PMC:7216760 / 10311-11816
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T65 | 17-20 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T66 | 37-45 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T67 | 136-144 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T68 | 221-231 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T69 | 248-255 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T70 | 339-349 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T71 | 352-359 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T72 | 428-435 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T73 | 458-468 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T74 | 471-478 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T75 | 539-549 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T76 | 563-570 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T77 | 590-597 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T78 | 658-663 | Body_part | denotes | lipid | http://purl.org/sig/ont/fma/fma67264 |
| T79 | 703-707 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T80 | 716-723 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T81 | 766-773 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T82 | 807-815 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T83 | 912-915 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T84 | 926-929 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T85 | 1082-1086 | Body_part | denotes | ExoN | http://purl.org/sig/ont/fma/fma84120 |
| T86 | 1149-1152 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T87 | 1202-1205 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T88 | 1222-1228 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T23 | 598-603 | Body_part | denotes | shell | http://purl.obolibrary.org/obo/UBERON_0006612 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T76 | 0-8 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T77 | 1211-1219 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T118 | 105-107 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T119 | 105-107 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T120 | 175-183 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | Membrane |
| T121 | 289-290 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T122 | 360-363 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T123 | 524-529 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T124 | 577-578 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T125 | 615-620 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T126 | 656-657 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T127 | 703-707 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T128 | 737-745 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T129 | 956-957 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T130 | 1243-1244 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T131 | 1501-1503 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T132 | 1501-1503 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T57 | 37-45 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T58 | 105-107 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T59 | 136-144 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T60 | 221-231 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T61 | 221-226 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T62 | 227-231 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T63 | 248-255 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T64 | 339-349 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T65 | 339-344 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T66 | 345-349 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T67 | 352-359 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T68 | 428-435 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T69 | 458-468 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T70 | 458-463 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T71 | 464-468 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T72 | 471-478 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T73 | 539-549 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T74 | 539-544 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T75 | 545-549 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T76 | 563-570 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T77 | 590-597 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T78 | 658-663 | Chemical | denotes | lipid | http://purl.obolibrary.org/obo/CHEBI_18059 |
| T79 | 716-723 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T80 | 766-773 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T81 | 807-815 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T82 | 1501-1503 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T22 | 313-329 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T23 | 1104-1113 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
| T24 | 1391-1408 | http://purl.obolibrary.org/obo/GO_0019079 | denotes | viral replication |
| T25 | 1391-1408 | http://purl.obolibrary.org/obo/GO_0019058 | denotes | viral replication |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T38 | 0-330 | Sentence | denotes | SARS-CoV-2 viral RNA encodes several proteins that are potentially druggable targets (Figure 1 and Table S2), including four structural proteins: the Spike (S), Envelope (E), Membrane (M), and Nucleocapsid (N).1 The 1273 amino acid, 141 kDa, Spike protein is heavily N-glycosylated and is a major inducer of host immune responses. |
| T39 | 331-450 | Sentence | denotes | The 222 amino acid M protein has three transmembrane domains and is the most abundant structural protein in the virion. |
| T40 | 451-530 | Sentence | denotes | The 75 amino acid E protein is important for assembly and release of the virus. |
| T41 | 531-708 | Sentence | denotes | The 419 amino acid nucleocapsid protein forms a protective protein shell around the virus genetic material and is encased in a lipid envelope that is usurped from the host cell. |
| T42 | 709-774 | Sentence | denotes | Matrix protein connects the membrane to the nucleocapsid protein. |
| T43 | 775-1088 | Sentence | denotes | There are also 16 nonstructural proteins (nsp1–16)1 including several for which there are X-ray crystallography-derived structural data: RNA dependent RNA polymerase (nsp12, RdRp), a papain-like protease (nsp3, PLpro), the main protease (nsp5, 3CLpro, or Mpro), and exonuclease/N7-methyltransferase (nsp14, ExoN). |
| T44 | 1089-1206 | Sentence | denotes | RdRp catalyzes synthesis of the full length negative-strand RNA template used by RdRp to make more viral genomic RNA. |
| T45 | 1207-1505 | Sentence | denotes | The SARS-CoV-2 genome also contains a number of open reading frames (ORFs): namely, ORF 1a proposed to encode nsp1 to nsp11; ORF1b, is proposed to encode nsp12 to nsp16, essential for viral replication, and ORFs 3a, 3b, 6, 7a, 7b, 8, 9a, 9b, and 10, which encode for accessory proteins1 (Table S2). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 325 | 157-158 | Gene | denotes | S | Gene:43740568 |
| 326 | 161-169 | Gene | denotes | Envelope | Gene:43740570 |
| 327 | 171-172 | Gene | denotes | E | Gene:43740570 |
| 328 | 175-183 | Gene | denotes | Membrane | Gene:43740571 |
| 329 | 185-186 | Gene | denotes | M | Gene:43740571 |
| 330 | 193-205 | Gene | denotes | Nucleocapsid | Gene:43740575 |
| 331 | 207-208 | Gene | denotes | N | Gene:43740575 |
| 332 | 817-821 | Gene | denotes | nsp1 | Gene:10045 |
| 333 | 949-953 | Gene | denotes | RdRp | Gene:43740578 |
| 334 | 980-984 | Gene | denotes | nsp3 | Gene:10044 |
| 335 | 1013-1017 | Gene | denotes | nsp5 | Gene:92521 |
| 336 | 1030-1034 | Gene | denotes | Mpro | Gene:8673700 |
| 337 | 1089-1093 | Gene | denotes | RdRp | Gene:43740578 |
| 338 | 1317-1321 | Gene | denotes | nsp1 | Gene:10045 |
| 339 | 737-745 | Gene | denotes | membrane | Gene:43740571 |
| 340 | 242-247 | Gene | denotes | Spike | Gene:43740568 |
| 341 | 150-155 | Gene | denotes | Spike | Gene:43740568 |
| 342 | 753-765 | Gene | denotes | nucleocapsid | Gene:43740575 |
| 343 | 550-562 | Gene | denotes | nucleocapsid | Gene:43740575 |
| 344 | 664-672 | Gene | denotes | envelope | Gene:43740570 |
| 345 | 1170-1174 | Gene | denotes | RdRp | Gene:43740578 |
| 346 | 469-470 | Gene | denotes | E | Gene:43740570 |
| 347 | 350-351 | Gene | denotes | M | Gene:43740571 |
| 348 | 267-268 | Gene | denotes | N | Gene:43740575 |
| 349 | 0-10 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 350 | 1211-1221 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 351 | 658-663 | Chemical | denotes | lipid | MESH:D008055 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32388976-32015508-144047 | 210-211 | 32015508 | denotes | 1 |
| 32388976-32015508-144048 | 825-826 | 32015508 | denotes | 1 |
| 32388976-32015508-144049 | 1492-1493 | 32015508 | denotes | 1 |