PMC:7216760 / 1076-2794 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7216760","sourcedb":"PMC","sourceid":"7216760","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7216760","text":"As first reported in December 2019, a novel coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), caused an outbreak of atypical pneumonia in Wuhan, China, that has since spread globally.1 The disease caused by this new virus has been named coronavirus disease-2019 (COVID-19) and on March 11, 2020 was declared a global pandemic by the World Health Organization (WHO).1 Currently, there are seven known human coronaviruses classified into two broad genera of alpha- and beta-coronaviruses. The alpha-coronaviruses comprise HCoV-NL63 and HCoV-229E, while the beta-coronaviruses comprise HCoV-OC43, HCoV-HKU1, SARS, Middle East Respiratory Syndrome virus (MERS), and SARS-CoV-2.2 The alpha-coronaviruses and HCoV-OC43 and HCoV-HKU1 are among the causes of the common cold and have been circulating in human and animal populations for many years.2 All these viruses originate from a common ancestor and enter the human population through zoonotic transfer or species jumping.3 Although the first four known human coronaviruses originated from birds, SARS, MERS, and SARS-CoV-2 appear, on the basis of gene sequence analysis, to have originated from bats.4 However, in each case, these more recent viruses appear to have been transmitted through an intermediate host such as a civet, a small nocturnal mammal native to tropical Asia and Africa (SARS), a camel (MERS), or a pangolin (SARS-CoV-2) after acquiring additional mutations.2 Bats harbor more strains of coronavirus than other mammals, estimated to range from 5000 to 10,000 distinct subtypes.5 Therefore, additional epidemics are highly likely to occur in the future due to the abundant number of coronaviruses present in the bat population.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":1120,"end":1124},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma74402"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T10","span":{"begin":57,"end":104},"obj":"Disease"},{"id":"T11","span":{"begin":57,"end":90},"obj":"Disease"},{"id":"T12","span":{"begin":106,"end":114},"obj":"Disease"},{"id":"T13","span":{"begin":150,"end":159},"obj":"Disease"},{"id":"T14","span":{"begin":262,"end":286},"obj":"Disease"},{"id":"T15","span":{"begin":288,"end":296},"obj":"Disease"},{"id":"T16","span":{"begin":630,"end":634},"obj":"Disease"},{"id":"T17","span":{"begin":687,"end":695},"obj":"Disease"},{"id":"T18","span":{"begin":780,"end":791},"obj":"Disease"},{"id":"T19","span":{"begin":1069,"end":1073},"obj":"Disease"},{"id":"T20","span":{"begin":1085,"end":1093},"obj":"Disease"},{"id":"T21","span":{"begin":1363,"end":1367},"obj":"Disease"},{"id":"T22","span":{"begin":1401,"end":1409},"obj":"Disease"}],"attributes":[{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A18","pred":"mondo_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/MONDO_0005709"},{"id":"A19","pred":"mondo_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A20","pred":"mondo_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T8","span":{"begin":36,"end":37},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T9","span":{"begin":182,"end":185},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T10","span":{"begin":241,"end":246},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T11","span":{"begin":247,"end":250},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T12","span":{"begin":311,"end":313},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T13","span":{"begin":333,"end":334},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T14","span":{"begin":371,"end":383},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T15","span":{"begin":425,"end":430},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T16","span":{"begin":669,"end":674},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T17","span":{"begin":821,"end":826},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T18","span":{"begin":831,"end":837},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_33208"},{"id":"T19","span":{"begin":877,"end":884},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T20","span":{"begin":900,"end":901},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T21","span":{"begin":932,"end":937},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T22","span":{"begin":1026,"end":1031},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T23","span":{"begin":1120,"end":1124},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T24","span":{"begin":1168,"end":1172},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T25","span":{"begin":1216,"end":1223},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T26","span":{"begin":1293,"end":1294},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T27","span":{"begin":1302,"end":1303},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T28","span":{"begin":1370,"end":1371},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T29","span":{"begin":1372,"end":1377},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9837"},{"id":"T30","span":{"begin":1389,"end":1390},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T31","span":{"begin":1452,"end":1456},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T32","span":{"begin":1703,"end":1706},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"}],"attributes":[{"subj":"T8","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T4","span":{"begin":481,"end":486},"obj":"Chemical"},{"id":"T5","span":{"begin":492,"end":496},"obj":"Chemical"},{"id":"T6","span":{"begin":516,"end":521},"obj":"Chemical"},{"id":"T7","span":{"begin":580,"end":584},"obj":"Chemical"},{"id":"T8","span":{"begin":704,"end":709},"obj":"Chemical"}],"attributes":[{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_30216"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_30216"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_30216"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":150,"end":159},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T9","span":{"begin":0,"end":511},"obj":"Sentence"},{"id":"T10","span":{"begin":512,"end":1718},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T9","pred":"source","obj":"LitCovid-sentences"},{"subj":"T10","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"54","span":{"begin":38,"end":55},"obj":"Species"},{"id":"55","span":{"begin":57,"end":104},"obj":"Species"},{"id":"56","span":{"begin":106,"end":116},"obj":"Species"},{"id":"57","span":{"begin":425,"end":430},"obj":"Species"},{"id":"58","span":{"begin":431,"end":444},"obj":"Species"},{"id":"59","span":{"begin":492,"end":510},"obj":"Species"},{"id":"60","span":{"begin":522,"end":535},"obj":"Species"},{"id":"61","span":{"begin":545,"end":554},"obj":"Species"},{"id":"62","span":{"begin":559,"end":568},"obj":"Species"},{"id":"63","span":{"begin":580,"end":598},"obj":"Species"},{"id":"64","span":{"begin":608,"end":617},"obj":"Species"},{"id":"65","span":{"begin":619,"end":628},"obj":"Species"},{"id":"66","span":{"begin":687,"end":697},"obj":"Species"},{"id":"67","span":{"begin":710,"end":723},"obj":"Species"},{"id":"68","span":{"begin":728,"end":737},"obj":"Species"},{"id":"69","span":{"begin":742,"end":751},"obj":"Species"},{"id":"70","span":{"begin":821,"end":826},"obj":"Species"},{"id":"71","span":{"begin":932,"end":937},"obj":"Species"},{"id":"72","span":{"begin":1026,"end":1031},"obj":"Species"},{"id":"73","span":{"begin":1032,"end":1045},"obj":"Species"},{"id":"74","span":{"begin":1085,"end":1095},"obj":"Species"},{"id":"75","span":{"begin":1320,"end":1326},"obj":"Species"},{"id":"76","span":{"begin":1372,"end":1377},"obj":"Species"},{"id":"77","span":{"begin":1401,"end":1411},"obj":"Species"},{"id":"78","span":{"begin":1480,"end":1491},"obj":"Species"},{"id":"79","span":{"begin":1674,"end":1687},"obj":"Species"},{"id":"80","span":{"begin":150,"end":159},"obj":"Disease"},{"id":"81","span":{"begin":262,"end":286},"obj":"Disease"},{"id":"82","span":{"begin":288,"end":296},"obj":"Disease"},{"id":"83","span":{"begin":676,"end":680},"obj":"Disease"},{"id":"84","span":{"begin":787,"end":791},"obj":"Disease"},{"id":"85","span":{"begin":957,"end":974},"obj":"Disease"},{"id":"86","span":{"begin":1075,"end":1079},"obj":"Disease"},{"id":"87","span":{"begin":1379,"end":1383},"obj":"Disease"}],"attributes":[{"id":"A54","pred":"tao:has_database_id","subj":"54","obj":"Tax:2697049"},{"id":"A55","pred":"tao:has_database_id","subj":"55","obj":"Tax:2697049"},{"id":"A56","pred":"tao:has_database_id","subj":"56","obj":"Tax:2697049"},{"id":"A57","pred":"tao:has_database_id","subj":"57","obj":"Tax:9606"},{"id":"A58","pred":"tao:has_database_id","subj":"58","obj":"Tax:11118"},{"id":"A59","pred":"tao:has_database_id","subj":"59","obj":"Tax:694002"},{"id":"A60","pred":"tao:has_database_id","subj":"60","obj":"Tax:11118"},{"id":"A61","pred":"tao:has_database_id","subj":"61","obj":"Tax:277944"},{"id":"A62","pred":"tao:has_database_id","subj":"62","obj":"Tax:11137"},{"id":"A63","pred":"tao:has_database_id","subj":"63","obj":"Tax:694002"},{"id":"A64","pred":"tao:has_database_id","subj":"64","obj":"Tax:31631"},{"id":"A65","pred":"tao:has_database_id","subj":"65","obj":"Tax:290028"},{"id":"A66","pred":"tao:has_database_id","subj":"66","obj":"Tax:2697049"},{"id":"A67","pred":"tao:has_database_id","subj":"67","obj":"Tax:11118"},{"id":"A68","pred":"tao:has_database_id","subj":"68","obj":"Tax:31631"},{"id":"A69","pred":"tao:has_database_id","subj":"69","obj":"Tax:290028"},{"id":"A70","pred":"tao:has_database_id","subj":"70","obj":"Tax:9606"},{"id":"A71","pred":"tao:has_database_id","subj":"71","obj":"Tax:9606"},{"id":"A72","pred":"tao:has_database_id","subj":"72","obj":"Tax:9606"},{"id":"A73","pred":"tao:has_database_id","subj":"73","obj":"Tax:11118"},{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"Tax:2697049"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"Tax:9606"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"Tax:9837"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"Tax:2697049"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"Tax:11118"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"Tax:11118"},{"id":"A80","pred":"tao:has_database_id","subj":"80","obj":"MESH:D011014"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"MESH:C000657245"},{"id":"A82","pred":"tao:has_database_id","subj":"82","obj":"MESH:C000657245"},{"id":"A83","pred":"tao:has_database_id","subj":"83","obj":"MESH:D018352"},{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"MESH:D000067390"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"MESH:D015047"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"MESH:D018352"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"MESH:D018352"},{"subj":"54","pred":"source","obj":"LitCovid-PubTator"},{"subj":"55","pred":"source","obj":"LitCovid-PubTator"},{"subj":"56","pred":"source","obj":"LitCovid-PubTator"},{"subj":"57","pred":"source","obj":"LitCovid-PubTator"},{"subj":"58","pred":"source","obj":"LitCovid-PubTator"},{"subj":"59","pred":"source","obj":"LitCovid-PubTator"},{"subj":"60","pred":"source","obj":"LitCovid-PubTator"},{"subj":"61","pred":"source","obj":"LitCovid-PubTator"},{"subj":"62","pred":"source","obj":"LitCovid-PubTator"},{"subj":"63","pred":"source","obj":"LitCovid-PubTator"},{"subj":"64","pred":"source","obj":"LitCovid-PubTator"},{"subj":"65","pred":"source","obj":"LitCovid-PubTator"},{"subj":"66","pred":"source","obj":"LitCovid-PubTator"},{"subj":"67","pred":"source","obj":"LitCovid-PubTator"},{"subj":"68","pred":"source","obj":"LitCovid-PubTator"},{"subj":"69","pred":"source","obj":"LitCovid-PubTator"},{"subj":"70","pred":"source","obj":"LitCovid-PubTator"},{"subj":"71","pred":"source","obj":"LitCovid-PubTator"},{"subj":"72","pred":"source","obj":"LitCovid-PubTator"},{"subj":"73","pred":"source","obj":"LitCovid-PubTator"},{"subj":"74","pred":"source","obj":"LitCovid-PubTator"},{"subj":"75","pred":"source","obj":"LitCovid-PubTator"},{"subj":"76","pred":"source","obj":"LitCovid-PubTator"},{"subj":"77","pred":"source","obj":"LitCovid-PubTator"},{"subj":"78","pred":"source","obj":"LitCovid-PubTator"},{"subj":"79","pred":"source","obj":"LitCovid-PubTator"},{"subj":"80","pred":"source","obj":"LitCovid-PubTator"},{"subj":"81","pred":"source","obj":"LitCovid-PubTator"},{"subj":"82","pred":"source","obj":"LitCovid-PubTator"},{"subj":"83","pred":"source","obj":"LitCovid-PubTator"},{"subj":"84","pred":"source","obj":"LitCovid-PubTator"},{"subj":"85","pred":"source","obj":"LitCovid-PubTator"},{"subj":"86","pred":"source","obj":"LitCovid-PubTator"},{"subj":"87","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93a0ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#baec93"},{"id":"LitCovid-PD-CLO","color":"#ec93d4"},{"id":"LitCovid-PD-CHEBI","color":"#93ece9"},{"id":"LitCovid-PD-HP","color":"#eccf93"},{"id":"LitCovid-sentences","color":"#b593ec"},{"id":"LitCovid-PubTator","color":"#93ec9b"}]}]}}