 3386-3390 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T39 | 3431-3439 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
| T40 | 3450-3454 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T41 | 3738-3762 | Body_part | denotes | antigen‐presenting cells | http://purl.org/sig/ont/fma/fma273565 |
| T42 | 3757-3762 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T43 | 3789-3793 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T44 | 3836-3844 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T45 | 3893-3897 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T46 | 3970-3975 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T47 | 3984-3995 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T48 | 4000-4009 | Body_part | denotes | basophils | http://purl.org/sig/ont/fma/fma62862 |
| T49 | 4026-4029 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T50 | 4178-4186 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T51 | 4332-4336 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T52 | 4598-4602 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T53 | 4647-4655 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T54 | 4675-4679 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T55 | 4724-4728 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T56 | 4806-4811 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T57 | 4838-4847 | Body_part | denotes | cytokines | http://purl.org/sig/ont/fma/fma84050 |
| T58 | 4898-4906 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
| T59 | 4920-4928 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T60 | 4939-4943 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T61 | 4987-4991 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T62 | 5002-5004 | Body_part | denotes | Ig | http://purl.org/sig/ont/fma/fma62871 |
| T63 | 5006-5020 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T64 | 5213-5221 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
| T65 | 5232-5236 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T66 | 5285-5289 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T67 | 5300-5308 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
| T68 | 5319-5323 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T69 | 5386-5390 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T70 | 5525-5529 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T71 | 5554-5558 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T72 | 5573-5581 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T73 | 5612-5616 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T74 | 5950-5954 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T75 | 6010-6014 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T76 | 6053-6057 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T77 | 6089-6097 | Body_part | denotes | tyrosine | http://purl.org/sig/ont/fma/fma82768 |
| T78 | 6538-6542 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T79 | 6603-6606 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T80 | 6632-6641 | Body_part | denotes | leukocyte | http://purl.org/sig/ont/fma/fma62852 |
| T81 | 6719-6722 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T82 | 6763-6773 | Body_part | denotes | antibody’s | http://purl.org/sig/ont/fma/fma62871 |
| T83 | 6797-6802 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
LitCovid-sample-PD-GO-BP-0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 967-982 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T4 | 1041-1063 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | induction of apoptosis |
| T5 | 1054-1063 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T6 | 1260-1281 | http://purl.obolibrary.org/obo/GO_0006956 | denotes | complement activation |
| T7 | 2336-2340 | http://purl.obolibrary.org/obo/GO_0001788 | denotes | ADCC |
| T8 | 2389-2401 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T9 | 2403-2415 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T10 | 2623-2632 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T11 | 2940-2960 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | antigen‐presentation |
| T12 | 3464-3476 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T13 | 3705-3725 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | antigen‐presentation |
| T14 | 3775-3804 | http://purl.obolibrary.org/obo/GO_0050866 | denotes | Inhibition of cell activation |
| T15 | 3789-3804 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T16 | 3878-3887 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T17 | 3956-3969 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune |
| T18 | 4132-4147 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T19 | 4247-4259 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatases |
| T20 | 4290-4299 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T21 | 4456-4472 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T22 | 4743-4765 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | induction of apoptosis |
| T23 | 4756-4765 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T24 | 4825-4834 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
| T25 | 4914-4918 | http://purl.obolibrary.org/obo/GO_0001788 | denotes | ADCC |
| T26 | 5333-5345 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T27 | 5417-5437 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | Antigen presentation |
| T28 | 5523-5543 | http://purl.obolibrary.org/obo/GO_0042100 | denotes | B‐cell proliferation |
| T29 | 5525-5543 | http://purl.obolibrary.org/obo/GO_0008283 | denotes | cell proliferation |
| T30 | 5554-5569 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T31 | 5612-5627 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T32 | 5882-5891 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | apoptosis |
| T33 | 5882-5891 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
LitCovid-sample-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T6 | 325-346 | Disease | denotes | inflammatory diseases | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T7 | 831-849 | Disease | denotes | autoimmune disease | http://purl.obolibrary.org/obo/MONDO_0007179 |
| T8 | 883-901 | Disease | denotes | virus in infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T9 | 929-936 | Disease | denotes | allergy | http://purl.obolibrary.org/obo/MONDO_0005271 |
| T10 | 1811-1817 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T11 | 6285-6293 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sample-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T2 | 831-849 | Phenotype | denotes | autoimmune disease | http://purl.obolibrary.org/obo/HP_0002960 |
| T3 | 929-936 | Phenotype | denotes | allergy | http://purl.obolibrary.org/obo/HP_0012393 |
| T4 | 4898-4912 | Phenotype | denotes | cytokine storm | http://purl.obolibrary.org/obo/HP_0033041 |
LitCovid-sample-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 967-982 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T4 | 1041-1063 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | induction of apoptosis |
| T5 | 1054-1063 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T6 | 1260-1281 | http://purl.obolibrary.org/obo/GO_0006956 | denotes | complement activation |
| T7 | 2336-2340 | http://purl.obolibrary.org/obo/GO_0001788 | denotes | ADCC |
| T8 | 2389-2401 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T9 | 2403-2415 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T10 | 2623-2632 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T11 | 2940-2960 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | antigen‐presentation |
| T12 | 3464-3476 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T13 | 3705-3725 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | antigen‐presentation |
| T14 | 3775-3804 | http://purl.obolibrary.org/obo/GO_0050866 | denotes | Inhibition of cell activation |
| T15 | 3789-3804 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T16 | 3878-3887 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T17 | 3956-3969 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune |
| T18 | 4132-4147 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T19 | 4247-4259 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatases |
| T20 | 4290-4299 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T21 | 4456-4472 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T22 | 4743-4765 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | induction of apoptosis |
| T23 | 4756-4765 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T24 | 4825-4834 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
| T25 | 4914-4918 | http://purl.obolibrary.org/obo/GO_0001788 | denotes | ADCC |
| T26 | 5333-5345 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T27 | 5417-5437 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | Antigen presentation |
| T28 | 5523-5543 | http://purl.obolibrary.org/obo/GO_0042100 | denotes | B‐cell proliferation |
| T29 | 5525-5543 | http://purl.obolibrary.org/obo/GO_0008283 | denotes | cell proliferation |
| T30 | 5554-5569 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T31 | 5612-5627 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T32 | 5882-5891 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T33 | 5882-5891 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | apoptosis |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 967-982 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T4 | 1041-1063 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | induction of apoptosis |
| T5 | 1054-1063 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T6 | 1260-1281 | http://purl.obolibrary.org/obo/GO_0006956 | denotes | complement activation |
| T7 | 2336-2340 | http://purl.obolibrary.org/obo/GO_0001788 | denotes | ADCC |
| T8 | 2389-2401 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T9 | 2403-2415 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T10 | 2623-2632 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T11 | 2940-2960 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | antigen‐presentation |
| T12 | 3464-3476 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T13 | 3705-3725 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | antigen‐presentation |
| T14 | 3775-3804 | http://purl.obolibrary.org/obo/GO_0050866 | denotes | Inhibition of cell activation |
| T15 | 3789-3804 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T16 | 3878-3887 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T17 | 3956-3969 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune |
| T18 | 4132-4147 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T19 | 4247-4259 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatases |
| T20 | 4290-4299 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T21 | 4456-4472 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T22 | 4743-4765 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | induction of apoptosis |
| T23 | 4756-4765 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T24 | 4825-4834 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
| T25 | 4914-4918 | http://purl.obolibrary.org/obo/GO_0001788 | denotes | ADCC |
| T26 | 5333-5345 | http://purl.obolibrary.org/obo/GO_0006909 | denotes | phagocytosis |
| T27 | 5417-5437 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | Antigen presentation |
| T28 | 5523-5543 | http://purl.obolibrary.org/obo/GO_0042100 | denotes | B‐cell proliferation |
| T29 | 5525-5543 | http://purl.obolibrary.org/obo/GO_0008283 | denotes | cell proliferation |
| T30 | 5554-5569 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T31 | 5612-5627 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T32 | 5882-5891 | http://purl.obolibrary.org/obo/GO_0097194 | denotes | apoptosis |
| T33 | 5882-5891 | http://purl.obolibrary.org/obo/GO_0006915 | denotes | apoptosis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17 | 0-12 | Sentence | denotes | Introduction |
| T18 | 13-148 | Sentence | denotes | The regulatory approval of the first therapeutic monoclonal antibodies (mAbs) in the 1980s ushered in the modern era of immune therapy. |
| T19 | 149-274 | Sentence | denotes | Since then, mAbs have become one of the most clinically successful therapeutic modalities across a diverse array of diseases. |
| T20 | 275-728 | Sentence | denotes | They have revolutionized the treatment of chronic inflammatory diseases and of some cancers including otherwise incurable malignancies.1 They are commercially important and in 2017, five mAbs collectively grossed $45.6 billion in sales, placing them in the top ten drugs globally.2 MAb development is expanding rapidly with over 100 mAbs approved for clinical use or in late‐stage clinical trials and over 600 in various stages of clinical development.1 |
| T21 | 729-1103 | Sentence | denotes | The therapeutic actions of mAbs can take many forms—neutralization of the target such as cytokines in autoimmune disease, clearance of the target such as virus in infection or immunoglobulin (Ig)E in allergy, induction of innate effector cell activation that leads to target destruction by direct killing or the induction of apoptosis and the induction of adaptive immunity. |
| T22 | 1104-1496 | Sentence | denotes | Most therapeutic mAbs are IgG in origin and the heavy‐chain subclass determines many of their biological properties including their long plasma half‐life3; complement activation, which is important in the action of some cytotoxic mAbs4, 5, 6 and importantly engagement by their fragment crystallizable (Fc) region with specific cell surface receptors, called FcγR, the subject of this review. |
| T23 | 1497-1830 | Sentence | denotes | In normal homeostatic immunity, there is a balance between IgG immune complex activation of proinflammatory responses through the activating‐type FcγRs—which leads to the destruction of opsonized pathogens—and of the modulation of these destructive effector responses by the inhibitory‐type FcγR, thereby avoiding injury to the host. |
| T24 | 1831-2019 | Sentence | denotes | Thus, therapeutic mAbs powerfully exploit these opposing activities, making them versatile drugs whose therapeutic potency can be improved by specific engineering of Fc–FcγR interactions.7 |
| T25 | 2020-2183 | Sentence | denotes | Many therapeutic mAbs depend, to varying degrees, on FcγR function (Figure 1, Table 1) for their mechanism of action (MOA) and/or their pharmacokinetic properties. |
| T26 | 2184-2436 | Sentence | denotes | For some mAbs interaction with FcγR is central to their MOA, such as the destruction of a target cell by antibody‐dependent cell‐mediated cytotoxicity (ADCC; Figure 1a) or antibody‐dependent cell‐mediated phagocytosis (phagocytosis or ADCP; Figure 1b). |
| T27 | 2437-2655 | Sentence | denotes | This also includes mAbs that may harness the inhibitory action of FcγRIIb to modulate the proinflammatory responses of immunoreceptor tyrosine activation motif (ITAM)‐dependent receptor signaling complexes (Figure 1c). |
| T28 | 2656-2982 | Sentence | denotes | For other mAbs, FcγR may play a secondary role, such as the removal or “sweeping” of all immune complexes formed by cytokine or virus‐specific neutralizing antibodies or of opsonized fragments of lysed target cells which in antigen‐presenting cells may also feed the antigen into the antigen‐presentation pathways (Figure 1d). |
| T29 | 2983-3275 | Sentence | denotes | In addition, FcγRs, particularly FcγRIIb (Figure 1e), are also key participants in the MOA of immune‐stimulating agonistic mAbs or apoptotic mAbs by acting as a scaffold for the additional cross‐linking of mAbs already bound to a cellular target, thereby inducing a signal in the target cell. |
| T30 | 3276-3601 | Sentence | denotes | Figure 1 Graphical representation of the FcγR effector functions. (a) Natural killer cell antibody‐dependent cell‐mediated cytotoxicity via FcγRIIIa. (b) Antibody‐dependent cell‐mediated phagocytosis, and/or trogocytosis of large immune complexes, by professional phagocytes via activating FcγR such as FcγRIIIa and FcγRIIa. |
| T31 | 3602-3816 | Sentence | denotes | Biological sequelae include the destruction of the ingested complexes which may also feed antigen into antigen‐presentation pathways of antigen‐presenting cells (APCs). (c) Inhibition of cell activation by FcγRIIb. |
| T32 | 3817-4117 | Sentence | denotes | The immunoreceptor tyrosine activation motif (ITAM)‐mediated signaling of B‐cell antigen receptors (left) or of activating FcγR (right) on innate immune cells such as macrophages and basophils is inhibited by IgG Fc‐mediated co‐cross‐linking of these activating receptors with the inhibitory FcγRIIb. |
| T33 | 4118-4529 | Sentence | denotes | This leads to phosphorylation of the FcγRIIb immunoreceptor tyrosine‐based inhibitory motif (ITIM) and consequently recruits the phosphatases that modulate the ITAM‐driven signaling responses leading to diminished cell responses. (d) Sweeping or internalization of small immune complexes leading to their removal and, in APC, to enhanced immune responses. (e) Scaffolding in which the FcγRs play a passive role. |
| T34 | 4530-4848 | Sentence | denotes | Typically involving FcγRIIb, no signal is generated in the effector cell but “super‐cross‐linking” of the opsonizing antibody by the FcγR on one cell generates a signal in the conjugated target cell, for example, induction of apoptosis or activation in agonistic expansion of cells and/or their secretion of cytokines. |
| T35 | 4849-4913 | Sentence | denotes | In extreme cases, this leads to life‐threatening cytokine storm. |
| T36 | 4914-5041 | Sentence | denotes | ADCC, antibody‐dependent cell‐mediated cytotoxicity; Ag, antigen; BCR, B‐cell receptor; Ig, immunoglobulin; NK, natural killer. |
| T37 | 5042-5119 | Sentence | denotes | Table 1 FcγR responses relevant to therapeutic monoclonal antibodies (mAbs). |
| T38 | 5120-5200 | Sentence | denotes | FcγR‐mediated mechanism of action Effector responses Action Dominant receptor |
| T39 | 5201-5299 | Sentence | denotes | Activation Antibody‐dependent cell‐mediated cytotoxicity Direct killing of target cell FcγRIIIa |
| T40 | 5300-5416 | Sentence | denotes | Antibody‐dependent cell‐mediated phagocytosis, trogocytosis Direct killing of target cell FcγRIIIa, FcγRIIa, FcγRI |
| T41 | 5417-5503 | Sentence | denotes | Antigen presentation Vaccine‐like immunity post‐mAb therapy FcγRIIa, FcγRI, FcγRIIIa |
| T42 | 5504-5688 | Sentence | denotes | Inhibition Reduce B‐cell proliferation or innate cell activation by antibody complexes Inhibition of ITAM cell activation (i.e. BCR) or activating‐type FcR (i.e. FcγR, FcεRI, FcαRI). |
| T43 | 5689-5769 | Sentence | denotes | Note that the FcγRIIb must be co‐cross‐linked with the ITAM activating receptor. |
| T44 | 5771-5778 | Sentence | denotes | FcγRIIb |
| T45 | 5779-5850 | Sentence | denotes | Sweeping Internalization Removal of small immune complexes FcγRIIb a |
| T46 | 5851-6045 | Sentence | denotes | Scaffolding Target agonism or apoptosis Passive “super‐cross‐linking” of mAb on opsonized target cell, for example, CD40, CD28, CD20, by FcγR on an adjacent cell FcγRIIb; also FcγRIIa, FcγRI? |
| T47 | 6046-6115 | Sentence | denotes | BCR, B‐cell receptor; ITAM, immunoreceptor tyrosine activation motif. |
| T48 | 6116-6179 | Sentence | denotes | a Activating FcγR can also contribute to removal of complexes. |
| T49 | 6180-6327 | Sentence | denotes | John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response. |
| T50 | 6328-6510 | Sentence | denotes | It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency. |
| T51 | 6511-6998 | Sentence | denotes | This review focuses on the cell‐based effector functions that arise from the interaction of IgG with the classical human leukocyte FcγR.7 Although beyond the scope of this review, it should be noted that the IgG‐Fc portion dictates other aspects of an antibody’s biology, including its serum half‐life mediated by the neonatal FcR (FcRn), 3 the activation of complement C1,8 antiviral protection via the intracellular receptor TRIM219 and interactions with the Fc receptor‐like family.10 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T2 | 831-849 | Phenotype | denotes | autoimmune disease | http://purl.obolibrary.org/obo/HP_0002960 |
| T3 | 929-936 | Phenotype | denotes | allergy | http://purl.obolibrary.org/obo/HP_0012393 |
| T4 | 4898-4912 | Phenotype | denotes | cytokine storm | http://purl.obolibrary.org/obo/HP_0033041 |