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PMC:7219429 / 16050-16795 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T87 84-91 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T88 125-132 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 179-186 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T90 406-413 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T91 612-622 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T161 94-95 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 380-381 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T163 420-422 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T164 473-476 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T165 498-499 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T261 67-70 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T262 84-91 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T263 108-111 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T264 125-132 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T265 145-148 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T266 179-186 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T267 256-259 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T268 260-268 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T269 383-386 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T270 406-413 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T271 420-422 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T272 548-551 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T273 612-622 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T274 612-617 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T275 618-622 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T276 666-669 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T115 0-144 Sentence denotes Fig. 3 Induced-fit conformational rearrangements during binding of ATM on the spike protein. (a) Docking of ATM on the spike protein (time = 0).
T116 145-236 Sentence denotes ATM is in yellow spheres, and the protein segment 134-137 is in balls and sticks rendition.
T117 237-295 Sentence denotes Three parts of the ATM molecule are marked with asterisks.
T118 296-450 Sentence denotes The orientation of the side chains of residues 134-137 is shown under the complex. (b) ATM bound to the spike protein after MD simulations (time = 50 ns).
T119 451-530 Sentence denotes Note that the complex has evolved according to a typical induced-fit mechanism.
T120 531-594 Sentence denotes The asterisks on ATM help visualize its conformational changes.
T121 595-745 Sentence denotes Reorientation of amino acid side chains is also clearly visible in the ATM-spike complex and in the isolated 134-137 fragment shown under the complex.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
392 78-83 Gene denotes spike Gene:43740568
393 119-124 Gene denotes spike Gene:43740568
394 400-405 Gene denotes spike Gene:43740568
395 670-675 Gene denotes spike Gene:43740568