PMC:7219429 / 5605-6415
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T35 | 36-43 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T29 | 19-27 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T30 | 153-155 | Disease | denotes | RS | http://purl.obolibrary.org/obo/MONDO_0010725 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T62 | 153-155 | http://purl.obolibrary.org/obo/CLO_0008882 | denotes | RS |
| T63 | 398-399 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T64 | 466-468 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T65 | 806-808 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T76 | 36-43 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T77 | 153-155 | Chemical | denotes | RS | http://purl.obolibrary.org/obo/CHEBI_73819 |
| T78 | 187-192 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T79 | 193-199 | Chemical | denotes | pentyl | http://purl.obolibrary.org/obo/CHEBI_25902 |
| T80 | 201-206 | Chemical | denotes | ethyl | http://purl.obolibrary.org/obo/CHEBI_37807|http://purl.obolibrary.org/obo/CHEBI_62801 |
| T82 | 207-212 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T83 | 213-220 | Chemical | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236 |
| T84 | 263-274 | Chemical | denotes | chloroquine | http://purl.obolibrary.org/obo/CHEBI_3638 |
| T85 | 421-424 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T86 | 504-511 | Chemical | denotes | hydroxy | http://purl.obolibrary.org/obo/CHEBI_43176 |
| T87 | 530-533 | Chemical | denotes | oxy | http://purl.obolibrary.org/obo/CHEBI_29354 |
| T88 | 536-541 | Chemical | denotes | ethyl | http://purl.obolibrary.org/obo/CHEBI_37807|http://purl.obolibrary.org/obo/CHEBI_62801 |
| T90 | 580-587 | Chemical | denotes | hydroxy | http://purl.obolibrary.org/obo/CHEBI_43176 |
| T91 | 590-597 | Chemical | denotes | methoxy | http://purl.obolibrary.org/obo/CHEBI_32772|http://purl.obolibrary.org/obo/CHEBI_44520 |
| T93 | 620-623 | Chemical | denotes | oxy | http://purl.obolibrary.org/obo/CHEBI_29354 |
| T94 | 708-711 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T95 | 747-750 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T96 | 772-781 | Chemical | denotes | macrolide | http://purl.obolibrary.org/obo/CHEBI_25106 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 390-397 | http://purl.obolibrary.org/obo/GO_0030290 | denotes | saposin |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T44 | 0-14 | Sentence | denotes | 2.1 Pdb files |
| T45 | 15-120 | Sentence | denotes | The SARS-CoV-2 spike protein trimer in the prefusion conformation was obtained from pdb file # 6VSB [20]. |
| T46 | 121-221 | Sentence | denotes | Hydroxychloroquine (CLQ-OH) is (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol. |
| T47 | 222-324 | Sentence | denotes | CLQ-OH was generated by hydroxylation of chloroquine (CLQ) and validated as previously described [10]. |
| T48 | 325-406 | Sentence | denotes | CLQ was retrieved from pdb file # 4V2O (CLQ co-crystallized with saposin B) [21]. |
| T49 | 407-687 | Sentence | denotes | Azithromycin (ATM) is (2R,3S,4R,5R,8R,10R,11R,12S,13S,14R)-11-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-2-ethyl-3,4,10-trihydroxy-13-[(2R,4R,5S,6S)-5-hydroxy-4-methoxy-4,6-dimethyloxan-2-yl]oxy-3,5,6,8,10,12,14-heptamethyl-1-oxa-6-azacyclopentadecan-15-one. |
| T50 | 688-810 | Sentence | denotes | The 3D structure of ATM was obtained from pdb file # 5UXD (ATM co-crystallized with macrolide 2′-phosphotransferase) [22]. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 189 | 5-8 | Gene | denotes | Pdb | Gene:5131 |
| 200 | 30-35 | Gene | denotes | spike | Gene:43740568 |
| 201 | 348-351 | Gene | denotes | pdb | Gene:5131 |
| 202 | 99-102 | Gene | denotes | pdb | Gene:5131 |
| 203 | 19-29 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 204 | 121-139 | Chemical | denotes | Hydroxychloroquine | MESH:D006886 |
| 205 | 141-147 | Chemical | denotes | CLQ-OH | |
| 206 | 152-220 | Chemical | denotes | (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol | |
| 207 | 222-228 | Chemical | denotes | CLQ-OH | |
| 208 | 263-274 | Chemical | denotes | chloroquine | MESH:D002738 |
| 209 | 276-279 | Chemical | denotes | CLQ | MESH:D002738 |
| 212 | 730-733 | Gene | denotes | pdb | Gene:5131 |
| 213 | 772-781 | Chemical | denotes | macrolide | MESH:D018942 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32405156-32075877-48151011 | 116-118 | 32075877 | denotes | 20 |
| 32405156-26616259-48151012 | 402-404 | 26616259 | denotes | 21 |
| T51455 | 116-118 | 32075877 | denotes | 20 |
| T56339 | 402-404 | 26616259 | denotes | 21 |