PMC:7219429 / 5579-10044
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T35 | 62-69 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T36 | 1575-1582 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T37 | 2965-2976 | Body_part | denotes | Ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T38 | 3008-3019 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T39 | 3054-3064 | Body_part | denotes | Glycolipid | http://purl.org/sig/ont/fma/fma82780 |
T40 | 3115-3125 | Body_part | denotes | glycolipid | http://purl.org/sig/ont/fma/fma82780 |
T41 | 3233-3244 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T42 | 3485-3496 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T43 | 3582-3584 | Body_part | denotes | Å3 | http://purl.org/sig/ont/fma/fma66599 |
T44 | 3826-3837 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T45 | 3960-3972 | Body_part | denotes | gangliosides | http://purl.org/sig/ont/fma/fma82816 |
T46 | 3986-3991 | Body_part | denotes | lipid | http://purl.org/sig/ont/fma/fma67264 |
T47 | 4158-4165 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T48 | 4265-4280 | Body_part | denotes | protein complex | http://purl.org/sig/ont/fma/fma67906 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T29 | 45-53 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T30 | 179-181 | Disease | denotes | RS | http://purl.obolibrary.org/obo/MONDO_0010725 |
T31 | 1508-1511 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
T33 | 1558-1566 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T34 | 1729-1732 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
T36 | 4141-4149 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T62 | 179-181 | http://purl.obolibrary.org/obo/CLO_0008882 | denotes | RS |
T63 | 424-425 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T64 | 492-494 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T65 | 832-834 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
T66 | 1137-1139 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T67 | 1373-1375 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
T68 | 1407-1412 | http://purl.obolibrary.org/obo/UBERON_0007688 | denotes | field |
T69 | 1590-1591 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T70 | 1661-1662 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T71 | 1881-1886 | http://purl.obolibrary.org/obo/UBERON_0007688 | denotes | field |
T72 | 1907-1908 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T73 | 1939-1940 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T74 | 1987-1988 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | Å |
T75 | 2157-2159 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
T76 | 2215-2217 | http://purl.obolibrary.org/obo/CLO_0008491 | denotes | ps |
T77 | 2231-2233 | http://purl.obolibrary.org/obo/CLO_0008491 | denotes | ps |
T78 | 2365-2367 | http://purl.obolibrary.org/obo/CLO_0008491 | denotes | ps |
T79 | 2410-2412 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
T80 | 2590-2591 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T81 | 3266-3274 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
T82 | 3312-3313 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T83 | 3407-3415 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
T84 | 3513-3514 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T85 | 3582-3584 | http://purl.obolibrary.org/obo/CLO_0001577 | denotes | Å3 |
T86 | 3597-3598 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | Å |
T87 | 3607-3608 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | Å |
T88 | 3617-3618 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | Å |
T89 | 3894-3896 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
T90 | 3912-3913 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T91 | 3976-3977 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T92 | 3997-4005 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
T93 | 4173-4174 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T94 | 4193-4195 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
T95 | 4265-4280 | http://purl.obolibrary.org/obo/GO_0043234 | denotes | protein complex |
T96 | 4332-4334 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
T97 | 4405-4413 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T76 | 62-69 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T77 | 179-181 | Chemical | denotes | RS | http://purl.obolibrary.org/obo/CHEBI_73819 |
T78 | 213-218 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T79 | 219-225 | Chemical | denotes | pentyl | http://purl.obolibrary.org/obo/CHEBI_25902 |
T80 | 227-232 | Chemical | denotes | ethyl | http://purl.obolibrary.org/obo/CHEBI_37807|http://purl.obolibrary.org/obo/CHEBI_62801 |
T82 | 233-238 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T83 | 239-246 | Chemical | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236 |
T84 | 289-300 | Chemical | denotes | chloroquine | http://purl.obolibrary.org/obo/CHEBI_3638 |
T85 | 447-450 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T86 | 530-537 | Chemical | denotes | hydroxy | http://purl.obolibrary.org/obo/CHEBI_43176 |
T87 | 556-559 | Chemical | denotes | oxy | http://purl.obolibrary.org/obo/CHEBI_29354 |
T88 | 562-567 | Chemical | denotes | ethyl | http://purl.obolibrary.org/obo/CHEBI_37807|http://purl.obolibrary.org/obo/CHEBI_62801 |
T90 | 606-613 | Chemical | denotes | hydroxy | http://purl.obolibrary.org/obo/CHEBI_43176 |
T91 | 616-623 | Chemical | denotes | methoxy | http://purl.obolibrary.org/obo/CHEBI_32772|http://purl.obolibrary.org/obo/CHEBI_44520 |
T93 | 646-649 | Chemical | denotes | oxy | http://purl.obolibrary.org/obo/CHEBI_29354 |
T94 | 734-737 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T95 | 773-776 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T96 | 798-807 | Chemical | denotes | macrolide | http://purl.obolibrary.org/obo/CHEBI_25106 |
T97 | 1199-1202 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T98 | 1373-1375 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
T99 | 1458-1461 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T100 | 1575-1582 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T101 | 1642-1646 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
T102 | 1696-1699 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T103 | 1700-1709 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
T104 | 2055-2061 | Chemical | denotes | ligand | http://purl.obolibrary.org/obo/CHEBI_52214 |
T105 | 2157-2159 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
T106 | 2410-2412 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
T107 | 2965-2980 | Chemical | denotes | Ganglioside GM1 | http://purl.obolibrary.org/obo/CHEBI_61048 |
T108 | 2965-2976 | Chemical | denotes | Ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T109 | 2977-2980 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_73110 |
T111 | 3008-3023 | Chemical | denotes | ganglioside GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048 |
T113 | 3008-3019 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T114 | 3020-3023 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_73110 |
T115 | 3054-3064 | Chemical | denotes | Glycolipid | http://purl.obolibrary.org/obo/CHEBI_33563 |
T116 | 3115-3125 | Chemical | denotes | glycolipid | http://purl.obolibrary.org/obo/CHEBI_33563 |
T117 | 3233-3244 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T118 | 3364-3367 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
T121 | 3368-3376 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
T122 | 3425-3433 | Chemical | denotes | ceramide | http://purl.obolibrary.org/obo/CHEBI_17761|http://purl.obolibrary.org/obo/CHEBI_52639 |
T124 | 3462-3472 | Chemical | denotes | saccharide | http://purl.obolibrary.org/obo/CHEBI_16646 |
T125 | 3485-3496 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T126 | 3547-3552 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
T127 | 3553-3562 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
T128 | 3826-3841 | Chemical | denotes | ganglioside GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048 |
T130 | 3826-3837 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T131 | 3838-3841 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_73110 |
T132 | 3868-3877 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
T133 | 3894-3896 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
T134 | 3956-3959 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
T137 | 3960-3972 | Chemical | denotes | gangliosides | http://purl.obolibrary.org/obo/CHEBI_28892 |
T138 | 3986-3991 | Chemical | denotes | lipid | http://purl.obolibrary.org/obo/CHEBI_18059 |
T139 | 4018-4021 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
T142 | 4022-4031 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
T143 | 4055-4066 | Chemical | denotes | cholesterol | http://purl.obolibrary.org/obo/CHEBI_16113 |
T144 | 4075-4088 | Chemical | denotes | sphingomyelin | http://purl.obolibrary.org/obo/CHEBI_17636|http://purl.obolibrary.org/obo/CHEBI_64583 |
T146 | 4089-4095 | Chemical | denotes | lipids | http://purl.obolibrary.org/obo/CHEBI_18059 |
T147 | 4158-4165 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T148 | 4193-4195 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
T149 | 4255-4258 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T150 | 4265-4272 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T151 | 4332-4334 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
T152 | 4377-4380 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
T155 | 4458-4464 | Chemical | denotes | lipids | http://purl.obolibrary.org/obo/CHEBI_18059 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2 | 416-423 | http://purl.obolibrary.org/obo/GO_0030290 | denotes | saposin |
LitCovid-PD-GlycoEpitope
Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
---|---|---|---|---|---|
T3 | 2977-2980 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
T4 | 3020-3023 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
T5 | 3364-3367 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
T6 | 3838-3841 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
T7 | 3956-3959 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
T8 | 4018-4021 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
T9 | 4377-4380 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T43 | 0-24 | Sentence | denotes | 2 Materials and Methods |
T44 | 26-40 | Sentence | denotes | 2.1 Pdb files |
T45 | 41-146 | Sentence | denotes | The SARS-CoV-2 spike protein trimer in the prefusion conformation was obtained from pdb file # 6VSB [20]. |
T46 | 147-247 | Sentence | denotes | Hydroxychloroquine (CLQ-OH) is (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol. |
T47 | 248-350 | Sentence | denotes | CLQ-OH was generated by hydroxylation of chloroquine (CLQ) and validated as previously described [10]. |
T48 | 351-432 | Sentence | denotes | CLQ was retrieved from pdb file # 4V2O (CLQ co-crystallized with saposin B) [21]. |
T49 | 433-713 | Sentence | denotes | Azithromycin (ATM) is (2R,3S,4R,5R,8R,10R,11R,12S,13S,14R)-11-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-2-ethyl-3,4,10-trihydroxy-13-[(2R,4R,5S,6S)-5-hydroxy-4-methoxy-4,6-dimethyloxan-2-yl]oxy-3,5,6,8,10,12,14-heptamethyl-1-oxa-6-azacyclopentadecan-15-one. |
T50 | 714-836 | Sentence | denotes | The 3D structure of ATM was obtained from pdb file # 5UXD (ATM co-crystallized with macrolide 2′-phosphotransferase) [22]. |
T51 | 838-886 | Sentence | denotes | 2.2 Molecular modelling and visualization tools |
T52 | 887-1151 | Sentence | denotes | Molecular modelling studies were performed using Hyperchem (http://www.hyper.com), Deep View/Swiss-Pdb viewer (https://spdbv.vital-it.ch) and Molegro Molecular viewer (http://molexus.io/molegro-molecular-viewer) as described previously [[16], [17], [18], [19],23]. |
T53 | 1152-1261 | Sentence | denotes | Lennard-Jones parameters and atomic charges of ATM obtained from pdb file # 5UXD were checked with Hyperchem. |
T54 | 1262-1434 | Sentence | denotes | The molecular modelling protocol consisted of docking, equilibration, and subsequent 50-ns molecular dynamics (MD) simulations with CHARMM force field [16,24] in Hyperchem. |
T55 | 1435-1647 | Sentence | denotes | The starting point for ATM docking was done by manual positioning on the NTD and receptor-binding domain (RBD) surfaces of SARS-CoV-2 spike protein (chain A) with full consideration of the properties of the drug. |
T56 | 1648-1755 | Sentence | denotes | In addition, a series of 20 randomly positioned ATM molecules covering the whole NTD surface were analysed. |
T57 | 1756-2026 | Sentence | denotes | Energy minimization of each system was then performed with the Polak-Ribière conjugate gradient algorithm, with CHARMM force field in Hyperchem, using a maximum of 3 × 105 steps, and a root-mean-square (RMS) gradient of 0.01 kcal. Å−1.mol−1 as the convergence condition. |
T58 | 2027-2368 | Sentence | denotes | According to the validation ligand-binding protocol [25], the optimized docked structures were used as the initial structures for MD simulations with the following parameters: heat time 5 ps, run time 10 ps, step size 1 fs, starting temperature 0 K, simulation temperature 300 K, temperature step 30 K, bath relaxation time step size 0.1 ps. |
T59 | 2369-2489 | Sentence | denotes | Each complex was submitted to 50-ns long MD trajectories, replicated three times, with convergent trajectories obtained. |
T60 | 2490-2551 | Sentence | denotes | Frames were saved at 10 ns intervals for subsequent analysis. |
T61 | 2552-2725 | Sentence | denotes | The final complex obtained with chain A was reintroduced in the trimeric spike structure (pdb file # 6VSB) with Molegro Molecular viewer and with Deep View Swiss-Pdb viewer. |
T62 | 2726-2775 | Sentence | denotes | Similar results were obtained with both programs. |
T63 | 2776-2889 | Sentence | denotes | The energies of interaction were extracted from the Ligand Energy Inspector function of Molegro Molecular viewer. |
T64 | 2890-2958 | Sentence | denotes | Molecular volumes were calculated by the QSAR function of Hyperchem. |
T65 | 2960-2980 | Sentence | denotes | 2.3 Ganglioside GM1 |
T66 | 2981-3439 | Sentence | denotes | The initial coordinates of ganglioside GM1 were obtained from CHARMM-GUI Glycolipid Modeler [24] (http://www.charmmgui.org/?doc=input/glycolipid), which uses the internal coordinate information of common glycosidic torsion angle values, orientates the ganglioside perpendicular to the membrane, and performs Langevin dynamics with a cylindrical restraint potential to keep the whole GM1 molecule cylindrical, particularly the membrane-embedded ceramide part. |
T67 | 3440-3575 | Sentence | denotes | In the next step, the saccharide part of the ganglioside was included in a periodic box solvated with 1128 water molecules (dimensions: |
T68 | 3576-3620 | Sentence | denotes | 34848 Å3 with x = 33 Å, y = 32 Å, z = 33 Å). |
T69 | 3621-3812 | Sentence | denotes | The system was energy-minimized 6 times switching alternatively between runs using steepest descent gradients or Polak-Ribière conjugate gradients until convergence to machine precision [16]. |
T70 | 3813-3946 | Sentence | denotes | The dimer of ganglioside GM1 interacting with 4 CLQ-OH molecules was obtained by MD simulations of a previously described model [10]. |
T71 | 3947-4096 | Sentence | denotes | To mimic GM1 gangliosides in a typical lipid raft membrane domain, two GM1 molecules were merged with eight cholesterol and two sphingomyelin lipids. |
T72 | 4097-4307 | Sentence | denotes | The whole system was optimized, merged with SARS-CoV-2 spike protein (chain A) and submitted to MD simulations with the same conditions as those used for the ATM-spike protein complex (50-ns run in triplicate). |
T73 | 4308-4465 | Sentence | denotes | For comparison, similar MD simulations were performed on an isolated GM1 dimer in the CHARMM-GUI membrane-compatible topology but without surrounding lipids. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
189 | 31-34 | Gene | denotes | Pdb | Gene:5131 |
200 | 56-61 | Gene | denotes | spike | Gene:43740568 |
201 | 374-377 | Gene | denotes | pdb | Gene:5131 |
202 | 125-128 | Gene | denotes | pdb | Gene:5131 |
203 | 45-55 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
204 | 147-165 | Chemical | denotes | Hydroxychloroquine | MESH:D006886 |
205 | 167-173 | Chemical | denotes | CLQ-OH | |
206 | 178-246 | Chemical | denotes | (RS)-2-[{4-[(7-chloroquinolin-4-yl)amino]pentyl}(ethyl)amino]ethanol | |
207 | 248-254 | Chemical | denotes | CLQ-OH | |
208 | 289-300 | Chemical | denotes | chloroquine | MESH:D002738 |
209 | 302-305 | Chemical | denotes | CLQ | MESH:D002738 |
212 | 756-759 | Gene | denotes | pdb | Gene:5131 |
213 | 798-807 | Chemical | denotes | macrolide | MESH:D018942 |
221 | 1569-1574 | Gene | denotes | spike | Gene:43740568 |
222 | 2625-2630 | Gene | denotes | spike | Gene:43740568 |
223 | 2714-2717 | Gene | denotes | Pdb | Gene:5131 |
224 | 2642-2645 | Gene | denotes | pdb | Gene:5131 |
225 | 1217-1220 | Gene | denotes | pdb | Gene:5131 |
226 | 986-989 | Gene | denotes | Pdb | Gene:5131 |
227 | 1558-1568 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
229 | 2965-2980 | Chemical | denotes | Ganglioside GM1 | MESH:D005677 |
252 | 4152-4157 | Gene | denotes | spike | Gene:43740568 |
253 | 4141-4151 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
254 | 4259-4264 | Gene | denotes | spike | Gene:43740568 |
255 | 3008-3019 | Chemical | denotes | ganglioside | MESH:D005732 |
256 | 3020-3023 | Chemical | denotes | GM1 | MESH:D005677 |
257 | 3233-3244 | Chemical | denotes | ganglioside | MESH:D005732 |
258 | 3364-3367 | Chemical | denotes | GM1 | MESH:D005677 |
259 | 3425-3433 | Chemical | denotes | ceramide | MESH:D002518 |
260 | 3462-3472 | Chemical | denotes | saccharide | MESH:D002241 |
261 | 3485-3496 | Chemical | denotes | ganglioside | MESH:D005732 |
262 | 3547-3552 | Chemical | denotes | water | MESH:D014867 |
263 | 3826-3841 | Chemical | denotes | ganglioside GM1 | MESH:D005677 |
264 | 3861-3867 | Chemical | denotes | CLQ-OH | |
265 | 3956-3959 | Chemical | denotes | GM1 | MESH:D005677 |
266 | 3960-3972 | Chemical | denotes | gangliosides | MESH:D005732 |
267 | 3986-3991 | Chemical | denotes | lipid | MESH:D008055 |
268 | 4018-4021 | Chemical | denotes | GM1 | MESH:D005677 |
269 | 4055-4066 | Chemical | denotes | cholesterol | MESH:D002784 |
270 | 4377-4380 | Chemical | denotes | GM1 | MESH:D005677 |
271 | 4458-4464 | Chemical | denotes | lipids | MESH:D008055 |
272 | 3185-3209 | Disease | denotes | glycosidic torsion angle | MESH:C563601 |
273 | 4075-4095 | Disease | denotes | sphingomyelin lipids | MESH:D052536 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32405156-32075877-48151011 | 142-144 | 32075877 | denotes | 20 |
32405156-26616259-48151012 | 428-430 | 26616259 | denotes | 21 |
32405156-31431523-48151013 | 1125-1127 | 31431523 | denotes | 16 |
32405156-26915987-48151014 | 1137-1139 | 26915987 | denotes | 18 |
32405156-21756873-48151015 | 1143-1145 | 21756873 | denotes | 19 |
32405156-28205163-48151016 | 1147-1149 | 28205163 | denotes | 23 |
32405156-31431523-48151017 | 1414-1416 | 31431523 | denotes | 16 |
32405156-30525595-48151018 | 1417-1419 | 30525595 | denotes | 24 |
32405156-30236283-48151019 | 2080-2082 | 30236283 | denotes | 25 |
32405156-30525595-48151020 | 3074-3076 | 30525595 | denotes | 24 |
32405156-31431523-48151021 | 3808-3810 | 31431523 | denotes | 16 |
T51455 | 142-144 | 32075877 | denotes | 20 |
T56339 | 428-430 | 26616259 | denotes | 21 |
T19862 | 1125-1127 | 31431523 | denotes | 16 |
T59147 | 1137-1139 | 26915987 | denotes | 18 |
T89313 | 1143-1145 | 21756873 | denotes | 19 |
T99169 | 1147-1149 | 28205163 | denotes | 23 |
T18657 | 1414-1416 | 31431523 | denotes | 16 |
T88529 | 1417-1419 | 30525595 | denotes | 24 |
T26528 | 2080-2082 | 30236283 | denotes | 25 |
T58286 | 3074-3076 | 30525595 | denotes | 24 |
T84656 | 3808-3810 | 31431523 | denotes | 16 |