PMC:7219429 / 19846-20735
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T116 | 0-10 | Body_part | denotes | Amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T117 | 38-49 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
| T118 | 93-100 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T119 | 433-443 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T120 | 663-668 | Body_part | denotes | colon | http://purl.org/sig/ont/fma/fma14543 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T13 | 663-668 | Body_part | denotes | colon | http://purl.obolibrary.org/obo/UBERON_0001155 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T74 | 76-84 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T75 | 149-157 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T76 | 385-393 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T77 | 757-760 | Disease | denotes | PAM | http://purl.obolibrary.org/obo/MONDO_0018959 |
| T78 | 873-876 | Disease | denotes | PAM | http://purl.obolibrary.org/obo/MONDO_0018959 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T197 | 261-264 | http://purl.obolibrary.org/obo/CLO_0001002 | denotes | 162 |
| T198 | 346-351 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T199 | 356-362 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T200 | 363-370 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T201 | 661-662 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T202 | 663-668 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colon |
| T203 | 778-779 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T370 | 0-10 | Chemical | denotes | Amino acid | http://purl.obolibrary.org/obo/CHEBI_33704 |
| T371 | 6-10 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T372 | 38-49 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
| T373 | 50-53 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T374 | 93-100 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T375 | 112-117 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T376 | 318-323 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T377 | 433-443 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T378 | 433-438 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T379 | 439-443 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T380 | 757-760 | Chemical | denotes | PAM | http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_60882 |
| T382 | 873-876 | Chemical | denotes | PAM | http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_60882 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T149 | 102-266 | Sentence | denotes | The first group of sequences includes clinical SARS-CoV-2 isolates from various geographical origins aligned with the reference sequence (6VSB_A, fragment 111-162). |
| T150 | 267-306 | Sentence | denotes | The QFN triad is highlighted in yellow. |
| T151 | 307-396 | Sentence | denotes | The second group of sequences includes human and animal viruses compared with SARS-CoV-2. |
| T152 | 397-539 | Sentence | denotes | Deletions are highlighted in green, amino acid changes are highlighted in blue, conserved residues of the QFN triad are highlighted in yellow. |
| T153 | 540-889 | Sentence | denotes | The degree of conservation observed in each column is symbolized by an asterisk (*) when the residue is fully conserved, a colon (:) for distinct residues with strongly similar properties (scoring > 0.5 in the Gonnet PAM 250 matrix), and a period (.) for distinct residues with weakly similar properties (scoring ≤ 0.5 in the Gonnet PAM 250 matrix). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 477 | 87-92 | Gene | denotes | spike | Gene:43740568 |
| 478 | 76-86 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 479 | 149-159 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 480 | 346-351 | Species | denotes | human | Tax:9606 |
| 481 | 385-395 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 482 | 38-49 | Chemical | denotes | ganglioside | MESH:D005732 |
| 483 | 503-506 | Chemical | denotes | QFN |