PMC:7219429 / 15171-16049
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T83 | 47-54 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T84 | 137-144 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T85 | 330-337 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T86 | 511-518 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T9 | 113-116 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
| T10 | 251-254 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
| T11 | 608-611 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T52 | 30-38 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T53 | 109-112 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T55 | 120-128 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T56 | 247-250 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T58 | 444-452 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T59 | 619-622 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T151 | 72-73 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T152 | 151-152 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T153 | 264-265 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T154 | 411-412 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T155 | 525-526 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T156 | 528-529 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T157 | 637-638 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T158 | 701-702 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T159 | 797-798 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T160 | 827-828 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T252 | 47-54 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T253 | 66-69 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T254 | 92-95 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T255 | 137-144 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T256 | 300-303 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T257 | 330-337 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T258 | 511-518 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T259 | 770-773 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T260 | 846-849 | Chemical | denotes | ATM | http://purl.obolibrary.org/obo/CHEBI_2955 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T110 | 233-325 | Sentence | denotes | Note that the NTD tip displays a complementary landing surface for ATM (highlighted in red). |
| T111 | 326-578 | Sentence | denotes | The protein stretch 134-138, which contains the QFN triad, is highlighted in green. (b) The trimeric structure of the SARS-CoV-2 spike is represented in surface rendition with subunit (protein chain A, B and C) in cyan, yellow and purple, respectively. |
| T112 | 579-660 | Sentence | denotes | AMT (in red) is bound to the tip of the NTD domain of the A subunit (left panel). |
| T113 | 661-782 | Sentence | denotes | The ribbon structure of the cyan (chain A) subunit is shown in the right panel. (c) Above views of the spike-ATM complex. |
| T114 | 783-878 | Sentence | denotes | Note that the B and C subunits also display a fully accessible ATM binding site (red asterisk). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 379 | 131-136 | Gene | denotes | spike | Gene:43740568 |
| 380 | 764-769 | Gene | denotes | spike | Gene:43740568 |
| 381 | 41-46 | Gene | denotes | spike | Gene:43740568 |
| 382 | 797-804 | Gene | denotes | B and C | |
| 383 | 455-460 | Gene | denotes | spike | Gene:43740568 |
| 384 | 528-535 | Gene | denotes | B and C | |
| 385 | 30-40 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 386 | 120-130 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 387 | 444-454 | Species | denotes | SARS-CoV-2 | Tax:2697049 |