PMC:7216762 / 7787-9232
Annnotations
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T23 | 25-33 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T24 | 66-74 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T25 | 191-199 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T26 | 965-973 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T27 | 1316-1329 | Disease | denotes | infections in | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T40 | 91-92 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T41 | 158-159 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T42 | 298-299 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T43 | 430-433 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T44 | 509-514 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T45 | 563-564 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T46 | 836-837 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T47 | 853-858 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T48 | 862-867 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T49 | 987-989 | http://purl.obolibrary.org/obo/CLO_0008149 | denotes | Ne |
| T50 | 1215-1224 | http://purl.obolibrary.org/obo/UBERON_0001353 | denotes | posterior |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T13 | 93-98 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T14 | 987-989 | Chemical | denotes | Ne | http://purl.obolibrary.org/obo/CHEBI_33310 |
| T15 | 1203-1206 | Chemical | denotes | HPD | http://purl.obolibrary.org/obo/CHEBI_18355 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 480-492 | http://purl.obolibrary.org/obo/GO_0000003 | denotes | reproduction |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T52 | 0-35 | Sentence | denotes | Phylogenetic Analysis of SARS-CoV-2 |
| T53 | 36-355 | Sentence | denotes | Even before the appearance of COVID-19 cases in Italy, a group led by Prof. Zehender at the University of Milan performed a temporal reconstruction of the SARS-CoV-2 phylogeny.7 The results suggest that the epidemic originated between October and November 2019, a few weeks before the identification of the first cases. |
| T54 | 356-664 | Sentence | denotes | We now know that this is spot on, since the first confirmed case reported has been fixed at November 17th.8 Analysis of the reproduction number R of the virus (i.e., the number of secondary cases induced by a single infected individual) increased in December 2019, leading to the current pandemic (Figure 2). |
| T55 | 665-925 | Sentence | denotes | R usually decreases over the course of an epidemic, due to the reduced number of susceptible individuals, but in this case the increase might be due to the acquisition of a more efficient human-to-human transmission trait (i.e., via the now infamous droplets). |
| T56 | 926-1023 | Sentence | denotes | Figure 2 Bayesian skyline plot of the SARS-CoV-2 outbreak.7 Ne is the effective population size. |
| T57 | 1024-1108 | Sentence | denotes | Time 0 = January 30, 2020, then 18.2 days, 36.5 days, 54.7 days, and 73 days before. |
| T58 | 1109-1267 | Sentence | denotes | The thick solid line represents the median value of the estimates, and the blue area, the 95% HPD (higher posterior density interval, i.e. credible interval). |
| T59 | 1268-1363 | Sentence | denotes | Apparent is the rapid increase in the number of infections in the second half of December 2019. |
| T60 | 1364-1403 | Sentence | denotes | Reprinted with permission from ref (7). |
| T61 | 1404-1445 | Sentence | denotes | Copyright 2020, John Wiley and Sons, Inc. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 81 | 191-201 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 82 | 853-858 | Species | denotes | human | Tax:9606 |
| 83 | 862-867 | Species | denotes | human | Tax:9606 |
| 84 | 66-74 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 85 | 572-580 | Disease | denotes | infected | MESH:D007239 |
| 90 | 965-975 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 91 | 1203-1206 | Disease | denotes | HPD | MESH:D004421 |
| 92 | 1316-1326 | Disease | denotes | infections | MESH:D007239 |
| 93 | 1420-1430 | Disease | denotes | John Wiley | MESH:D010283 |