
PMC:7219429 / 16050-16795
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T87 | 84-91 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T88 | 125-132 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T89 | 179-186 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T90 | 406-413 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T91 | 612-622 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T161 | 94-95 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T162 | 380-381 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T163 | 420-422 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
T164 | 473-476 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T165 | 498-499 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T261 | 67-70 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T262 | 84-91 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T263 | 108-111 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T264 | 125-132 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T265 | 145-148 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T266 | 179-186 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T267 | 256-259 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T268 | 260-268 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
T269 | 383-386 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T270 | 406-413 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T271 | 420-422 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
T272 | 548-551 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
T273 | 612-622 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T274 | 612-617 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T275 | 618-622 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T276 | 666-669 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T115 | 0-144 | Sentence | denotes | Fig. 3 Induced-fit conformational rearrangements during binding of ATM on the spike protein. (a) Docking of ATM on the spike protein (time = 0). |
T116 | 145-236 | Sentence | denotes | ATM is in yellow spheres, and the protein segment 134-137 is in balls and sticks rendition. |
T117 | 237-295 | Sentence | denotes | Three parts of the ATM molecule are marked with asterisks. |
T118 | 296-450 | Sentence | denotes | The orientation of the side chains of residues 134-137 is shown under the complex. (b) ATM bound to the spike protein after MD simulations (time = 50 ns). |
T119 | 451-530 | Sentence | denotes | Note that the complex has evolved according to a typical induced-fit mechanism. |
T120 | 531-594 | Sentence | denotes | The asterisks on ATM help visualize its conformational changes. |
T121 | 595-745 | Sentence | denotes | Reorientation of amino acid side chains is also clearly visible in the ATM-spike complex and in the isolated 134-137 fragment shown under the complex. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
392 | 78-83 | Gene | denotes | spike | Gene:43740568 |
393 | 119-124 | Gene | denotes | spike | Gene:43740568 |
394 | 400-405 | Gene | denotes | spike | Gene:43740568 |
395 | 670-675 | Gene | denotes | spike | Gene:43740568 |