PMC:7216760 / 10288-11855
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T65 | 40-43 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T66 | 60-68 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T67 | 159-167 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T68 | 244-254 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T69 | 271-278 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T70 | 362-372 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T71 | 375-382 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T72 | 451-458 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T73 | 481-491 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T74 | 494-501 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T75 | 562-572 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T76 | 586-593 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T77 | 613-620 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T78 | 681-686 | Body_part | denotes | lipid | http://purl.org/sig/ont/fma/fma67264 |
| T79 | 726-730 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T80 | 739-746 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T81 | 789-796 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T82 | 830-838 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T83 | 935-938 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T84 | 949-952 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T85 | 1105-1109 | Body_part | denotes | ExoN | http://purl.org/sig/ont/fma/fma84120 |
| T86 | 1172-1175 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T87 | 1225-1228 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T88 | 1245-1251 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T89 | 1558-1566 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T23 | 621-626 | Body_part | denotes | shell | http://purl.obolibrary.org/obo/UBERON_0006612 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T76 | 23-31 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T77 | 1234-1242 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T78 | 1539-1547 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T118 | 128-130 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T119 | 128-130 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T120 | 198-206 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | Membrane |
| T121 | 312-313 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T122 | 383-386 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T123 | 547-552 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T124 | 600-601 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T125 | 638-643 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T126 | 679-680 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T127 | 726-730 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T128 | 760-768 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T129 | 979-980 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T130 | 1266-1267 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T131 | 1524-1526 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T132 | 1524-1526 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T57 | 60-68 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T58 | 128-130 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T59 | 159-167 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T60 | 244-254 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T61 | 244-249 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T62 | 250-254 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T63 | 271-278 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T64 | 362-372 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T65 | 362-367 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T66 | 368-372 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T67 | 375-382 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T68 | 451-458 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T69 | 481-491 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T70 | 481-486 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T71 | 487-491 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T72 | 494-501 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T73 | 562-572 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T74 | 562-567 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T75 | 568-572 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T76 | 586-593 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T77 | 613-620 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T78 | 681-686 | Chemical | denotes | lipid | http://purl.obolibrary.org/obo/CHEBI_18059 |
| T79 | 739-746 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T80 | 789-796 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T81 | 830-838 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T82 | 1524-1526 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T83 | 1558-1566 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T22 | 336-352 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T23 | 1127-1136 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
| T24 | 1414-1431 | http://purl.obolibrary.org/obo/GO_0019079 | denotes | viral replication |
| T25 | 1414-1431 | http://purl.obolibrary.org/obo/GO_0019058 | denotes | viral replication |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T37 | 0-22 | Sentence | denotes | Potential Drug Targets |
| T38 | 23-353 | Sentence | denotes | SARS-CoV-2 viral RNA encodes several proteins that are potentially druggable targets (Figure 1 and Table S2), including four structural proteins: the Spike (S), Envelope (E), Membrane (M), and Nucleocapsid (N).1 The 1273 amino acid, 141 kDa, Spike protein is heavily N-glycosylated and is a major inducer of host immune responses. |
| T39 | 354-473 | Sentence | denotes | The 222 amino acid M protein has three transmembrane domains and is the most abundant structural protein in the virion. |
| T40 | 474-553 | Sentence | denotes | The 75 amino acid E protein is important for assembly and release of the virus. |
| T41 | 554-731 | Sentence | denotes | The 419 amino acid nucleocapsid protein forms a protective protein shell around the virus genetic material and is encased in a lipid envelope that is usurped from the host cell. |
| T42 | 732-797 | Sentence | denotes | Matrix protein connects the membrane to the nucleocapsid protein. |
| T43 | 798-1111 | Sentence | denotes | There are also 16 nonstructural proteins (nsp1–16)1 including several for which there are X-ray crystallography-derived structural data: RNA dependent RNA polymerase (nsp12, RdRp), a papain-like protease (nsp3, PLpro), the main protease (nsp5, 3CLpro, or Mpro), and exonuclease/N7-methyltransferase (nsp14, ExoN). |
| T44 | 1112-1229 | Sentence | denotes | RdRp catalyzes synthesis of the full length negative-strand RNA template used by RdRp to make more viral genomic RNA. |
| T45 | 1230-1528 | Sentence | denotes | The SARS-CoV-2 genome also contains a number of open reading frames (ORFs): namely, ORF 1a proposed to encode nsp1 to nsp11; ORF1b, is proposed to encode nsp12 to nsp16, essential for viral replication, and ORFs 3a, 3b, 6, 7a, 7b, 8, 9a, 9b, and 10, which encode for accessory proteins1 (Table S2). |
| T46 | 1529-1567 | Sentence | denotes | Figure 1 SARS-CoV-2 encoded proteins. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 325 | 180-181 | Gene | denotes | S | Gene:43740568 |
| 326 | 184-192 | Gene | denotes | Envelope | Gene:43740570 |
| 327 | 194-195 | Gene | denotes | E | Gene:43740570 |
| 328 | 198-206 | Gene | denotes | Membrane | Gene:43740571 |
| 329 | 208-209 | Gene | denotes | M | Gene:43740571 |
| 330 | 216-228 | Gene | denotes | Nucleocapsid | Gene:43740575 |
| 331 | 230-231 | Gene | denotes | N | Gene:43740575 |
| 332 | 840-844 | Gene | denotes | nsp1 | Gene:10045 |
| 333 | 972-976 | Gene | denotes | RdRp | Gene:43740578 |
| 334 | 1003-1007 | Gene | denotes | nsp3 | Gene:10044 |
| 335 | 1036-1040 | Gene | denotes | nsp5 | Gene:92521 |
| 336 | 1053-1057 | Gene | denotes | Mpro | Gene:8673700 |
| 337 | 1112-1116 | Gene | denotes | RdRp | Gene:43740578 |
| 338 | 1340-1344 | Gene | denotes | nsp1 | Gene:10045 |
| 339 | 760-768 | Gene | denotes | membrane | Gene:43740571 |
| 340 | 265-270 | Gene | denotes | Spike | Gene:43740568 |
| 341 | 173-178 | Gene | denotes | Spike | Gene:43740568 |
| 342 | 776-788 | Gene | denotes | nucleocapsid | Gene:43740575 |
| 343 | 573-585 | Gene | denotes | nucleocapsid | Gene:43740575 |
| 344 | 687-695 | Gene | denotes | envelope | Gene:43740570 |
| 345 | 1193-1197 | Gene | denotes | RdRp | Gene:43740578 |
| 346 | 492-493 | Gene | denotes | E | Gene:43740570 |
| 347 | 373-374 | Gene | denotes | M | Gene:43740571 |
| 348 | 290-291 | Gene | denotes | N | Gene:43740575 |
| 349 | 23-33 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 350 | 1234-1244 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 351 | 681-686 | Chemical | denotes | lipid | MESH:D008055 |
| 353 | 1539-1549 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32388976-32015508-144047 | 233-234 | 32015508 | denotes | 1 |
| 32388976-32015508-144048 | 848-849 | 32015508 | denotes | 1 |
| 32388976-32015508-144049 | 1515-1516 | 32015508 | denotes | 1 |