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PMC:7219429 / 11105-12083 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T57 54-61 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T58 89-94 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T59 351-362 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T60 603-605 Body_part denotes Å3 http://purl.org/sig/ont/fma/fma66599
T61 681-688 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T62 811-822 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T63 915-926 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 180-184 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 37-45 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 948-951 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T110 71-72 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 180-184 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T112 278-279 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T113 394-395 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 448-449 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 603-605 http://purl.obolibrary.org/obo/CLO_0001577 denotes Å3
T116 702-703 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 744-745 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T118 764-765 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T190 14-26 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T191 28-31 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T192 54-61 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T193 74-77 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T194 125-127 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T196 147-156 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T197 207-213 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T199 224-232 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T200 242-248 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T201 257-265 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T202 320-323 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T203 332-342 Chemical denotes saccharide http://purl.obolibrary.org/obo/CHEBI_16646
T204 351-366 Chemical denotes ganglioside GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048
T206 351-362 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T207 363-366 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_73110
T208 531-534 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T209 543-553 Chemical denotes saccharide http://purl.obolibrary.org/obo/CHEBI_16646
T210 562-565 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T213 681-688 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T214 811-822 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T215 915-926 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T14 363-366 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T15 562-565 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T83 143-367 Sentence denotes The molecules are shown in chemical, tube and sphere rendering (carbon in green, nitrogen in blue, oxygen in red, hydrogen in white). (b) Molecular structure similarity between ATM and the saccharide part of ganglioside GM1.
T84 368-507 Sentence denotes Both structures can adopt a globular shape the surface of which is covered with a patchwork of OH (arrows 1 and 2) and CH groups (arrow 3).
T85 508-787 Sentence denotes The volume occupied by ATM and the saccharide part of GM1 can be estimated to be 2082 and 2293 Å3, respectively. (c) front and above views of the trimeric spike, each spike protein subunit with a distinct surface colour (cyan for chain A, yellow for chain B, purple for chain C).
T86 788-910 Sentence denotes Atoms belonging to the ganglioside-binding domain of each subunit are visible underneath the slightly transparent surface.
T87 911-978 Sentence denotes The ganglioside-binding domains, the NTD and the RBD are indicated.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
294 467-481 Gene denotes arrows 1 and 2
295 675-680 Gene denotes spike Gene:43740568
296 663-668 Gene denotes spike Gene:43740568
297 48-53 Gene denotes spike Gene:43740568
298 37-47 Species denotes SARS-CoV-2 Tax:2697049
299 14-26 Chemical denotes azithromycin MESH:D017963
300 115-120 Chemical denotes N-pyr MESH:D009242
301 125-131 Chemical denotes Ac-pyr
302 207-213 Chemical denotes carbon MESH:D002244
303 224-232 Chemical denotes nitrogen MESH:D009584
304 242-248 Chemical denotes oxygen MESH:D010100
305 257-265 Chemical denotes hydrogen MESH:D006859
306 332-342 Chemical denotes saccharide MESH:D002241
307 351-362 Chemical denotes ganglioside MESH:D005732
308 363-366 Chemical denotes GM1 MESH:D005677
309 562-565 Chemical denotes GM1 MESH:D005677
310 811-822 Chemical denotes ganglioside MESH:D005732
311 915-926 Chemical denotes ganglioside MESH:D005732